Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G0495 Trochodendron aralioides HOM05D004525 ORTHO05D005295 3.3e-65 251.5 122 100.0
MBI04_g25309_MAGBIO Magnolia biondii HOM05D004525 ORTHO05D005295 1.4e-15 86.7 105 55.2
TAR629G2664 Trochodendron aralioides HOM05D004525 ORTHO05D005295 5.3e-15 84.7 105 53.3
Nn3g18812 Nelumbo nucifera HOM05D004525 ORTHO05D005295 1.2e-14 83.6 106 55.7
Aqoxy3G00526 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 3.4e-14 82.0 105 52.4
Aqoxy5G04330 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 3.4e-14 82.0 105 52.4
PSO017G1681 Papaver somniferum HOM05D004525 ORTHO05D005295 1.7e-13 79.7 105 51.4
ATR0620G086 Amborella trichopoda HOM05D004525 ORTHO05D005295 3.8e-13 78.6 101 49.5
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla HOM05D004525 ORTHO05D005295 4.9e-13 78.2 104 51.9
PSO478G2085 Papaver somniferum HOM05D004525 ORTHO05D005295 4.9e-13 78.2 105 50.5
GSVIVG01019654001 Vitis vinifera HOM05D004525 ORTHO05D005295 6.4e-13 77.8 105 50.5
Migut.E00628 Erythranthe guttata HOM05D004525 ORTHO05D005295 1.9e-12 76.3 104 51.0
TAR375G0036 Trochodendron aralioides HOM05D004525 ORTHO05D005295 1.9e-12 76.3 100 54.0
Os09g0528300 Oryza sativa ssp. japonica HOM05D004525 ORTHO05D005295 4.2e-12 75.1 104 49.0
TWI56G0194 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 5.4e-12 74.7 103 49.5
Cc08_g16770 Coffea canephora HOM05D004525 ORTHO05D005295 7.1e-12 74.3 104 50.0
Dinv38179 Davidia involucrata HOM05D004525 ORTHO05D005295 7.1e-12 74.3 104 49.0
Cfa006748 Carpinus fangiana HOM05D004525 ORTHO05D005295 1.2e-11 73.6 104 49.0
Haze_04010 Corylus avellana HOM05D004525 ORTHO05D005295 1.2e-11 73.6 104 49.0
SGA_v2.0_scaffold14G07039 Striga asiatica HOM05D004525 ORTHO05D005295 1.2e-11 73.6 103 50.5
SGA_v2.0_scaffold36G14274 Striga asiatica HOM05D004525 ORTHO05D005295 1.2e-11 73.6 103 50.5
Zm00001eb319380 Zea mays HOM05D004525 ORTHO05D005295 1.2e-11 73.6 102 48.0
Zm00001eb103320 Zea mays HOM05D004525 ORTHO05D005295 1.6e-11 73.2 104 46.2
Actinidia22207 Actinidia chinensis HOM05D004525 ORTHO05D005295 2.1e-11 72.8 104 49.0
Cfa011920 Carpinus fangiana HOM05D004525 ORTHO05D005295 2.1e-11 72.8 104 49.0
Prupe.2G307200 Prunus persica HOM05D004525 ORTHO05D005295 2.1e-11 72.8 104 47.1
Duzib205G1187 Durio zibethinus HOM05D004525 ORTHO05D005295 2.7e-11 72.4 105 46.7
QL12p036922 Quercus lobata HOM05D004525 ORTHO05D005295 2.7e-11 72.4 105 46.7
Sp1g22150 Schrenkiella parvula HOM05D004525 ORTHO05D005295 2.7e-11 72.4 104 47.1
CSS0029651 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 3.5e-11 72.0 104 48.1
CSS0036474 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 3.5e-11 72.0 104 48.1
CSS0049671 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 3.5e-11 72.0 104 48.1
