Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G0610 Trochodendron aralioides HOM05D005365 ORTHO05D006910 0.0e+00 1953.3 1036 100.0
Nn4g24353 Nelumbo nucifera HOM05D005365 ORTHO05D006910 0.0e+00 1496.9 1008 76.7
Dinv19044 Davidia involucrata HOM05D005365 ORTHO05D006910 0.0e+00 1432.2 1018 73.7
Cfa007794 Carpinus fangiana HOM05D005365 ORTHO05D006910 0.0e+00 1380.9 1006 71.7
Actinidia06487 Actinidia chinensis HOM05D005365 ORTHO05D006910 0.0e+00 1378.6 1012 70.3
CSS0031268 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 0.0e+00 1365.1 1012 70.6
Aqoxy2G03929 Aquilegia oxysepala HOM05D005365 ORTHO05D006910 0.0e+00 1360.1 1017 70.5
Lj2C520T1 Lonicera japonica HOM05D005365 ORTHO05D006910 0.0e+00 1357.8 1013 70.0
GSVIVG01014028001 Vitis vinifera HOM05D005365 ORTHO05D006910 0.0e+00 1355.9 1016 70.7
Haze_14277 Corylus avellana HOM05D005365 ORTHO05D006910 0.0e+00 1354.7 1016 70.2
QL02p059099 Quercus lobata HOM05D005365 ORTHO05D006910 0.0e+00 1332.0 1121 65.2
PSO017G3744 Papaver somniferum HOM05D005365 ORTHO05D006910 0.0e+00 1323.1 1019 69.3
PSO478G2448 Papaver somniferum HOM05D005365 ORTHO05D006910 0.0e+00 1322.8 1020 69.2
Prupe.3G017700 Prunus persica HOM05D005365 ORTHO05D006910 0.0e+00 1311.6 1015 68.3
vmacro07709 Vaccinium macrocarpon HOM05D005365 ORTHO05D006910 0.0e+00 1309.3 1017 68.9
CiPaw.03G073200 Carya illinoinensis HOM05D005365 ORTHO05D006910 0.0e+00 1305.0 1014 69.0
Ciclev10010965m.g Citrus clementina HOM05D005365 ORTHO05D006910 0.0e+00 1302.7 1009 68.6
TWI77G0914 Tripterygium wilfordii HOM05D005365 ORTHO05D006910 0.0e+00 1295.4 986 69.2
Hma1.2p1_1583F.1_g291990 Hydrangea macrophylla HOM05D005365 ORTHO05D006910 0.0e+00 1292.7 956 70.8
MD09G1270700 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1290.4 1011 67.2
Atru.chr1.1986 Acer truncatum HOM05D005365 ORTHO05D006910 0.0e+00 1285.0 1013 67.5
CSS0046739 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 0.0e+00 1284.6 1012 67.5
MD17G1268900 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1284.6 1013 67.6
Potri.004G085500 Populus trichocarpa HOM05D005365 ORTHO05D006910 0.0e+00 1276.5 1033 66.9
Duzib133G0311 Durio zibethinus HOM05D005365 ORTHO05D006910 0.0e+00 1275.4 1022 66.6
Manes.03G027200 Manihot esculenta HOM05D005365 ORTHO05D006910 0.0e+00 1271.9 1027 66.0
Cpa.g.sc116.71 Carica papaya HOM05D005365 ORTHO05D006910 0.0e+00 1261.9 1014 65.1
Thecc.04G055200 Theobroma cacao HOM05D005365 ORTHO05D006910 0.0e+00 1255.0 986 67.0
FAN26G1336 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1248.4 1032 65.5
Gorai.007G187500 Gossypium raimondii HOM05D005365 ORTHO05D006910 0.0e+00 1246.1 1022 65.3
Sopen11g006160 Solanum pennellii HOM05D005365 ORTHO05D006910 0.0e+00 1243.8 1007 64.3
Solyc11g011370.2 Solanum lycopersicum HOM05D005365 ORTHO05D006910 0.0e+00 1242.6 1009 64.3
Nitab4.5_0012785g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 0.0e+00 1238.8 1048 63.4
RcHm_v2.0_Chr3g0491161 Rosa chinensis HOM05D005365 ORTHO05D006910 0.0e+00 1228.8 1009 65.7
