Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 5.6e-138 494.2 237 100.0
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 2.0e-74 283.1 249 60.6
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 1.3e-70 270.4 245 62.4
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 2.3e-67 259.6 236 60.6
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 2.0e-66 256.5 234 60.7
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 1.3e-65 253.8 218 63.8
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 8.3e-65 251.1 225 60.4
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 4.1e-64 248.8 223 60.5
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 4.1e-64 248.8 223 60.5
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 2.0e-63 246.5 221 60.2
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 1.7e-62 243.4 229 58.1
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 6.5e-62 241.5 222 59.9
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 2.5e-61 239.6 225 59.6
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 1.2e-60 237.3 225 58.7
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 1.2e-60 237.3 229 59.0
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 5.2e-59 231.9 224 59.4
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 1.2e-58 230.7 250 54.0
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 1.5e-58 230.3 236 56.4
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 9.8e-58 227.6 230 57.0
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 1.3e-57 227.3 240 56.7
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 1.3e-57 227.3 221 57.9
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 3.1e-56 222.6 225 57.3
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 1.2e-55 220.7 233 54.1
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 2.7e-55 219.5 214 57.0
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 5.9e-55 218.4 229 53.7
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 1.7e-54 216.9 231 54.5
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 1.7e-54 216.9 228 55.3
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 6.6e-54 214.9 229 53.7
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 6.6e-54 214.9 232 54.7
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 1.9e-53 213.4 226 55.3
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 3.3e-53 212.6 230 53.5
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 4.2e-53 212.2 229 53.3
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 7.2e-53 211.5 251 51.0
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 1.6e-52 210.3 224 54.5
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 2.1e-52 209.9 239 55.6
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 2.1e-52 209.9 220 57.7
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 3.6e-52 209.1 232 52.6
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 6.1e-52 208.4 240 51.2
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 1.8e-51 206.8 232 59.1
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 4.0e-51 205.7 242 51.2
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 5.2e-51 205.3 230 59.6
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 2.0e-50 203.4 234 52.6
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 1.7e-49 200.3 246 50.8
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 2.2e-49 199.9 252 51.6
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 4.9e-49 198.7 229 51.5
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 2.0e-47 193.4 236 51.3
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 3.5e-47 192.6 196 56.6
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 1.0e-46 191.0 231 51.5
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 1.3e-46 190.7 222 54.1
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 1.7e-46 190.3 239 48.5
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 2.3e-46 189.9 238 49.2
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 1.9e-45 186.8 223 50.2
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 7.3e-45 184.9 248 48.0
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 1.2e-44 184.1 243 49.0
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 1.6e-44 183.7 183 55.7
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 1.6e-44 183.7 232 49.6
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 2.1e-44 183.3 280 46.1
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 2.1e-44 183.3 280 46.1
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 4.7e-44 182.2 222 50.0
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 6.1e-44 181.8 238 50.8
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 4.0e-43 179.1 221 51.6
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 1.5e-42 177.2 229 48.5
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 9.8e-42 174.5 286 44.1
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 2.9e-41 172.9 226 49.6
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 1.9e-40 170.2 202 52.0
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 1.9e-40 170.2 226 45.1
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 1.9e-40 170.2 267 43.8
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 1.9e-40 170.2 234 45.3
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 3.2e-40 169.5 231 46.8
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 9.2e-40 167.9 195 51.8
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 2.0e-39 166.8 244 47.1
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 7.8e-39 164.9 198 50.5
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.0e-38 164.5 281 43.4
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 1.0e-38 164.5 263 45.2
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 3.9e-38 162.5 211 45.5
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 3.9e-38 162.5 241 43.6
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 8.6e-38 161.4 226 46.9
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 8.6e-38 161.4 198 50.5
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 7.3e-37 158.3 223 46.6
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 1.2e-36 157.5 229 45.9
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 2.1e-36 156.8 203 48.8
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 8.0e-36 154.8 212 46.2
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 4.0e-35 152.5 223 44.8
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 5.2e-35 152.1 214 44.9