Duzib068G1021 Durio zibethinus HOM05D004525 ORTHO05D005295 3.5e-11 72.0 105 46.7
Gohir.A12G240200 Gossypium hirsutum HOM05D004525 ORTHO05D005295 3.5e-11 72.0 105 47.6
QL02p027997 Quercus lobata HOM05D004525 ORTHO05D005295 3.5e-11 72.0 105 46.7
Prupe.5G130000 Prunus persica HOM05D004525 ORTHO05D005295 4.6e-11 71.6 104 46.2
Thecc.03G220900 Theobroma cacao HOM05D004525 ORTHO05D005295 4.6e-11 71.6 105 46.7
Atru.chr9.1879 Acer truncatum HOM05D004525 ORTHO05D005295 6.0e-11 71.2 105 44.8
COL.COLO4_10799 Corchorus olitorius HOM05D004525 ORTHO05D005295 6.0e-11 71.2 105 48.6
MD06G1119500 Malus domestica HOM05D004525 ORTHO05D005295 6.0e-11 71.2 103 46.6
Sabra01G0060700 Salix brachista HOM05D004525 ORTHO05D005295 6.0e-11 71.2 104 47.1
CiPaw.12G077100 Carya illinoinensis HOM05D004525 ORTHO05D005295 7.9e-11 70.9 103 48.5
Ciclev10022441m.g Citrus clementina HOM05D004525 ORTHO05D005295 7.9e-11 70.9 105 45.7
FvH4_4g11450 Fragaria vesca HOM05D004525 ORTHO05D005295 7.9e-11 70.9 104 45.2
FAN07G0034 Fragaria x ananassa HOM05D004525 ORTHO05D005295 7.9e-11 70.9 104 45.2
FAN22G0758 Fragaria x ananassa HOM05D004525 ORTHO05D005295 7.9e-11 70.9 104 45.2
EL10Ac5g12425 Beta vulgaris HOM05D004525 ORTHO05D005295 1.0e-10 70.5 103 47.6
MD14G1136300 Malus domestica HOM05D004525 ORTHO05D005295 1.0e-10 70.5 104 48.1
Rhsim07G0078000 Rhododendron simsii HOM05D004525 ORTHO05D005295 1.0e-10 70.5 101 47.5
Cpa.g.sc27.182 Carica papaya HOM05D004525 ORTHO05D005295 1.3e-10 70.1 103 46.6
Lsat_1_v5_gn_3_14420 Lactuca sativa HOM05D004525 ORTHO05D005295 1.3e-10 70.1 104 47.1
AL1G39060 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 1.8e-10 69.7 104 46.2
Gorai.008G258800 Gossypium raimondii HOM05D004525 ORTHO05D005295 1.8e-10 69.7 105 46.7
Solyc08g065160.3 Solanum lycopersicum HOM05D004525 ORTHO05D005295 1.8e-10 69.7 104 47.1
Sopen08g018760 Solanum pennellii HOM05D004525 ORTHO05D005295 1.8e-10 69.7 104 47.1
PGSC0003DMG400029951 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.8e-10 69.7 104 47.1
TWI36G0523 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 1.8e-10 69.7 103 47.6
vmacro13851 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 1.8e-10 69.7 104 47.1
AT1G26665 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 2.3e-10 69.3 104 46.2
Potri.001G083801 Populus trichocarpa HOM05D004525 ORTHO05D005295 2.3e-10 69.3 105 45.7
THA.LOC104809303 Tarenaya hassleriana HOM05D004525 ORTHO05D005295 2.3e-10 69.3 104 45.2
HPP92_025871 Vanilla planifolia HOM05D004525 ORTHO05D005295 2.3e-10 69.3 101 45.5
ECA246G3328 Erigeron canadensis HOM05D004525 ORTHO05D005295 3.0e-10 68.9 104 46.2
Gohir.D12G241500 Gossypium hirsutum HOM05D004525 ORTHO05D005295 3.0e-10 68.9 105 46.7
unitig_744.g24303 Utricularia gibba HOM05D004525 ORTHO05D005295 3.0e-10 68.9 105 43.8