CAN.G222.54 Capsicum annuum HOM05D005365 ORTHO05D006910 0.0e+00 1228.4 1002 64.4
Cc07_g13300 Coffea canephora HOM05D005365 ORTHO05D006910 0.0e+00 1228.4 1022 63.3
Lj6g0003323 Lotus japonicus HOM05D005365 ORTHO05D006910 0.0e+00 1226.1 978 63.9
arahy.Tifrunner.gnm1.ann1.WJY350 Arachis hypogaea HOM05D005365 ORTHO05D006910 0.0e+00 1224.9 1020 63.6
Ca_17092_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 0.0e+00 1224.9 1015 63.7
FAN19G1822 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1223.8 1007 65.8
Glyma.11G215600 Glycine max HOM05D005365 ORTHO05D006910 0.0e+00 1219.5 1006 63.2
arahy.Tifrunner.gnm1.ann1.MH7SY7 Arachis hypogaea HOM05D005365 ORTHO05D006910 0.0e+00 1218.8 1020 63.2
Glyma.18G041000 Glycine max HOM05D005365 ORTHO05D006910 0.0e+00 1205.7 1006 62.6
Peaxi162Scf00562g00038 Petunia axillaris HOM05D005365 ORTHO05D006910 0.0e+00 1204.5 1016 63.4
VMungo1383G2900 Vigna mungo HOM05D005365 ORTHO05D006910 0.0e+00 1203.3 1014 62.5
Medtr3g065300 Medicago truncatula HOM05D005365 ORTHO05D006910 0.0e+00 1202.6 1013 62.2
ECA238G2923 Erigeron canadensis HOM05D005365 ORTHO05D006910 0.0e+00 1201.8 1004 63.3
Lalb_Chr15g0084951 Lupinus albus HOM05D005365 ORTHO05D006910 0.0e+00 1201.4 1013 62.3
Eucgr.F02871 Eucalyptus grandis HOM05D005365 ORTHO05D006910 0.0e+00 1200.3 1019 62.9
Phvul.001G229600 Phaseolus vulgaris HOM05D005365 ORTHO05D006910 0.0e+00 1197.2 1004 62.7
Sabra04G0056600 Salix brachista HOM05D005365 ORTHO05D006910 0.0e+00 1194.9 1025 63.8
Lsat_1_v5_gn_2_68700 Lactuca sativa HOM05D005365 ORTHO05D006910 0.0e+00 1192.6 1011 61.9
CANSAT80G2352 Cannabis sativa HOM05D005365 ORTHO05D006910 0.0e+00 1189.9 1021 62.3
AUR62018225 Chenopodium quinoa HOM05D005365 ORTHO05D006910 0.0e+00 1180.6 1011 62.2
Psat5g120520 Pisum sativum HOM05D005365 ORTHO05D006910 0.0e+00 1178.3 1016 60.6
Gohir.D11G174900 Gossypium hirsutum HOM05D005365 ORTHO05D006910 0.0e+00 1175.6 934 66.1
MSTRG.15661 Avicennia marina HOM05D005365 ORTHO05D006910 0.0e+00 1174.1 1011 61.9
MBI19_g22067_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 0.0e+00 1173.7 1144 58.2
ATR0753G168 Amborella trichopoda HOM05D005365 ORTHO05D006910 0.0e+00 1172.5 1007 61.9
ClCG03G008820 Citrullus lanatus HOM05D005365 ORTHO05D006910 0.0e+00 1167.1 1006 61.5
THA.LOC104805627 Tarenaya hassleriana HOM05D005365 ORTHO05D006910 0.0e+00 1166.0 1030 61.3
AUR62037789 Chenopodium quinoa HOM05D005365 ORTHO05D006910 0.0e+00 1165.6 1012 61.8
CsaV3_5G023940 Cucumis sativus L. HOM05D005365 ORTHO05D006910 0.0e+00 1162.1 1009 61.3
EL10Ac2g03189 Beta vulgaris HOM05D005365 ORTHO05D006910 0.0e+00 1161.7 1011 61.9
MELO3C022831.2 Cucumis melo HOM05D005365 ORTHO05D006910 0.0e+00 1154.4 1013 60.8
PGR004G1341 Punica granatum HOM05D005365 ORTHO05D006910 0.0e+00 1145.6 1010 61.7
CARHR215230 Cardamine hirsuta HOM05D005365 ORTHO05D006910 0.0e+00 1144.8 1051 58.8
Ca_17099_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 0.0e+00 1144.8 1015 61.1
SGA_v2.0_scaffold45G17160 Striga asiatica HOM05D005365 ORTHO05D006910 0.0e+00 1144.0 1056 58.0
