Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G0614 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1744.2 912 100.0
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1471.8 882 86.8
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 0.0e+00 1377.1 882 79.6
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1375.9 914 77.7
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 0.0e+00 1373.2 883 78.6
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1363.6 879 79.5
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 0.0e+00 1360.1 883 78.0
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 0.0e+00 1358.6 883 79.2
CSS0020507 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1345.5 918 75.4
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 0.0e+00 1345.5 883 76.9
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 0.0e+00 1343.6 884 76.9
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 0.0e+00 1340.9 882 77.8
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1340.1 883 77.0
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 0.0e+00 1338.2 918 74.9
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 0.0e+00 1335.1 885 76.8
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 0.0e+00 1332.4 883 76.3
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1332.0 883 75.9
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1330.1 882 76.8
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 0.0e+00 1327.8 883 75.8
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1325.5 883 75.7
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1323.5 917 74.5
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 0.0e+00 1323.1 883 76.1
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 0.0e+00 1318.1 883 76.7
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1318.1 883 74.5
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1317.8 883 76.2
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1317.4 884 76.7
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 0.0e+00 1316.6 886 75.6
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 0.0e+00 1316.6 883 76.3
Eucgr.G01983 Eucalyptus grandis HOM05D005483 ORTHO05D006924 0.0e+00 1316.6 884 76.5
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 0.0e+00 1316.2 884 75.0
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 0.0e+00 1315.4 920 73.3
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1315.4 883 76.0
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 0.0e+00 1314.3 883 76.1
Rhsim12G0016200 Rhododendron simsii HOM05D005483 ORTHO05D006924 0.0e+00 1314.3 883 75.4
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 0.0e+00 1312.0 920 73.3
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1312.0 882 74.8
Solyc11g033282.1 Solanum lycopersicum HOM05D005483 ORTHO05D006924 0.0e+00 1311.6 883 74.2
Sopen11g017110 Solanum pennellii HOM05D005483 ORTHO05D006924 0.0e+00 1311.2 883 74.1
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1309.3 884 76.2
Peaxi162Scf00842g00430 Petunia axillaris HOM05D005483 ORTHO05D006924 0.0e+00 1308.5 885 74.7
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1307.4 916 73.7
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1306.2 883 74.0
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 0.0e+00 1305.0 883 74.0
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1303.5 917 73.2
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1299.3 883 73.6
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 0.0e+00 1299.3 882 75.1
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1298.1 883 74.6
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1297.7 934 71.3
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1295.0 883 73.0
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 0.0e+00 1287.7 885 73.2
Lj6C839G6 Lonicera japonica HOM05D005483 ORTHO05D006924 0.0e+00 1286.2 888 74.0
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1284.2 884 72.1
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1284.2 882 74.4
HanXRQChr17g0540341 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1278.5 886 73.1
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1276.2 880 73.8
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1275.8 880 72.7
ECA246G4063 Erigeron canadensis HOM05D005483 ORTHO05D006924 0.0e+00 1275.4 883 72.7
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1273.5 882 72.0
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 0.0e+00 1271.5 890 72.9
Glyma.18G298700 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1270.4 883 72.3
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1270.0 888 72.1
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1270.0 888 72.1
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1264.6 883 72.0
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 0.0e+00 1263.8 882 72.4
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1263.4 883 71.7
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1263.1 900 71.3
Sed0017746 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1262.7 921 70.1
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 0.0e+00 1259.6 885 72.5
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 0.0e+00 1252.7 885 72.1
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 0.0e+00 1249.2 883 71.1
HanXRQChr06g0175451 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1247.3 886 71.0
