Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 1.7e-80 302.8 165 100.0
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 1.8e-42 176.4 199 55.8
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 2.3e-42 176.0 194 56.7
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 6.8e-42 174.5 184 57.1
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 7.6e-41 171.0 197 54.8
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 1.4e-39 166.8 191 55.0
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 2.4e-39 166.0 193 52.3
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 3.2e-39 165.6 183 57.9
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 5.4e-39 164.9 194 56.2
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 5.4e-39 164.9 188 55.3
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 7.1e-39 164.5 189 52.4
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 7.1e-39 164.5 190 55.3
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 1.2e-38 163.7 190 53.7
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 1.6e-38 163.3 190 56.3
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 2.1e-38 162.9 188 54.8
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 2.7e-38 162.5 208 53.4
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 2.7e-38 162.5 187 55.6
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 2.7e-38 162.5 200 52.5
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 2.7e-38 162.5 190 53.2
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 1.7e-37 159.8 197 51.3
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 2.3e-37 159.5 190 53.7
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 2.5e-36 156.0 216 46.8
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 2.1e-35 152.9 203 50.2
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 2.1e-35 152.9 190 50.5
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 4.7e-35 151.8 210 48.6
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 6.2e-35 151.4 197 48.2
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 1.4e-34 150.2 192 50.5
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 4.0e-34 148.7 188 52.7
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 5.2e-34 148.3 189 50.8
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 5.2e-34 148.3 183 54.1
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 8.9e-34 147.5 175 53.1
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 8.9e-34 147.5 196 48.0
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 3.4e-33 145.6 175 52.0
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 5.8e-33 144.8 179 51.4
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 5.8e-33 144.8 179 51.4
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 9.9e-33 144.1 197 48.2
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 9.9e-33 144.1 201 50.7
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 2.9e-32 142.5 218 45.9
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 2.9e-32 142.5 206 44.2
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 2.9e-32 142.5 204 49.5
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 3.8e-32 142.1 183 50.3
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 6.4e-32 141.4 206 48.1
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 8.4e-32 141.0 206 44.2
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 8.4e-32 141.0 191 49.7
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 8.4e-32 141.0 202 48.0
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 1.1e-31 140.6 184 51.6
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 1.1e-31 140.6 177 50.3
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 1.1e-31 140.6 206 43.7
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.4e-31 140.2 181 50.8
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 3.2e-31 139.0 181 50.8
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 3.2e-31 139.0 185 51.4
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 5.4e-31 138.3 210 48.6
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 5.4e-31 138.3 194 47.9
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 7.1e-31 137.9 214 45.8
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 9.3e-31 137.5 210 46.7
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 1.6e-30 136.7 183 49.2
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 2.1e-30 136.3 183 49.2
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 3.5e-30 135.6 213 46.9
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 3.5e-30 135.6 210 45.2
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 3.5e-30 135.6 196 45.4
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 4.6e-30 135.2 186 48.4
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 4.6e-30 135.2 210 44.8
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 6.0e-30 134.8 192 46.4
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 1.0e-29 134.0 198 47.0
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 1.3e-29 133.7 184 46.2
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 1.3e-29 133.7 206 43.2
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 1.3e-29 133.7 192 46.9
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.3e-29 133.7 179 50.8
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.3e-29 133.7 179 50.8
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 3.9e-29 132.1 179 50.3
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 3.9e-29 132.1 184 50.5
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 5.1e-29 131.7 207 43.0
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 5.1e-29 131.7 184 46.7
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 5.1e-29 131.7 184 48.4
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 5.1e-29 131.7 184 48.4
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 5.1e-29 131.7 184 48.4
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 6.6e-29 131.3 184 46.2
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 1.1e-28 130.6 214 44.4
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 1.1e-28 130.6 185 47.0
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 1.1e-28 130.6 172 50.6
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 1.1e-28 130.6 209 45.0
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 1.1e-28 130.6 201 46.3
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 1.5e-28 130.2 186 44.6
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 1.9e-28 129.8 217 47.0
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 5.6e-28 128.3 208 41.3
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 5.6e-28 128.3 179 48.6
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 5.6e-28 128.3 175 48.0
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 7.3e-28 127.9 185 49.2
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 9.6e-28 127.5 212 42.9
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 1.6e-27 126.7 187 46.0