Aa31LG9G17470 Aethionema arabicum HOM05D005365 ORTHO05D006910 0.0e+00 1138.6 1023 60.4
Sp7g04480 Schrenkiella parvula HOM05D005365 ORTHO05D006910 0.0e+00 1134.4 1058 58.7
Migut.K00918 Erythranthe guttata HOM05D005365 ORTHO05D006910 0.0e+00 1131.3 1014 59.7
AL7G46400 Arabidopsis lyrata HOM05D005365 ORTHO05D006910 0.0e+00 1129.0 1012 59.3
AT5G37630 Arabidopsis thaliana HOM05D005365 ORTHO05D006910 0.0e+00 1127.5 1012 59.3
DCAR_028454 Daucus carota HOM05D005365 ORTHO05D006910 0.0e+00 1122.1 1011 59.8
Thhalv10027629m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 0.0e+00 1121.7 1025 59.3
Hund13093 Selenicereus undatus HOM05D005365 ORTHO05D006910 0.0e+00 1119.0 1024 59.7
Carub.0007s3279 Capsella rubella HOM05D005365 ORTHO05D006910 0.0e+00 1117.8 1060 57.9
A04p10780 Brassica napus HOM05D005365 ORTHO05D006910 0.0e+00 1117.1 1015 59.3
BraA04t16742Z Brassica rapa HOM05D005365 ORTHO05D006910 0.0e+00 1117.1 1015 59.3
BcaC02g09592 Brassica carinata HOM05D005365 ORTHO05D006910 0.0e+00 1109.4 1026 58.3
BolC4t26020H Brassica oleracea HOM05D005365 ORTHO05D006910 0.0e+00 1107.4 1026 58.2
C04p44500 Brassica napus HOM05D005365 ORTHO05D006910 0.0e+00 1099.7 1051 56.9
Zm00001eb379890 Zea mays HOM05D005365 ORTHO05D006910 0.0e+00 1098.2 1018 58.0
BcaB06g27110 Brassica carinata HOM05D005365 ORTHO05D006910 0.0e+00 1094.0 1019 58.2
CDE05G1264 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 0.0e+00 1075.5 839 66.2
Nitab4.5_0000201g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 4.9e-295 1018.1 929 59.0
FvH4_1g30230 Fragaria vesca HOM05D005365 ORTHO05D006910 1.6e-282 976.5 750 66.8
Rhsim10G0178300 Rhododendron simsii HOM05D005365 ORTHO05D006910 8.9e-281 970.7 1020 54.4
FAN23G0266 Fragaria x ananassa HOM05D005365 ORTHO05D006910 4.4e-280 968.4 750 66.4
Sc11g0004580 Simmondsia chinensis HOM05D005365 ORTHO05D006910 1.8e-273 946.4 747 65.5
Gohir.A11G168700 Gossypium hirsutum HOM05D005365 ORTHO05D006910 6.8e-273 944.5 741 65.7
Ah.10g032430 Amaranthus hybridus HOM05D005365 ORTHO05D006910 1.5e-272 943.3 778 63.1
Sed0006074 Sechium edule HOM05D005365 ORTHO05D006910 4.6e-269 931.8 748 63.8
Actinidia17204 Actinidia chinensis HOM05D005365 ORTHO05D006910 6.9e-257 891.3 643 70.9
COL.COLO4_13431 Corchorus olitorius HOM05D005365 ORTHO05D006910 7.4e-251 871.3 1017 51.0
Dinv28185 Davidia involucrata HOM05D005365 ORTHO05D006910 1.7e-247 860.1 550 77.8
unitig_0.g2645 Utricularia gibba HOM05D005365 ORTHO05D006910 3.4e-224 782.7 988 47.1
PGSC0003DMG400013306 Solanum tuberosum HOM05D005365 ORTHO05D006910 4.1e-217 759.2 647 62.3
TPR.G24911 Trifolium pratense HOM05D005365 ORTHO05D006910 2.4e-209 733.4 563 64.7
Pp3c22_14670 Physcomitrium patens HOM05D005365 ORTHO05D006910 1.7e-202 710.7 1016 42.2
HPP92_006138 Vanilla planifolia HOM05D005365 ORTHO05D006910 1.2e-200 704.5 606 61.1
SEGI_16018 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 2.1e-197 693.7 686 55.1
Mapoly0032s0119 Marchantia polymorpha HOM05D005365 ORTHO05D006910 5.0e-183 646.0 888 43.1
