Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G0529 Trochodendron aralioides HOM05D005813 ORTHO05D007310 1.0e-246 856.3 438 100.0
Nn1g01240 Nelumbo nucifera HOM05D005813 ORTHO05D007310 1.1e-200 703.4 436 81.7
Nn4g26391 Nelumbo nucifera HOM05D005813 ORTHO05D007310 4.3e-200 701.4 436 81.0
MBI04_g35272_MAGBIO Magnolia biondii HOM05D005813 ORTHO05D007310 2.8e-199 698.7 436 80.0
Cfa001724 Carpinus fangiana HOM05D005813 ORTHO05D007310 1.5e-192 676.4 436 79.1
CSS0030666 Camellia sinensis var. sinensis HOM05D005813 ORTHO05D007310 2.1e-191 672.5 434 78.1
CSS0042195 Camellia sinensis var. sinensis HOM05D005813 ORTHO05D007310 2.1e-191 672.5 434 78.1
CiPaw.02G167800 Carya illinoinensis HOM05D005813 ORTHO05D007310 8.1e-191 670.6 434 77.6
Duzib138G0196 Durio zibethinus HOM05D005813 ORTHO05D007310 1.5e-189 666.4 440 75.5
PGR031G3848 Punica granatum HOM05D005813 ORTHO05D007310 1.5e-189 666.4 436 77.1
Duzib133G0639 Durio zibethinus HOM05D005813 ORTHO05D007310 1.7e-188 662.9 440 75.0
QL08p052527 Quercus lobata HOM05D005813 ORTHO05D007310 6.4e-188 661.0 435 77.7
CiPaw.01G262200 Carya illinoinensis HOM05D005813 ORTHO05D007310 1.1e-187 660.2 434 77.4
TWI59G1428 Tripterygium wilfordii HOM05D005813 ORTHO05D007310 2.1e-186 656.0 437 74.6
Potri.014G069400 Populus trichocarpa HOM05D005813 ORTHO05D007310 2.7e-186 655.6 439 73.8
Sabra02G0115400 Salix brachista HOM05D005813 ORTHO05D007310 3.5e-186 655.2 460 72.6
Manes.05G045300 Manihot esculenta HOM05D005813 ORTHO05D007310 4.6e-186 654.8 440 73.9
Sabra02G0117100 Salix brachista HOM05D005813 ORTHO05D007310 4.6e-186 654.8 454 73.1
Lj7A528T62 Lonicera japonica HOM05D005813 ORTHO05D007310 1.0e-185 653.7 456 73.5
MELO3C006191.2 Cucumis melo HOM05D005813 ORTHO05D007310 3.9e-185 651.7 436 74.5
CsaV3_3G009700 Cucumis sativus L. HOM05D005813 ORTHO05D007310 6.6e-185 651.0 436 74.5
Lj1g0017617 Lotus japonicus HOM05D005813 ORTHO05D007310 1.5e-184 649.8 432 74.5
ClCG05G002290 Citrullus lanatus HOM05D005813 ORTHO05D007310 1.9e-184 649.4 436 74.8
Potri.002G148100 Populus trichocarpa HOM05D005813 ORTHO05D007310 1.9e-184 649.4 438 74.0
Prupe.2G145000 Prunus persica HOM05D005813 ORTHO05D007310 4.7e-183 644.8 434 73.7
Cpa.g.sc18.111 Carica papaya HOM05D005813 ORTHO05D007310 6.2e-183 644.4 440 73.6
Eucgr.D02453 Eucalyptus grandis HOM05D005813 ORTHO05D007310 1.1e-182 643.7 437 73.9
PSO478G4467 Papaver somniferum HOM05D005813 ORTHO05D007310 1.1e-182 643.7 432 74.5
PSO782G1692 Papaver somniferum HOM05D005813 ORTHO05D007310 2.4e-182 642.5 432 73.6
Cc02_g23900 Coffea canephora HOM05D005813 ORTHO05D007310 4.0e-182 641.7 443 72.2
Dinv43710 Davidia involucrata HOM05D005813 ORTHO05D007310 8.9e-182 640.6 397 82.9
Thecc.01G376600 Theobroma cacao HOM05D005813 ORTHO05D007310 5.8e-181 637.9 440 72.7
Glyma.09G269300 Glycine max HOM05D005813 ORTHO05D007310 7.6e-181 637.5 440 73.2
Sc02g0002610 Simmondsia chinensis HOM05D005813 ORTHO05D007310 9.9e-181 637.1 440 71.4
Glyma.18G220700 Glycine max HOM05D005813 ORTHO05D007310 2.2e-180 636.0 438 72.8
