Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G0473 Trochodendron aralioides HOM05D005939 ORTHO05D007412 1.1e-39 166.0 77 100.0
TAR626G1098 Trochodendron aralioides HOM05D001154 ORTHO05D010892 4.5e-36 154.1 75 94.7
TAR365G1222 Trochodendron aralioides HOM05D001154 ORTHO05D010892 1.3e-35 152.5 75 93.3
TAR371G0104 Trochodendron aralioides HOM05D000577 ORTHO05D001093 4.9e-27 124.0 61 95.1
TAR365G0833 Trochodendron aralioides HOM05D005939 ORTHO05D007412 5.5e-26 120.6 61 93.4
Ciclev10021893m.g Citrus clementina HOM05D005939 ORTHO05D007412 2.8e-22 108.2 61 80.3
Dinv44170 Davidia involucrata HOM05D005939 ORTHO05D007412 2.4e-21 105.1 61 78.7
Cpa.g.sc9.337 Carica papaya HOM05D005939 ORTHO05D007412 3.1e-21 104.8 61 80.3
Prupe.1G203000 Prunus persica HOM05D005939 ORTHO05D007412 3.1e-21 104.8 61 77.0
QL10p052591 Quercus lobata HOM05D005939 ORTHO05D007412 5.3e-21 104.0 61 77.0
arahy.Tifrunner.gnm1.ann1.2A1NT4 Arachis hypogaea HOM05D005939 ORTHO05D007412 6.9e-21 103.6 61 77.0
arahy.Tifrunner.gnm1.ann1.K9Q8M8 Arachis hypogaea HOM05D005939 ORTHO05D007412 6.9e-21 103.6 61 77.0
CiPaw.01G172900 Carya illinoinensis HOM05D005939 ORTHO05D007412 6.9e-21 103.6 61 77.0
GSVIVG01038097001 Vitis vinifera HOM05D005939 ORTHO05D007412 9.0e-21 103.2 61 77.0
arahy.Tifrunner.gnm1.ann1.AL6ICI Arachis hypogaea HOM05D005939 ORTHO05D007412 1.5e-20 102.4 61 75.4
RcHm_v2.0_Chr4g0406301 Rosa chinensis HOM05D005939 ORTHO05D007412 2.0e-20 102.1 61 75.4
TWI38G2333 Tripterygium wilfordii HOM05D005939 ORTHO05D007412 2.0e-20 102.1 61 75.4
CSS0033753 Camellia sinensis var. sinensis HOM05D005939 ORTHO05D007412 2.6e-20 101.7 60 76.7
Hma1.2p1_1220F.1_g268050 Hydrangea macrophylla HOM05D005939 ORTHO05D007412 2.6e-20 101.7 61 75.4
MELO3C017776.2 Cucumis melo HOM05D005939 ORTHO05D007412 5.9e-20 100.5 61 77.0
FvH4_4g10650 Fragaria vesca HOM05D005939 ORTHO05D007412 5.9e-20 100.5 65 72.3
FAN07G1487 Fragaria x ananassa HOM05D005939 ORTHO05D007412 5.9e-20 100.5 65 72.3
FAN12G0599 Fragaria x ananassa HOM05D005939 ORTHO05D007412 5.9e-20 100.5 65 72.3
FAN12G1526 Fragaria x ananassa HOM05D005939 ORTHO05D007412 5.9e-20 100.5 65 72.3
FAN12G3158 Fragaria x ananassa HOM05D005939 ORTHO05D007412 5.9e-20 100.5 65 72.3
Actinidia27098 Actinidia chinensis HOM05D005939 ORTHO05D007412 7.6e-20 100.1 60 76.7
Ah.13g073680 Amaranthus hybridus HOM05D005939 ORTHO05D007412 7.6e-20 100.1 60 78.3
Gohir.A02G092400 Gossypium hirsutum HOM05D005939 ORTHO05D007412 1.0e-19 99.8 54 83.3
