Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G0516 Trochodendron aralioides HOM05D007096 ORTHO05D008288 2.0e-43 178.7 93 100.0
TAR622G0633 Trochodendron aralioides HOM05D000618 ORTHO05D000454 6.8e-23 110.5 92 65.2
Nn4g23168 Nelumbo nucifera HOM05D007096 ORTHO05D008288 8.9e-23 110.2 90 62.2
Nn3g17242 Nelumbo nucifera HOM05D007096 ORTHO05D008288 4.9e-21 104.4 87 60.9
TAR629G1384 Trochodendron aralioides HOM05D000618 ORTHO05D000454 1.4e-20 102.8 88 65.9
TAR371G0768 Trochodendron aralioides HOM05D007096 ORTHO05D008288 2.7e-19 98.6 88 60.2
CSS0036898 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 1.1e-17 93.2 89 57.3
CSS0038022 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 1.1e-17 93.2 89 57.3
Ciclev10023845m.g Citrus clementina HOM05D007096 ORTHO05D008288 1.6e-16 89.4 86 61.6
Nitab4.5_0000145g0050 Nicotiana tabacum HOM05D007096 ORTHO05D008288 1.6e-16 89.4 85 57.6
CiPaw.05G135100 Carya illinoinensis HOM05D007096 ORTHO05D008288 3.6e-16 88.2 92 52.2
CiPaw.06G085100 Carya illinoinensis HOM05D007096 ORTHO05D008288 3.6e-16 88.2 86 51.2
Peaxi162Scf00222g00814 Petunia axillaris HOM05D007096 ORTHO05D008288 1.4e-15 86.3 78 57.7
Cfa008979 Carpinus fangiana HOM05D007096 ORTHO05D008288 2.4e-15 85.5 89 53.9
CSS0030953 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 4.0e-15 84.7 92 53.3
Ciclev10033178m.g Citrus clementina HOM05D007096 ORTHO05D008288 4.0e-15 84.7 90 54.4
Haze_12011 Corylus avellana HOM05D007096 ORTHO05D008288 6.8e-15 84.0 89 51.7
Thecc.03G087500 Theobroma cacao HOM05D007096 ORTHO05D008288 1.2e-14 83.2 87 58.6
PGSC0003DMG400023201 Solanum tuberosum HOM05D007096 ORTHO05D008288 2.0e-14 82.4 88 52.3
Prupe.1G274800 Prunus persica HOM05D007096 ORTHO05D008288 3.4e-14 81.6 91 54.9
Rhsim12G0063900 Rhododendron simsii HOM05D007096 ORTHO05D008288 3.4e-14 81.6 98 49.0
Thecc.02G346100 Theobroma cacao HOM05D007096 ORTHO05D008288 5.8e-14 80.9 91 50.5
Prupe.5G193600 Prunus persica HOM05D007096 ORTHO05D008288 1.3e-13 79.7 85 51.8
RcHm_v2.0_Chr4g0439851 Rosa chinensis HOM05D007096 ORTHO05D008288 1.3e-13 79.7 90 53.3
QL10p017020 Quercus lobata HOM05D007096 ORTHO05D008288 1.7e-13 79.3 85 54.1
Sabra08G0063800 Salix brachista HOM05D007096 ORTHO05D008288 2.2e-13 79.0 87 49.4
Manes.05G101400 Manihot esculenta HOM05D007096 ORTHO05D008288 2.9e-13 78.6 89 50.6
Potri.010G169300 Populus trichocarpa HOM05D007096 ORTHO05D008288 2.9e-13 78.6 89 48.3
COL.COLO4_09292 Corchorus olitorius HOM05D007096 ORTHO05D008288 4.9e-13 77.8 86 57.0
Manes.14G078100 Manihot esculenta HOM05D007096 ORTHO05D008288 8.4e-13 77.0 87 49.4
Atru.chr9.225 Acer truncatum HOM05D007096 ORTHO05D008288 1.4e-12 76.3 84 56.0
RcHm_v2.0_Chr7g0181441 Rosa chinensis HOM05D007096 ORTHO05D008288 1.4e-12 76.3 85 50.6
Sabra10G0129100 Salix brachista HOM05D007096 ORTHO05D008288 1.4e-12 76.3 89 46.1
Ah.02g129680 Amaranthus hybridus HOM05D007096 ORTHO05D008288 3.2e-12 75.1 89 44.9
CSS0038065 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 3.2e-12 75.1 88 51.1
FAN13G0716 Fragaria x ananassa HOM05D007096 ORTHO05D008288 5.4e-12 74.3 84 50.0
Lj4g0000471 Lotus japonicus HOM05D007096 ORTHO05D008288 5.4e-12 74.3 86 52.3