CARHR248130 Cardamine hirsuta HOM05D005813 ORTHO05D007310 4.9e-180 634.8 436 73.2
Gohir.A08G031100 Gossypium hirsutum HOM05D005813 ORTHO05D007310 8.4e-180 634.0 434 71.9
MSTRG.17192 Avicennia marina HOM05D005813 ORTHO05D007310 1.4e-179 633.3 440 72.7
Ca_11657_v3 Cicer arietinum L. HOM05D005813 ORTHO05D007310 1.4e-179 633.3 439 72.7
arahy.Tifrunner.gnm1.ann1.4B5N4V Arachis hypogaea HOM05D005813 ORTHO05D007310 2.4e-179 632.5 442 72.4
Migut.B01633 Erythranthe guttata HOM05D005813 ORTHO05D007310 3.2e-179 632.1 433 72.3
Hund27345 Selenicereus undatus HOM05D005813 ORTHO05D007310 4.2e-179 631.7 441 71.0
CANSAT56G4177 Cannabis sativa HOM05D005813 ORTHO05D007310 5.4e-179 631.3 437 71.9
Nitab4.5_0004917g0040 Nicotiana tabacum HOM05D005813 ORTHO05D007310 7.8e-178 627.5 441 71.7
Ciclev10020183m.g Citrus clementina HOM05D005813 ORTHO05D007310 1.0e-177 627.1 441 72.3
MD02G1204700 Malus domestica HOM05D005813 ORTHO05D007310 1.0e-177 627.1 441 72.1
GSVIVG01027606001 Vitis vinifera HOM05D005813 ORTHO05D007310 2.3e-177 625.9 412 77.2
Sp6g00150 Schrenkiella parvula HOM05D005813 ORTHO05D007310 3.0e-177 625.5 436 72.2
THA.LOC104817009 Tarenaya hassleriana HOM05D005813 ORTHO05D007310 3.9e-177 625.2 434 72.1
Lalb_Chr03g0039571 Lupinus albus HOM05D005813 ORTHO05D007310 8.7e-177 624.0 440 71.8
Phvul.008G076400 Phaseolus vulgaris HOM05D005813 ORTHO05D007310 8.7e-177 624.0 438 71.9
TPR.G29407 Trifolium pratense HOM05D005813 ORTHO05D007310 8.7e-177 624.0 434 73.0
VMungo1383G1345 Vigna mungo HOM05D005813 ORTHO05D007310 8.7e-177 624.0 438 71.5
ATR0810G089 Amborella trichopoda HOM05D005813 ORTHO05D007310 1.1e-176 623.6 431 72.6
Gohir.D08G042200 Gossypium hirsutum HOM05D005813 ORTHO05D007310 1.9e-176 622.9 434 70.7
Solyc01g091310.3 Solanum lycopersicum HOM05D005813 ORTHO05D007310 1.9e-176 622.9 443 70.0
SGA_v2.0_scaffold153G37009 Striga asiatica HOM05D005813 ORTHO05D007310 1.2e-175 620.2 441 69.8
arahy.Tifrunner.gnm1.ann1.DKE7V3 Arachis hypogaea HOM05D005813 ORTHO05D007310 2.8e-175 619.0 434 72.1
Sed0028100 Sechium edule HOM05D005813 ORTHO05D007310 2.8e-175 619.0 432 72.0
Aqoxy7G00631 Aquilegia oxysepala HOM05D005813 ORTHO05D007310 4.7e-175 618.2 432 72.2
Carub.0006s3714 Capsella rubella HOM05D005813 ORTHO05D007310 6.2e-175 617.8 432 72.0
unitig_749.g14372 Utricularia gibba HOM05D005813 ORTHO05D007310 1.4e-174 616.7 443 69.5
BcaC04g24202 Brassica carinata HOM05D005813 ORTHO05D007310 2.4e-174 615.9 435 70.8
BolC9t52946H Brassica oleracea HOM05D005813 ORTHO05D007310 2.4e-174 615.9 435 70.8
Haze_16813 Corylus avellana HOM05D005813 ORTHO05D007310 3.1e-174 615.5 404 78.2
Medtr7g074890 Medicago truncatula HOM05D005813 ORTHO05D007310 4.0e-174 615.1 434 72.4
Oeu055488.1 Olea europaea HOM05D005813 ORTHO05D007310 4.0e-174 615.1 468 67.5
C09p00110 Brassica napus HOM05D005813 ORTHO05D007310 5.3e-174 614.8 436 70.4
BraA09t35685Z Brassica rapa HOM05D005813 ORTHO05D007310 5.3e-174 614.8 436 70.4
Sopen01g037050 Solanum pennellii HOM05D005813 ORTHO05D007310 2.0e-173 612.8 443 69.1