Gohir.D02G110500 Gossypium hirsutum HOM05D005939 ORTHO05D007412 1.0e-19 99.8 54 83.3
Gorai.005G125400 Gossypium raimondii HOM05D005939 ORTHO05D007412 1.0e-19 99.8 54 83.3
PSO017G1523 Papaver somniferum HOM05D005939 ORTHO05D007412 1.0e-19 99.8 61 77.0
Thecc.04G170700 Theobroma cacao HOM05D005939 ORTHO05D007412 1.0e-19 99.8 61 75.4
vmacro00653 Vaccinium macrocarpon HOM05D005939 ORTHO05D007412 1.7e-19 99.0 61 73.8
Zm00001eb037280 Zea mays HOM05D005939 ORTHO05D007412 1.7e-19 99.0 61 75.4
CANSAT64G1160 Cannabis sativa HOM05D005939 ORTHO05D007412 2.2e-19 98.6 61 75.4
Manes.04G037900 Manihot esculenta HOM05D005939 ORTHO05D007412 2.2e-19 98.6 61 73.8
VMungo1127G1625 Vigna mungo HOM05D005939 ORTHO05D007412 2.2e-19 98.6 60 76.7
PSO675G4893 Papaver somniferum HOM05D005939 ORTHO05D007412 2.9e-19 98.2 61 75.4
Psat7g208400 Pisum sativum HOM05D005939 ORTHO05D007412 2.9e-19 98.2 62 75.8
Atru.chr4.1353 Acer truncatum HOM05D005939 ORTHO05D007412 3.8e-19 97.8 61 73.8
ClCG07G015100 Citrullus lanatus HOM05D005939 ORTHO05D007412 3.8e-19 97.8 61 72.1
CsaV3_4G002650 Cucumis sativus L. HOM05D005939 ORTHO05D007412 3.8e-19 97.8 61 73.8
Glyma.11G124900 Glycine max HOM05D005939 ORTHO05D007412 3.8e-19 97.8 60 76.7
Glyma.12G049500 Glycine max HOM05D005939 ORTHO05D007412 3.8e-19 97.8 60 76.7
Phvul.011G051700 Phaseolus vulgaris HOM05D005939 ORTHO05D007412 5.0e-19 97.4 60 76.7
Medtr4g068190 Medicago truncatula HOM05D005939 ORTHO05D007412 6.5e-19 97.1 62 75.8
Sed0015623 Sechium edule HOM05D005939 ORTHO05D007412 6.5e-19 97.1 61 73.8
Ca_20809_v3 Cicer arietinum L. HOM05D005939 ORTHO05D007412 1.1e-18 96.3 57 80.7
CDE02G1670 Ceratophyllum demersum HOM05D005939 ORTHO05D007412 1.4e-18 95.9 65 66.2
Eucgr.C02176 Eucalyptus grandis HOM05D005939 ORTHO05D007412 1.4e-18 95.9 56 78.6
Sc05g0005150 Simmondsia chinensis HOM05D005939 ORTHO05D007412 1.4e-18 95.9 60 71.7
Lj2C294T20 Lonicera japonica HOM05D005939 ORTHO05D007412 2.5e-18 95.1 58 72.4
Lj3g0005991 Lotus japonicus HOM05D005939 ORTHO05D007412 2.5e-18 95.1 56 78.6
Potri.017G017500 Populus trichocarpa HOM05D005939 ORTHO05D007412 2.5e-18 95.1 58 75.9
TPR.G34240 Trifolium pratense HOM05D005939 ORTHO05D007412 2.5e-18 95.1 62 74.2
Migut.N03077 Erythranthe guttata HOM05D005939 ORTHO05D007412 3.2e-18 94.7 61 68.9
CAN.G1263.30 Capsicum annuum HOM05D005939 ORTHO05D007412 4.2e-18 94.4 61 72.1
Gohir.D07G207866 Gossypium hirsutum HOM05D005939 ORTHO05D007412 5.5e-18 94.0 54 79.6
Nitab4.5_0000147g0370 Nicotiana tabacum HOM05D005939 ORTHO05D007412 5.5e-18 94.0 60 73.3