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 1.6e-27 126.7 190 46.3
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 2.8e-27 125.9 167 49.1
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 2.8e-27 125.9 187 45.5
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 6.2e-27 124.8 185 46.5
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 1.1e-26 124.0 209 44.0
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 1.8e-26 123.2 208 43.8
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 2.4e-26 122.9 163 49.1
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 4.0e-26 122.1 162 48.1
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 5.3e-26 121.7 208 43.3
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 6.9e-26 121.3 198 41.9
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 2.0e-25 119.8 198 43.4
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 2.0e-25 119.8 225 38.7
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 2.6e-25 119.4 154 54.5
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 3.4e-25 119.0 204 43.1
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 5.8e-25 118.2 191 46.1
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 7.6e-25 117.9 184 43.5
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 2.9e-24 115.9 162 46.9
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 2.9e-24 115.9 162 46.9
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 3.8e-24 115.5 186 45.7
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 6.4e-24 114.8 203 41.9
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 1.1e-23 114.0 210 40.0
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 1.1e-23 114.0 211 43.6
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 1.4e-23 113.6 158 48.1
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 1.9e-23 113.2 162 46.3
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 2.4e-23 112.8 175 44.6
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 2.4e-23 112.8 182 45.6
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 2.4e-23 112.8 208 40.9
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 3.2e-23 112.5 215 39.5
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 5.4e-23 111.7 217 38.7
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 2.7e-22 109.4 170 46.5
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 3.5e-22 109.0 179 42.5
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 4.6e-22 108.6 202 40.6
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 6.0e-22 108.2 183 42.6
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 6.0e-22 108.2 200 41.0
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 7.9e-22 107.8 180 39.4
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 1.8e-21 106.7 236 36.0
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 3.0e-21 105.9 186 40.3
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 3.9e-21 105.5 210 40.5
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 5.1e-21 105.1 185 42.2
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 1.1e-20 104.0 204 38.2
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 1.1e-20 104.0 228 36.8
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 1.5e-20 103.6 106 56.6
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 2.5e-20 102.8 159 47.2
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 9.6e-20 100.9 176 38.6
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 9.6e-20 100.9 210 38.1
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 1.3e-19 100.5 182 40.1
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 1.3e-19 100.5 182 40.1
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 1.3e-19 100.5 182 40.1
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 1.6e-19 100.1 190 38.9
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 6.2e-19 98.2 181 40.3
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 8.1e-19 97.8 169 39.6
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 8.1e-19 97.8 169 39.6
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 8.1e-19 97.8 243 33.3
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 1.4e-18 97.1 165 40.6
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 1.4e-18 97.1 165 40.6
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 2.4e-18 96.3 185 38.4
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 6.9e-18 94.7 180 38.9
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 6.9e-18 94.7 172 41.9
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 1.2e-17 94.0 186 38.2
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 2.0e-17 93.2 177 41.2
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 2.6e-17 92.8 184 40.8
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 5.8e-17 91.7 192 32.8
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 9.9e-17 90.9 169 37.9
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 2.9e-16 89.4 92 53.3
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 4.2e-15 85.5 205 36.6
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 4.2e-15 85.5 202 35.1
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 4.2e-15 85.5 151 41.1
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 5.5e-15 85.1 70 64.3
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 4.6e-14 82.0 122 45.9
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 5.1e-13 78.6 113 47.8
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 6.7e-13 78.2 187 35.8
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 4.3e-12 75.5 173 34.7
SEGI_35194 Sequoiadendron giganteum HOM05D004039 ORTHO05D004573 7.4e-12 74.7 168 37.5
Os08g0539200 Oryza sativa ssp. japonica HOM05D015480 ORTHO05D019326 5.3e-10 68.6 155 31.6
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 5.3e-10 68.6 225 30.7
THA.LOC104823341 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 6.9e-10 68.2 158 38.6
Os09g0511300 Oryza sativa ssp. japonica HOM05D015480 ORTHO05D019326 9.0e-10 67.8 169 30.8
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.5e-09 67.0 163 36.8
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 1.5e-09 67.0 193 32.1
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 4.5e-09 65.5 171 35.7
Os09g0511200 Oryza sativa ssp. japonica HOM05D015480 ORTHO05D019326 1.7e-08 63.5 181 29.3
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 3.8e-08 62.4 168 35.1
Zm00001eb318100 Zea mays HOM05D015480 ORTHO05D019326 3.8e-08 62.4 179 30.7
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 6.5e-08 61.6 152 36.8
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 7.1e-07 58.2 160 35.6
Ah.02g128730 Amaranthus hybridus HOM05D029470 ORTHO05D026515 2.7e-06 56.2 190 32.1
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 6.0e-06 55.1 153 31.4
Zm00001eb359900 Zea mays HOM05D015480 ORTHO05D019326 6.0e-06 55.1 174 28.2


User provided reference genes

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