AL6G53420 Arabidopsis lyrata HOM05D005813 ORTHO05D007310 2.6e-173 612.5 436 71.1
BcaB01g02210 Brassica carinata HOM05D005813 ORTHO05D007310 3.4e-173 612.1 438 69.2
Thhalv10028676m.g Eutrema salsugineum HOM05D005813 ORTHO05D007310 4.4e-173 611.7 435 70.6
AT4G00090 Arabidopsis thaliana HOM05D005813 ORTHO05D007310 7.6e-173 610.9 436 70.6
Gohir.A08G134600 Gossypium hirsutum HOM05D005813 ORTHO05D007310 2.2e-172 609.4 439 70.2
Gohir.D08G155500 Gossypium hirsutum HOM05D005813 ORTHO05D007310 1.1e-171 607.1 439 70.2
Gorai.004G161700 Gossypium raimondii HOM05D005813 ORTHO05D007310 1.1e-171 607.1 439 70.2
Atru.chr5.306 Acer truncatum HOM05D005813 ORTHO05D007310 4.2e-171 605.1 440 72.0
FAN10G1195 Fragaria x ananassa HOM05D005813 ORTHO05D007310 5.4e-171 604.7 439 69.5
FAN01G0479 Fragaria x ananassa HOM05D005813 ORTHO05D007310 1.2e-170 603.6 439 69.5
Rhsim01G0147300 Rhododendron simsii HOM05D005813 ORTHO05D007310 1.2e-170 603.6 465 67.1
SalBow5G4545 Salvia bowleyana HOM05D005813 ORTHO05D007310 1.6e-170 603.2 443 70.2
Gorai.004G040800 Gossypium raimondii HOM05D005813 ORTHO05D007310 2.1e-170 602.8 480 63.8
FvH4_7g11840 Fragaria vesca HOM05D005813 ORTHO05D007310 6.0e-170 601.3 439 69.2
FAN06G0614 Fragaria x ananassa HOM05D005813 ORTHO05D007310 6.0e-170 601.3 439 69.2
Sed0000354 Sechium edule HOM05D005813 ORTHO05D007310 3.9e-169 598.6 421 71.3
FAN10G2798 Fragaria x ananassa HOM05D005813 ORTHO05D007310 5.1e-169 598.2 439 69.0
HanXRQChr04g0122421 Helianthus annuus HOM05D005813 ORTHO05D007310 2.5e-168 595.9 438 70.1
CDE09G1050 Ceratophyllum demersum HOM05D005813 ORTHO05D007310 9.6e-168 594.0 436 68.3
EL10Ac1g00888 Beta vulgaris HOM05D005813 ORTHO05D007310 2.1e-167 592.8 441 66.2
AUR62004213 Chenopodium quinoa HOM05D005813 ORTHO05D007310 2.1e-167 592.8 439 65.6
Lsat_1_v5_gn_7_7160 Lactuca sativa HOM05D005813 ORTHO05D007310 3.6e-167 592.0 436 69.5
Ah.05g174210 Amaranthus hybridus HOM05D005813 ORTHO05D007310 4.8e-167 591.7 438 66.2
CDE11G1084 Ceratophyllum demersum HOM05D005813 ORTHO05D007310 4.8e-167 591.7 436 67.9
FAN06G1564 Fragaria x ananassa HOM05D005813 ORTHO05D007310 1.1e-166 590.5 451 67.2
Aa31LG5G9310 Aethionema arabicum HOM05D005813 ORTHO05D007310 2.4e-166 589.3 466 65.9
RcHm_v2.0_Chr1g0350521 Rosa chinensis HOM05D005813 ORTHO05D007310 2.4e-166 589.3 439 69.5
MD07G1121300 Malus domestica HOM05D005813 ORTHO05D007310 3.1e-166 589.0 441 68.9
vmacro21010 Vaccinium macrocarpon HOM05D005813 ORTHO05D007310 3.1e-166 589.0 453 67.8
Actinidia12685 Actinidia chinensis HOM05D005813 ORTHO05D007310 6.0e-162 574.7 438 68.3
unitig_76.g29089 Utricularia gibba HOM05D005813 ORTHO05D007310 9.6e-160 567.4 400 70.8
Nitab4.5_0000457g0240 Nicotiana tabacum HOM05D005813 ORTHO05D007310 4.2e-155 552.0 384 72.1
FAN03G1318 Fragaria x ananassa HOM05D005813 ORTHO05D007310 6.0e-154 548.1 396 69.4
Peaxi162Scf00013g03441 Petunia axillaris HOM05D005813 ORTHO05D007310 1.3e-153 547.0 399 69.7
SEGI_07293 Sequoiadendron giganteum HOM05D005813 ORTHO05D007310 1.1e-150 537.3 424 64.6
Psat3g115920 Pisum sativum HOM05D005813 ORTHO05D007310 1.5e-149 533.5 434 65.9