EL10Ac3g06033 Beta vulgaris HOM05D005939 ORTHO05D007412 7.2e-18 93.6 56 75.0
THA.LOC104803948 Tarenaya hassleriana HOM05D005939 ORTHO05D007412 7.2e-18 93.6 61 70.5
MSTRG.22020 Avicennia marina HOM05D005939 ORTHO05D007412 9.3e-18 93.2 61 68.9
Os08g0541400 Oryza sativa ssp. japonica HOM05D005939 ORTHO05D007412 9.3e-18 93.2 54 79.6
Solyc04g015040.3 Solanum lycopersicum HOM05D005939 ORTHO05D007412 1.2e-17 92.8 61 70.5
Sopen04g007060 Solanum pennellii HOM05D005939 ORTHO05D007412 1.2e-17 92.8 61 70.5
PGSC0003DMG400015011 Solanum tuberosum HOM05D005939 ORTHO05D007412 1.2e-17 92.8 61 70.5
ECA238G2261 Erigeron canadensis HOM05D005939 ORTHO05D007412 1.6e-17 92.4 61 68.9
AUR62002369 Chenopodium quinoa HOM05D005939 ORTHO05D007412 2.1e-17 92.0 53 77.4
AUR62023817 Chenopodium quinoa HOM05D000031 ORTHO05D007412 2.1e-17 92.0 53 77.4
HanXRQChr14g0433821 Helianthus annuus HOM05D005939 ORTHO05D007412 2.1e-17 92.0 61 68.9
Lalb_Chr03g0026021 Lupinus albus HOM05D005939 ORTHO05D007412 2.1e-17 92.0 53 79.2
Hund03189 Selenicereus undatus HOM05D005939 ORTHO05D007412 2.1e-17 92.0 66 69.7
Cc06_g20200 Coffea canephora HOM05D005939 ORTHO05D007412 2.7e-17 91.7 61 67.2
Sabra17G0005000 Salix brachista HOM05D005939 ORTHO05D007412 2.7e-17 91.7 58 74.1
Sabra17G0013700 Salix brachista HOM05D005939 ORTHO05D007412 2.7e-17 91.7 58 74.1
Duzib212G0518 Durio zibethinus HOM05D005939 ORTHO05D007412 3.6e-17 91.3 61 72.1
Peaxi162Scf00811g00112 Petunia axillaris HOM05D005939 ORTHO05D007412 3.6e-17 91.3 53 77.4
ATR0743G264 Amborella trichopoda HOM05D005939 ORTHO05D007412 4.6e-17 90.9 50 78.0
Aqoxy2G04151 Aquilegia oxysepala HOM05D005939 ORTHO05D007412 6.1e-17 90.5 61 67.2
Potri.007G134600 Populus trichocarpa HOM05D005939 ORTHO05D007412 6.1e-17 90.5 62 64.5
Gorai.001G234400 Gossypium raimondii HOM05D005939 ORTHO05D007412 7.9e-17 90.1 51 80.4
Nitab4.5_0006294g0010 Nicotiana tabacum HOM05D005939 ORTHO05D007412 7.9e-17 90.1 54 75.9
unitig_578.g16716 Utricularia gibba HOM05D005939 ORTHO05D007412 7.9e-17 90.1 61 70.5
Lsat_1_v5_gn_2_34361 Lactuca sativa HOM05D005939 ORTHO05D007412 2.3e-16 88.6 61 63.9
AT2G43560 Arabidopsis thaliana HOM05D005939 ORTHO05D007412 5.1e-16 87.4 60 66.7
AL4G42360 Arabidopsis lyrata HOM05D005939 ORTHO05D007412 1.1e-15 86.3 57 68.4
Haze_01409 Corylus avellana HOM05D005939 ORTHO05D007412 1.1e-15 86.3 91 49.5
Sp4g25670 Schrenkiella parvula HOM05D005939 ORTHO05D007412 1.1e-15 86.3 56 69.6
Carub.0004s2605 Capsella rubella HOM05D005939 ORTHO05D007412 1.5e-15 85.9 60 65.0