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 5.2e-35 152.1 210 48.6
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 6.8e-35 151.8 229 44.1
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 8.9e-35 151.4 220 45.0
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 8.9e-35 151.4 220 45.0
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 8.9e-35 151.4 244 42.6
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 2.0e-34 150.2 234 42.7
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 2.6e-34 149.8 213 46.9
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 3.4e-34 149.4 214 47.7
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 5.8e-34 148.7 223 43.9
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 2.9e-33 146.4 175 52.6
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 3.7e-33 146.0 201 47.3
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 3.7e-33 146.0 224 42.0
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 6.4e-33 145.2 204 46.6
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 2.4e-32 143.3 219 43.8
Dinv21080 Davidia involucrata HOM05D004123 ORTHO05D004768 3.5e-31 139.4 237 40.5
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 7.8e-31 138.3 164 53.7
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 7.8e-31 138.3 234 42.3
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 1.1e-29 134.4 120 60.0
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 3.3e-29 132.9 238 38.7
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 9.5e-29 131.3 235 40.0
Sabra10G0094200 Salix brachista HOM05D004123 ORTHO05D004768 9.5e-29 131.3 83 72.3
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 1.2e-28 131.0 235 41.3
CSS0039482 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 1.6e-28 130.6 76 81.6
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 3.6e-28 129.4 211 41.2
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 8.1e-28 128.3 214 41.1
Cfa018590 Carpinus fangiana HOM05D004123 ORTHO05D004768 1.1e-27 127.9 149 50.3
VMungo0720G2589 Vigna mungo HOM05D004123 ORTHO05D004768 2.3e-27 126.7 223 41.3
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 4.0e-27 125.9 168 50.6
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 4.9e-25 119.0 148 52.0
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 4.9e-25 119.0 148 52.0
Nitab4.5_0003373g0030 Nicotiana tabacum HOM05D004123 ORTHO05D004768 6.4e-25 118.6 233 38.2
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 6.4e-25 118.6 176 44.9
Dinv31634 Davidia involucrata HOM05D004123 ORTHO05D004768 1.1e-24 117.9 147 48.3
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 2.4e-24 116.7 198 42.9
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 2.4e-24 116.7 107 62.6
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 3.5e-23 112.8 213 43.7
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 6.0e-23 112.1 151 51.0
Potri.010G124200 Populus trichocarpa HOM05D004123 ORTHO05D004768 1.0e-22 111.3 156 46.8
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 2.3e-22 110.2 170 47.1
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 8.6e-22 108.2 209 39.7
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 4.3e-21 105.9 161 47.8
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 2.8e-20 103.2 216 42.1
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 4.7e-20 102.4 217 38.2
Nitab4.5_0000791g0080 Nicotiana tabacum HOM05D004123 ORTHO05D004768 4.7e-20 102.4 167 43.7
BolC8t49237H Brassica oleracea HOM05D004123 ORTHO05D004768 6.2e-20 102.1 232 37.9
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 2.6e-18 96.7 166 44.0
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 2.6e-18 96.7 166 44.0
COL.COLO4_03992 Corchorus olitorius HOM05D004123 ORTHO05D004768 4.4e-18 95.9 238 34.0
Ca_03055_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 7.6e-18 95.1 161 41.6
BcaB03g13142 Brassica carinata HOM05D004123 ORTHO05D004768 1.7e-17 94.0 224 37.5
SalBow8G0756 Salvia bowleyana HOM05D004123 ORTHO05D004768 2.2e-17 93.6 214 36.4
BcaC05g25048 Brassica carinata HOM05D004123 ORTHO05D004768 3.2e-16 89.7 100 54.0
RcHm_v2.0_Chr4g0435091 Rosa chinensis HOM05D004123 ORTHO05D004768 1.6e-15 87.4 156 41.7
Lalb_Chr02g0145931 Lupinus albus HOM05D004123 ORTHO05D004768 6.0e-15 85.5 165 40.6
Peaxi162Scf00382g00826 Petunia axillaris HOM05D004123 ORTHO05D004768 6.0e-15 85.5 93 50.5
Zm00001eb125440 Zea mays HOM05D004123 ORTHO05D004768 1.0e-14 84.7 160 39.4
Sopen05g005180 Solanum pennellii HOM05D004123 ORTHO05D004768 5.1e-14 82.4 180 34.4
THA.LOC104805006 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 2.5e-13 80.1 222 34.2
arahy.Tifrunner.gnm1.ann1.U1U6XH Arachis hypogaea HOM05D004123 ORTHO05D004768 1.1e-11 74.7 203 34.5
Migut.L01390 Erythranthe guttata HOM05D004123 ORTHO05D004768 2.4e-11 73.6 170 37.1
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 2.6e-10 70.1 129 40.3
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 5.8e-10 68.9 98 43.9
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 7.6e-10 68.6 43 72.1
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 7.6e-10 68.6 43 72.1
arahy.Tifrunner.gnm1.ann1.A2D7P4 Arachis hypogaea HOM05D004123 ORTHO05D004768 1.3e-09 67.8 200 34.0
arahy.Tifrunner.gnm1.ann1.1XFG43 Arachis hypogaea HOM05D004123 ORTHO05D004768 4.9e-09 65.9 212 31.6
Pp3c23_800 Physcomitrium patens HOM05D059517 ORTHO05D004768 4.9e-09 65.9 42 69.0
Ca_11169_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 8.4e-09 65.1 218 31.7
CSS0040364 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 2.4e-08 63.5 147 36.1
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 2.4e-08 63.5 43 62.8
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 4.2e-08 62.8 44 61.4
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 4.2e-08 62.8 41 65.9
ECA233G4891 Erigeron canadensis HOM05D004123 ORTHO05D004768 7.1e-08 62.0 92 46.7
Medtr1g110740 Medicago truncatula HOM05D004123 ORTHO05D004768 7.1e-08 62.0 215 28.8
SEGI_26835 Sequoiadendron giganteum HOM05D004123 ORTHO05D004768 3.0e-06 56.6 102 34.3
BraA02t06569Z Brassica rapa HOM05D004123 ORTHO05D004768 3.9e-06 56.2 138 32.6
DCAR_007247 Daucus carota HOM05D004123 ORTHO05D004768 3.9e-06 56.2 147 29.9
ATR1125G014 Amborella trichopoda HOM05D001250 ORTHO05D000627 6.6e-06 55.5 79 39.2
SEGI_27536 Sequoiadendron giganteum HOM05D004123 ORTHO05D000239 6.6e-06 55.5 42 61.9
THA.LOC104823317 Tarenaya hassleriana HOM05D000333 ORTHO05D000190 6.6e-06 55.5 118 29.7


User provided reference genes

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