MSTRG.24865 Avicennia marina HOM05D004525 ORTHO05D005295 3.9e-10 68.6 103 47.6
Thhalv10008848m.g Eutrema salsugineum HOM05D004525 ORTHO05D005295 3.9e-10 68.6 104 44.2
Nitab4.5_0012632g0010 Nicotiana tabacum HOM05D004525 ORTHO05D005295 3.9e-10 68.6 106 46.2
Hund11348 Selenicereus undatus HOM05D004525 ORTHO05D005295 3.9e-10 68.6 104 45.2
BcaC06g35131 Brassica carinata HOM05D004525 ORTHO05D005295 5.1e-10 68.2 105 42.9
Carub.0001s2436 Capsella rubella HOM05D004525 ORTHO05D005295 5.1e-10 68.2 104 44.2
Nitab4.5_0001367g0040 Nicotiana tabacum HOM05D004525 ORTHO05D005295 5.1e-10 68.2 104 47.1
RcHm_v2.0_Chr1g0332661 Rosa chinensis HOM05D004525 ORTHO05D005295 5.1e-10 68.2 103 45.6
Potri.003G146900 Populus trichocarpa HOM05D004525 ORTHO05D005295 6.7e-10 67.8 104 45.2
SalBow6G4763 Salvia bowleyana HOM05D004525 ORTHO05D005295 6.7e-10 67.8 104 46.2
CiPaw.11G112000 Carya illinoinensis HOM05D004525 ORTHO05D005295 8.7e-10 67.4 104 47.1
HanXRQChr17g0534221 Helianthus annuus HOM05D004525 ORTHO05D005295 8.7e-10 67.4 104 46.2
Manes.09G101000 Manihot esculenta HOM05D004525 ORTHO05D005295 8.7e-10 67.4 103 46.6
Peaxi162Scf01444g00013 Petunia axillaris HOM05D004525 ORTHO05D005295 8.7e-10 67.4 98 44.9
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 1.1e-09 67.0 105 42.9
Lj8A200T57 Lonicera japonica HOM05D004525 ORTHO05D005295 1.1e-09 67.0 104 47.1
unitig_21.g20890 Utricularia gibba HOM05D004525 ORTHO05D005295 1.1e-09 67.0 105 43.8
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 1.5e-09 66.6 105 41.9
CARHR212640 Cardamine hirsuta HOM05D004525 ORTHO05D005295 1.9e-09 66.2 104 45.2
CsaV3_3G000870 Cucumis sativus L. HOM05D004525 ORTHO05D005295 1.9e-09 66.2 104 46.2
PGR031G2275 Punica granatum HOM05D004525 ORTHO05D005295 1.9e-09 66.2 104 45.2
Aa31LG9G260 Aethionema arabicum HOM05D004525 ORTHO05D005295 2.5e-09 65.9 103 45.6
CARHR025300 Cardamine hirsuta HOM05D004525 ORTHO05D005295 2.5e-09 65.9 103 48.5
ClCG10G000810 Citrullus lanatus HOM05D004525 ORTHO05D005295 2.5e-09 65.9 104 45.2
DCAR_006547 Daucus carota HOM05D004525 ORTHO05D005295 2.5e-09 65.9 114 41.2
Sabra03G0106900 Salix brachista HOM05D004525 ORTHO05D005295 3.3e-09 65.5 104 44.2
BcaB03g14082 Brassica carinata HOM05D004525 ORTHO05D005295 4.3e-09 65.1 104 42.3
AUR62007057 Chenopodium quinoa HOM05D004525 ORTHO05D005295 4.3e-09 65.1 117 40.2
RcHm_v2.0_Chr6g0273561 Rosa chinensis HOM05D004525 ORTHO05D005295 4.3e-09 65.1 103 43.7
TPR.G15828 Trifolium pratense HOM05D004525 ORTHO05D005295 4.3e-09 65.1 106 43.4
vmacro11499 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 4.3e-09 65.1 110 45.5
Ca_02991_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 5.6e-09 64.7 106 42.5
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 7.4e-09 64.3 118 39.8