Thhalv10001621m.g Eutrema salsugineum HOM05D005939 ORTHO05D007412 1.9e-15 85.5 56 69.6
HPP92_001251 Vanilla planifolia HOM05D005939 ORTHO05D007412 1.9e-15 85.5 61 63.9
Aa31LG1G25290 Aethionema arabicum HOM05D005939 ORTHO05D007412 3.3e-15 84.7 61 62.3
BcaC02g07165 Brassica carinata HOM05D005939 ORTHO05D007412 4.3e-15 84.3 53 69.8
A04p32840 Brassica napus HOM05D005939 ORTHO05D007412 4.3e-15 84.3 53 69.8
C04p70550 Brassica napus HOM05D005939 ORTHO05D007412 4.3e-15 84.3 53 69.8
BolC4t28556H Brassica oleracea HOM05D005939 ORTHO05D007412 4.3e-15 84.3 53 69.8
BraA04t18746Z Brassica rapa HOM05D005939 ORTHO05D007412 4.3e-15 84.3 53 69.8
Haze_01405 Corylus avellana HOM05D005939 ORTHO05D007412 4.3e-15 84.3 86 50.0
BcaB06g29327 Brassica carinata HOM05D005939 ORTHO05D007412 5.7e-15 84.0 56 66.1
HPP92_001268 Vanilla planifolia HOM05D005939 ORTHO05D007412 5.7e-15 84.0 61 62.3
PGR044G0374 Punica granatum HOM05D005939 ORTHO05D007412 6.3e-14 80.5 85 49.4
Oeu032137.1 Olea europaea HOM05D005939 ORTHO05D007412 8.2e-14 80.1 60 63.3
SMO145G0045 Selaginella moellendorffii HOM05D005939 ORTHO05D007412 6.9e-13 77.0 53 64.2
Mapoly0034s0118 Marchantia polymorpha HOM05D005939 ORTHO05D007412 2.0e-12 75.5 53 60.4
arahy.Tifrunner.gnm1.ann1.4S56Q7 Arachis hypogaea HOM05D005939 ORTHO05D026929 7.7e-12 73.6 49 71.4
Pp3c4_8140 Physcomitrium patens HOM05D005939 ORTHO05D007412 9.4e-10 66.6 54 57.4
AagrBONN_evm.TU.Sc2ySwM_228.5810 Anthoceros agrestis HOM05D005939 ORTHO05D007412 1.6e-09 65.9 50 58.0
TAR625G1104 Trochodendron aralioides HOM05D000577 ORTHO05D001093 1.8e-08 62.4 28 96.4
CBR_g49189 Chara braunii HOM05D005939 ORTHO05D007412 6.7e-08 60.5 55 52.7
TAR362G1321 Trochodendron aralioides HOM05D001154 ORTHO05D010892 2.0e-07 58.9 28 92.9
Cre12.g530300 Chlamydomonas reinhardtii HOM05D005939 ORTHO05D007412 9.7e-07 56.6 53 47.2
arahy.Tifrunner.gnm1.ann1.6CLX5T Arachis hypogaea HOM05D005939 ORTHO05D026929 1.3e-06 56.2 28 85.7
MCO01G461 Micromonas commoda HOM05D005939 ORTHO05D007412 2.2e-06 55.5 65 44.6
Hma1.2p1_1220F.1_g268040 Hydrangea macrophylla HOM05D005939 ORTHO05D007412 3.7e-06 54.7 34 73.5
SGA_v2.0_scaffold19G08830 Striga asiatica HOM05D005939 ORTHO05D007412 3.7e-06 54.7 31 77.4
CARHR138670 Cardamine hirsuta HOM05D005939 ORTHO05D007412 4.8e-06 54.3 28 85.7
arahy.Tifrunner.gnm1.ann1.D82PE3 Arachis hypogaea HOM05D005939 ORTHO05D007412 6.3e-06 53.9 34 70.6
arahy.Tifrunner.gnm1.ann1.NSWK12 Arachis hypogaea HOM05D005939 ORTHO05D007412 6.3e-06 53.9 28 82.1


User provided reference genes

Program Settings