GSVIVG01038363001 Vitis vinifera HOM05D005365 ORTHO05D006910 6.6e-175 619.0 428 72.7
SMO367G0263 Selaginella moellendorffii HOM05D005365 ORTHO05D006910 1.9e-174 617.5 932 39.9
AagrBONN_evm.TU.Sc2ySwM_228.4009 Anthoceros agrestis HOM05D005365 ORTHO05D006910 3.7e-162 576.6 984 38.9
Thhalv10027679m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 6.2e-157 559.3 646 52.0
SEGI_18021 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 2.1e-104 384.8 318 58.8
Oeu012492.1 Olea europaea HOM05D005365 ORTHO05D006910 3.2e-97 360.9 776 38.3
GSVIVG01038362001 Vitis vinifera HOM05D005365 ORTHO05D006910 3.6e-96 357.5 248 73.8
Os06g0256000 Oryza sativa ssp. japonica HOM05D005365 ORTHO05D006910 3.1e-92 344.4 393 51.4
SGA_v2.0_scaffold45G17195 Striga asiatica HOM05D005365 ORTHO05D006910 8.3e-85 319.7 356 50.3
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 9.4e-81 306.2 265 59.2
Oeu012494.1 Olea europaea HOM05D005365 ORTHO05D006910 1.6e-80 305.4 238 64.7
CDE05G3412 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 2.0e-75 288.5 204 71.1
CBR_g39392 Chara braunii HOM05D000019 ORTHO05D000048 3.3e-73 281.2 420 38.1
MCO13G329 Micromonas commoda HOM05D005365 ORTHO05D006910 4.0e-71 274.2 1042 25.7
MBI19_g43231_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 5.7e-70 270.4 236 62.3
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 4.3e-65 254.2 195 63.1
CAN.G691.4 Capsicum annuum HOM05D005365 ORTHO05D006910 9.5e-65 253.1 301 50.8
TPR.G674 Trifolium pratense HOM05D005365 ORTHO05D006910 2.6e-62 245.0 254 57.9
PRCOL_00005851 Prasinoderma coloniale HOM05D005365 ORTHO05D006910 1.3e-61 242.7 822 28.5
HPP92_006139 Vanilla planifolia HOM05D005365 ORTHO05D006910 5.8e-46 190.7 255 50.6
GSVIVG01030692001 Vitis vinifera HOM05D005365 ORTHO05D006910 6.0e-43 180.6 133 70.7
SGA_v2.0_scaffold45G17196 Striga asiatica HOM05D005365 ORTHO05D006910 1.3e-32 146.4 105 71.4
Nn1g00453 Nelumbo nucifera HOM05D005365 ORTHO05D006910 5.3e-23 114.4 64 82.8
Psat1g154520 Pisum sativum HOM05D005365 ORTHO05D006910 3.2e-20 105.1 86 61.6
Gorai.005G096400 Gossypium raimondii HOM05D005365 ORTHO05D015145 1.1e-17 96.7 68 64.7
Psat7g195800 Pisum sativum HOM05D005365 ORTHO05D006910 1.3e-16 93.2 77 62.3
Gohir.D04G112220 Gossypium hirsutum HOM05D005365 ORTHO05D006910 2.1e-16 92.4 67 62.7
GSVIVG01030691001 Vitis vinifera HOM05D005365 ORTHO05D006910 4.8e-16 91.3 70 65.7
SEGI_04861 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 1.7e-13 82.8 73 57.5
Sabra17G0109200 Salix brachista HOM05D005365 ORTHO05D349400 2.9e-13 82.0 341 28.7
TPR.G7041 Trifolium pratense HOM05D005365 ORTHO05D006910 1.8e-10 72.8 51 62.7
SEGI_36380 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 2.5e-09 68.9 50 64.0
Gohir.D09G013833 Gossypium hirsutum HOM05D005365 ORTHO05D015145 1.6e-08 66.2 45 66.7
SEGI_22187 Sequoiadendron giganteum HOM05D005365 ORTHO05D000227 2.8e-08 65.5 44 63.6
SEGI_38146 Sequoiadendron giganteum HOM05D002115 ORTHO05D002263 1.0e-05 57.0 83 41.0


User provided reference genes

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