DCAR_011870 Daucus carota HOM05D004525 ORTHO05D005295 7.4e-09 64.3 119 40.3
Psat7g073160 Pisum sativum HOM05D004525 ORTHO05D005295 9.6e-09 63.9 105 42.9
Sed0024458 Sechium edule HOM05D004525 ORTHO05D005295 9.6e-09 63.9 103 44.7
TPR.G11962 Trifolium pratense HOM05D004525 ORTHO05D005295 9.6e-09 63.9 106 43.4
AT5G41910 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 1.3e-08 63.5 98 41.8
Eucgr.C04229 Eucalyptus grandis HOM05D004525 ORTHO05D005295 1.3e-08 63.5 103 43.7
Sc01g0010720 Simmondsia chinensis HOM05D004525 ORTHO05D005295 1.3e-08 63.5 104 45.2
CDE07G1557 Ceratophyllum demersum HOM05D004525 ORTHO05D005295 1.6e-08 63.2 104 42.3
AUR62019920 Chenopodium quinoa HOM05D004525 ORTHO05D005295 1.6e-08 63.2 103 41.7
Ca_17957_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 1.6e-08 63.2 106 41.5
AL7G47302 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 2.8e-08 62.4 98 40.8
VMungo0251G0643 Vigna mungo HOM05D004525 ORTHO05D005295 3.7e-08 62.0 103 45.6
MSTRG.12201 Avicennia marina HOM05D004525 ORTHO05D005295 4.8e-08 61.6 104 43.3
FAN17G2704 Fragaria x ananassa HOM05D004525 ORTHO05D005295 4.8e-08 61.6 40 75.0
Lalb_Chr13g0294931 Lupinus albus HOM05D004525 ORTHO05D005295 6.2e-08 61.2 104 46.2
BraA09t39504Z Brassica rapa HOM05D004525 ORTHO05D005295 8.1e-08 60.8 106 42.5
Glyma.08G296500 Glycine max HOM05D004525 ORTHO05D005295 8.1e-08 60.8 105 40.0
Haze_09177 Corylus avellana HOM05D004525 ORTHO05D005295 1.1e-07 60.5 96 45.8
Medtr8g085570 Medicago truncatula HOM05D004525 ORTHO05D005295 1.1e-07 60.5 105 43.8
Lj4g0018067 Lotus japonicus HOM05D004525 ORTHO05D005295 1.4e-07 60.1 103 43.7
Lalb_Chr12g0205381 Lupinus albus HOM05D004525 ORTHO05D005295 2.4e-07 59.3 107 42.1
Phvul.003G069600 Phaseolus vulgaris HOM05D004525 ORTHO05D005295 3.1e-07 58.9 103 44.7
Actinidia27285 Actinidia chinensis HOM05D004525 ORTHO05D005295 6.9e-07 57.8 40 70.0
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea HOM05D004525 ORTHO05D005295 9.0e-07 57.4 98 39.8
CANSAT56G2042 Cannabis sativa HOM05D004525 ORTHO05D005295 9.0e-07 57.4 98 42.9
Glyma.18G125700 Glycine max HOM05D004525 ORTHO05D005295 9.0e-07 57.4 102 42.2
C05p24330 Brassica napus HOM05D004525 ORTHO05D005295 1.5e-06 56.6 102 41.2
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea HOM05D004525 ORTHO05D005295 2.0e-06 56.2 98 38.8
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 3.4e-06 55.5 103 38.8
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 5.8e-06 54.7 96 41.7
Ah.12g053230 Amaranthus hybridus HOM05D004525 ORTHO05D005295 7.6e-06 54.3 103 38.8
CAN.G6.3 Capsicum annuum HOM05D004525 ORTHO05D005295 1.0e-05 53.9 89 46.1


User provided reference genes

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