HPP92_003519 Vanilla planifolia HOM05D005813 ORTHO05D007310 2.6e-149 532.7 428 64.3
Zm00001eb065090 Zea mays HOM05D005813 ORTHO05D007310 2.2e-148 529.6 433 63.3
AUR62013635 Chenopodium quinoa HOM05D005813 ORTHO05D007310 1.0e-145 520.8 450 58.2
COL.COLO4_12543 Corchorus olitorius HOM05D005813 ORTHO05D007310 4.8e-143 511.9 440 62.3
Mapoly0037s0016 Marchantia polymorpha HOM05D005813 ORTHO05D007310 1.0e-132 477.6 434 56.2
Pp3c19_7620 Physcomitrium patens HOM05D005813 ORTHO05D007310 1.3e-127 460.7 434 54.6
AagrBONN_evm.TU.Sc2ySwM_117.33 Anthoceros agrestis HOM05D005813 ORTHO05D007310 2.2e-124 449.9 459 52.5
DCAR_015903 Daucus carota HOM05D005813 ORTHO05D007310 1.8e-121 440.3 330 68.2
PGSC0003DMG400012776 Solanum tuberosum HOM05D005813 ORTHO05D007310 3.0e-121 439.5 275 75.6
SHI01708 Sapria himalayana HOM05D005813 ORTHO05D007310 5.2e-121 438.7 435 54.0
A09p00750 Brassica napus HOM05D005813 ORTHO05D007310 4.4e-120 435.6 279 74.6
PSO782G5041 Papaver somniferum HOM05D005813 ORTHO05D007310 4.2e-115 419.1 327 64.8
SMO367G0685 Selaginella moellendorffii HOM05D005813 ORTHO05D007310 2.3e-113 413.3 359 55.2
PSO170G3521 Papaver somniferum HOM05D005813 ORTHO05D007310 1.5e-107 394.0 348 60.6
CBR_g23070 Chara braunii HOM05D005813 ORTHO05D007310 3.2e-107 392.9 404 51.7
Psat3g202640 Pisum sativum HOM05D005813 ORTHO05D007310 7.2e-107 391.7 296 68.9
CBR_g21297 Chara braunii HOM05D005813 ORTHO05D007310 2.3e-105 386.7 387 52.2
PSO675G1684 Papaver somniferum HOM05D005813 ORTHO05D007310 4.3e-83 312.8 241 62.2
Actinidia33466 Actinidia chinensis HOM05D005813 ORTHO05D007310 9.2e-78 295.0 182 77.5
PSO478G0826 Papaver somniferum HOM05D005813 ORTHO05D007310 4.0e-57 226.5 156 71.2
Cre02.g102450 Chlamydomonas reinhardtii HOM05D005813 ORTHO05D007310 5.1e-52 209.5 415 34.9
MCO05G082 Micromonas commoda HOM05D005813 ORTHO05D007310 3.4e-40 170.2 402 30.1
PSO478G4170 Papaver somniferum HOM05D005813 ORTHO05D007310 7.7e-24 115.9 133 49.6
Hund06583 Selenicereus undatus HOM05D004669 ORTHO05D005767 2.6e-08 64.3 227 24.7
CSS0009653 Camellia sinensis var. sinensis HOM05D004669 ORTHO05D005767 1.0e-07 62.4 218 23.9
Cfa002013 Carpinus fangiana HOM05D004669 ORTHO05D005767 1.7e-07 61.6 227 23.8
EL10Ac4g08444 Beta vulgaris HOM05D004768 ORTHO05D005812 2.2e-07 61.2 202 27.2
CSS0030600 Camellia sinensis var. sinensis HOM05D005813 ORTHO05D007310 8.5e-07 59.3 70 48.6
CAN.G464.7 Capsicum annuum HOM05D001455 ORTHO05D001587 8.5e-07 59.3 69 44.9
Cpa.g.sc10.221 Carica papaya HOM05D004669 ORTHO05D005767 8.5e-07 59.3 227 23.3
MELO3C031411.2 Cucumis melo HOM05D000544 ORTHO05D169468 1.9e-06 58.2 59 54.2
Sed0027531 Sechium edule HOM05D004669 ORTHO05D005767 1.9e-06 58.2 178 25.8
MELO3C029166.2 Cucumis melo HOM05D005813 ORTHO05D009576 3.2e-06 57.4 56 48.2
Zm00001eb386980 Zea mays HOM05D000002 ORTHO05D006339 5.5e-06 56.6 157 26.1
Os06g0644600 Oryza sativa ssp. japonica HOM05D000002 ORTHO05D006339 7.2e-06 56.2 157 27.4


User provided reference genes

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