Lsat_1_v5_gn_3_32540 Lactuca sativa HOM05D005483 ORTHO05D006924 0.0e+00 1242.6 884 72.3
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 0.0e+00 1235.3 883 70.1
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 0.0e+00 1231.9 885 69.9
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 0.0e+00 1231.1 849 72.0
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1230.7 904 70.4
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 0.0e+00 1227.6 886 69.5
Medtr7g006760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1224.9 884 69.6
Medtr7g406760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1224.9 884 69.6
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 0.0e+00 1221.8 881 69.5
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 0.0e+00 1215.7 888 68.6
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1213.4 880 70.6
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 0.0e+00 1209.1 846 72.3
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 0.0e+00 1201.0 888 68.6
ATR0582G070 Amborella trichopoda HOM05D005483 ORTHO05D006924 0.0e+00 1197.2 898 67.8
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 0.0e+00 1196.8 888 67.7
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 0.0e+00 1196.0 886 68.5
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1193.7 886 67.3
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 0.0e+00 1192.2 888 67.7
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 0.0e+00 1191.8 888 67.8
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 0.0e+00 1190.3 888 67.7
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 0.0e+00 1188.3 821 72.8
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1187.6 888 67.5
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1187.2 888 67.5
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1184.9 888 67.3
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1183.7 932 65.6
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1171.8 934 63.9
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1171.8 922 64.8
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1171.4 922 64.5
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1171.4 887 66.0
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1171.0 934 64.1
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 0.0e+00 1155.6 870 65.9
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 0.0e+00 1144.4 758 78.1
SEGI_17725 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 0.0e+00 1104.7 905 60.9
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1094.0 902 62.9
DCAR_026441 Daucus carota HOM05D005483 ORTHO05D006924 8.7e-280 967.2 670 73.3
unitig_22.g6373 Utricularia gibba HOM05D005483 ORTHO05D006924 2.6e-276 955.7 761 63.7
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 2.1e-262 909.4 691 67.0
Pp3c14_23090 Physcomitrium patens HOM05D005483 ORTHO05D006924 1.8e-261 906.4 909 51.3
Mapoly0029s0137 Marchantia polymorpha HOM05D005483 ORTHO05D006924 1.9e-255 886.3 879 50.5
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 5.0e-251 871.7 572 77.6
AagrBONN_evm.TU.Sc2ySwM_228.3500 Anthoceros agrestis HOM05D005483 ORTHO05D006924 3.3e-239 832.4 907 45.9
SMO116G0229 Selaginella moellendorffii HOM05D005483 ORTHO05D006924 1.2e-236 823.9 905 47.1
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 3.2e-234 815.8 543 75.9
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 1.3e-179 634.4 689 52.4
CBR_g38877 Chara braunii HOM05D005483 ORTHO05D006924 3.8e-174 616.3 908 39.1
Zm00001eb113290 Zea mays HOM05D005483 ORTHO05D006924 1.5e-151 541.2 450 60.7
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 1.3e-150 538.1 369 71.3
Nitab4.5_0002569g0090 Nicotiana tabacum HOM05D005483 ORTHO05D006924 1.0e-147 528.5 360 73.1
Os11g0528200 Oryza sativa ssp. japonica HOM05D005483 ORTHO05D006924 4.7e-124 449.9 347 62.8
Actinidia22109 Actinidia chinensis HOM05D005483 ORTHO05D006924 1.1e-85 322.4 305 58.7
SEGI_02355 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 1.1e-85 322.4 358 50.0
Hma1.2p1_1494F.1_g286880 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 4.7e-68 263.8 168 81.0
Cre01.g018050 Chlamydomonas reinhardtii HOM05D005483 ORTHO05D006924 2.3e-67 261.5 875 27.8
Oeu011729.2 Olea europaea HOM05D005483 ORTHO05D000122 1.5e-61 242.3 397 41.1
MCO16G196 Micromonas commoda HOM05D005483 ORTHO05D006924 3.6e-60 237.7 893 26.1
DCAR_026440 Daucus carota HOM05D005483 ORTHO05D006924 2.6e-58 231.5 168 70.8
Actinidia22108 Actinidia chinensis HOM05D005483 ORTHO05D006924 9.0e-51 206.5 183 67.8
SGA_v2.0_scaffold98G29280 Striga asiatica HOM05D005483 ORTHO05D007482 2.7e-47 194.9 136 72.8
RcHm_v2.0_Chr6g0278911 Rosa chinensis HOM05D005483 ORTHO05D006924 5.3e-35 154.1 106 79.2
Pp3c1_41760 Physcomitrium patens HOM05D005483 ORTHO05D006924 1.5e-34 152.5 637 23.4
DCAR_029048 Daucus carota HOM05D005483 ORTHO05D006924 1.1e-27 129.8 110 71.8
RcHm_v2.0_Chr2g0133761 Rosa chinensis HOM05D005483 ORTHO05D006924 1.1e-27 129.8 87 79.3
RcHm_v2.0_Chr2g0126951 Rosa chinensis HOM05D005483 ORTHO05D006924 1.2e-26 126.3 87 77.0
RcHm_v2.0_Chr5g0056851 Rosa chinensis HOM05D005483 ORTHO05D006924 1.6e-23 115.9 69 71.0
RcHm_v2.0_Chr7g0226991 Rosa chinensis HOM05D005483 ORTHO05D006924 6.1e-23 114.0 68 70.6
unitig_22.g6372 Utricularia gibba HOM05D005483 ORTHO05D006924 4.7e-15 87.8 65 66.2
RcHm_v2.0_Chr0c29g0501111 Rosa chinensis HOM05D005483 ORTHO05D000581 2.7e-07 62.0 46 71.7


User provided reference genes

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