FAN08G2460 Fragaria x ananassa HOM05D007096 ORTHO05D008288 7.1e-12 73.9 84 50.0
Potri.008G086100 Populus trichocarpa HOM05D007096 ORTHO05D008288 7.1e-12 73.9 89 46.1
Gohir.A12G165100 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.6e-11 72.8 89 51.7
Gorai.008G193000 Gossypium raimondii HOM05D007096 ORTHO05D008288 2.1e-11 72.4 87 52.9
Glyma.04G169400 Glycine max HOM05D007096 ORTHO05D008288 2.7e-11 72.0 86 51.2
Glyma.17G100200 Glycine max HOM05D007096 ORTHO05D008288 2.7e-11 72.0 90 51.1
Gohir.D12G168200 Gossypium hirsutum HOM05D007096 ORTHO05D008288 2.7e-11 72.0 89 50.6
Gorai.008G181100 Gossypium raimondii HOM05D007096 ORTHO05D008288 2.7e-11 72.0 89 50.6
Duzib268G0913 Durio zibethinus HOM05D007096 ORTHO05D008288 3.5e-11 71.6 91 48.4
Gohir.D12G179900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 3.5e-11 71.6 87 52.9
Phvul.009G187200 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 4.6e-11 71.2 86 48.8
Gohir.D05G304900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 6.0e-11 70.9 91 49.5
Gorai.009G324600 Gossypium raimondii HOM05D007096 ORTHO05D008288 6.0e-11 70.9 91 49.5
Lj1g0007220 Lotus japonicus HOM05D007096 ORTHO05D008288 6.0e-11 70.9 85 51.8
Manes.06G092300 Manihot esculenta HOM05D007096 ORTHO05D008288 6.0e-11 70.9 87 47.1
Oeu047297.1 Olea europaea HOM05D007096 ORTHO05D008288 6.0e-11 70.9 87 43.7
CiPaw.11G044600 Carya illinoinensis HOM05D007096 ORTHO05D008288 7.8e-11 70.5 85 48.2
Cc00_g23090 Coffea canephora HOM05D007096 ORTHO05D008288 7.8e-11 70.5 88 48.9
Glyma.06G194000 Glycine max HOM05D007096 ORTHO05D008288 1.0e-10 70.1 87 50.6
Gohir.A12G177500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.3e-10 69.7 87 51.7
Lsat_1_v5_gn_9_15420 Lactuca sativa HOM05D007096 ORTHO05D008288 1.7e-10 69.3 95 46.3
Phvul.003G190100 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 1.7e-10 69.3 91 51.6
Lsat_1_v5_gn_5_19601 Lactuca sativa HOM05D007096 ORTHO05D008288 2.3e-10 68.9 86 43.0
DCAR_031024 Daucus carota HOM05D007096 ORTHO05D008288 3.0e-10 68.6 89 41.6
Manes.01G185500 Manihot esculenta HOM05D007096 ORTHO05D008288 3.0e-10 68.6 89 46.1
Carub.0002s1626 Capsella rubella HOM05D009494 ORTHO05D011604 6.6e-10 67.4 75 45.3
Gohir.A05G183700 Gossypium hirsutum HOM05D007096 ORTHO05D008288 6.6e-10 67.4 91 48.4
arahy.Tifrunner.gnm1.ann1.2U9IP4 Arachis hypogaea HOM05D007096 ORTHO05D008288 1.1e-09 66.6 87 50.6
Peaxi162Scf00911g00042 Petunia axillaris HOM05D007096 ORTHO05D008288 1.1e-09 66.6 87 40.2
Gohir.D02G125800 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.5e-09 66.2 89 44.9
CiPaw.12G013300 Carya illinoinensis HOM05D007096 ORTHO05D008288 2.5e-09 65.5 85 45.9
Gorai.005G141500 Gossypium raimondii HOM05D007096 ORTHO05D008288 2.5e-09 65.5 89 43.8
Lalb_Chr04g0256051 Lupinus albus HOM05D015099 ORTHO05D008288 3.3e-09 65.1 91 42.9
Dinv19962 Davidia involucrata HOM05D007096 ORTHO05D008288 5.6e-09 64.3 74 54.1
Lalb_Chr13g0303241 Lupinus albus HOM05D007096 ORTHO05D008288 5.6e-09 64.3 85 45.9
DCAR_016556 Daucus carota HOM05D007096 ORTHO05D008288 7.3e-09 63.9 88 44.3
Eucgr.G02504 Eucalyptus grandis HOM05D007096 ORTHO05D008288 7.3e-09 63.9 89 43.8
THA.LOC104822126 Tarenaya hassleriana HOM05D009494 ORTHO05D011604 9.6e-09 63.5 76 43.4
A07p31500 Brassica napus HOM05D009494 ORTHO05D011604 2.1e-08 62.4 115 35.7
C06p36810 Brassica napus HOM05D009494 ORTHO05D011604 4.8e-08 61.2 118 33.9
BraA07t30782Z Brassica rapa HOM05D009494 ORTHO05D011604 4.8e-08 61.2 118 34.7
Sed0016779 Sechium edule HOM05D007096 ORTHO05D008288 6.2e-08 60.8 88 42.0
BcaC08g45881 Brassica carinata HOM05D009494 ORTHO05D011604 1.1e-07 60.1 118 33.9
BolC6t38790H Brassica oleracea HOM05D009494 ORTHO05D011604 1.1e-07 60.1 118 33.9
PGSC0003DMG400018456 Solanum tuberosum HOM05D007096 ORTHO05D008288 1.1e-07 60.1 91 46.2
AT1G69588 Arabidopsis thaliana HOM05D009494 ORTHO05D011604 1.4e-07 59.7 112 34.8
Sp5g24710 Schrenkiella parvula HOM05D009494 ORTHO05D011604 1.4e-07 59.7 75 41.3
CsaV3_2G010680 Cucumis sativus L. HOM05D007096 ORTHO05D008288 1.8e-07 59.3 89 46.1
Lalb_Chr10g0098271 Lupinus albus HOM05D015099 ORTHO05D008288 1.8e-07 59.3 88 39.8
Oeu054876.1 Olea europaea HOM05D007096 ORTHO05D008288 2.4e-07 58.9 91 44.0
BcaC03g15096 Brassica carinata HOM05D009494 ORTHO05D011604 3.1e-07 58.5 75 42.7
C02p26570 Brassica napus HOM05D009494 ORTHO05D011604 3.1e-07 58.5 75 42.7
BolC2t08728H Brassica oleracea HOM05D009494 ORTHO05D011604 3.1e-07 58.5 75 42.7
CARHR062540 Cardamine hirsuta HOM05D009494 ORTHO05D011604 3.1e-07 58.5 106 34.9
ClCG11G009950 Citrullus lanatus HOM05D007096 ORTHO05D008288 4.0e-07 58.2 90 44.4
Gohir.A04G147500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 4.0e-07 58.2 90 41.1
Sed0025401 Sechium edule HOM05D007096 ORTHO05D008288 6.9e-07 57.4 85 41.2
BcaB05g24463 Brassica carinata HOM05D009494 ORTHO05D011604 9.0e-07 57.0 76 43.4
Gohir.D04G191800 Gossypium hirsutum HOM05D007096 ORTHO05D008288 9.0e-07 57.0 90 38.9
BcaB03g15485 Brassica carinata HOM05D009494 ORTHO05D011604 1.2e-06 56.6 112 34.8
ClCG04G012240 Citrullus lanatus HOM05D007096 ORTHO05D008288 1.2e-06 56.6 89 40.4
DCAR_027414 Daucus carota HOM05D007096 ORTHO05D008288 1.2e-06 56.6 56 50.0
Solyc05g007650.1 Solanum lycopersicum HOM05D007096 ORTHO05D008288 1.2e-06 56.6 86 45.3
FAN04G0033 Fragaria x ananassa HOM05D007096 ORTHO05D008288 1.5e-06 56.2 80 42.5
Aa31LG4G11160 Aethionema arabicum HOM05D009494 ORTHO05D011604 2.0e-06 55.8 113 34.5
Glyma.02G107400 Glycine max HOM05D015099 ORTHO05D008288 2.0e-06 55.8 104 39.4
COL.COLO4_23015 Corchorus olitorius HOM05D007096 ORTHO05D008288 2.6e-06 55.5 80 46.2
Lalb_Chr12g0196861 Lupinus albus HOM05D007096 ORTHO05D008288 3.4e-06 55.1 88 45.5
Gorai.012G187200 Gossypium raimondii HOM05D007096 ORTHO05D008288 4.4e-06 54.7 90 37.8
Lsat_1_v5_gn_8_52521 Lactuca sativa HOM05D007096 ORTHO05D008288 4.4e-06 54.7 72 47.2
Sed0019012 Sechium edule HOM05D007096 ORTHO05D008288 5.8e-06 54.3 98 35.7
CsaV3_1G005510 Cucumis sativus L. HOM05D007096 ORTHO05D008288 7.6e-06 53.9 89 39.3
Eucgr.B03446 Eucalyptus grandis HOM05D007096 ORTHO05D008288 7.6e-06 53.9 91 40.7
SalBow7G4253 Salvia bowleyana HOM05D007096 ORTHO05D008288 7.6e-06 53.9 86 44.2


User provided reference genes

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