Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.9e-133 479.2 246 100.0
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 5.6e-133 477.6 246 99.6
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 5.7e-109 397.9 245 83.7
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 3.6e-103 378.6 248 78.2
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 3.6e-103 378.6 248 78.2
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 1.4e-102 376.7 248 78.2
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 3.9e-102 375.2 231 84.8
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 2.0e-101 372.9 246 78.5
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 3.3e-101 372.1 248 77.8
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 1.3e-100 370.2 247 77.3
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 2.2e-100 369.4 251 77.3
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 3.7e-100 368.6 248 78.2
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 4.8e-100 368.2 249 78.3
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 6.3e-100 367.9 248 77.0
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 8.2e-100 367.5 248 77.8
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 2.4e-99 365.9 249 75.9
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 2.4e-99 365.9 248 77.4
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 3.1e-99 365.5 248 76.6
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.2e-98 363.6 249 75.5
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 1.5e-98 363.2 248 77.4
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 3.4e-98 362.1 246 76.4
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 4.5e-98 361.7 248 75.8
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 7.7e-98 360.9 249 75.1
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 2.2e-97 359.4 246 75.6
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 3.8e-97 358.6 247 76.9
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 5.0e-97 358.2 245 75.1
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 5.0e-97 358.2 246 76.8
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 6.5e-97 357.8 249 74.7
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 8.5e-97 357.5 249 77.5
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 8.5e-97 357.5 249 77.5
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 8.5e-97 357.5 248 76.2
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 3.2e-96 355.5 265 71.3
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 3.2e-96 355.5 251 76.1
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 5.5e-96 354.8 253 73.5
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 1.2e-95 353.6 246 75.2
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 2.1e-95 352.8 246 75.2
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 2.7e-95 352.4 246 74.4
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 3.6e-95 352.1 250 74.0
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 1.0e-94 350.5 246 73.6
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 3.0e-94 349.0 253 73.5
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 3.9e-94 348.6 246 74.4
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 5.1e-94 348.2 246 74.4
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 8.8e-94 347.4 247 74.1
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 1.5e-93 346.7 246 75.2
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 1.5e-93 346.7 251 72.5
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 2.6e-93 345.9 264 72.3
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 2.6e-93 345.9 247 72.9
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 2.6e-93 345.9 247 73.3
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 3.3e-93 345.5 248 74.2
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 2.2e-92 342.8 249 73.5
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 3.7e-92 342.0 248 73.0
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 3.7e-92 342.0 247 71.7
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 6.3e-92 341.3 247 72.5
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 6.3e-92 341.3 247 71.7
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 8.2e-92 340.9 247 72.5
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 8.2e-92 340.9 249 73.1
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.1e-91 340.5 247 72.5
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.1e-91 340.5 247 72.5
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.1e-91 340.5 247 72.5
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 2.4e-91 339.3 252 72.2
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 4.1e-91 338.6 247 72.5
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 5.3e-91 338.2 255 69.4
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 7.0e-91 337.8 248 72.6
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.2e-90 337.0 247 70.9
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 4.5e-90 335.1 250 72.8
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 5.9e-90 334.7 246 71.1
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 1.7e-89 333.2 248 71.8
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 8.5e-89 330.9 247 71.3
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 1.9e-88 329.7 257 69.6
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 2.5e-88 329.3 257 72.4
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 3.2e-88 328.9 257 70.8
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 4.2e-88 328.6 248 71.4
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 4.2e-88 328.6 247 70.4
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 5.5e-88 328.2 247 68.8
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 5.5e-88 328.2 257 71.2
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 9.4e-88 327.4 246 67.9
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 1.6e-87 326.6 245 70.2
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 2.1e-87 326.2 243 67.5
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 3.6e-87 325.5 243 67.5
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 6.1e-87 324.7 253 70.8
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 8.0e-87 324.3 247 68.4
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.0e-86 323.9 236 72.0
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 1.0e-86 323.9 244 67.2
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 1.0e-86 323.9 251 66.9
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 1.0e-86 323.9 247 68.8
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 1.8e-86 323.2 243 67.1
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 1.8e-86 323.2 246 67.5
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 2.3e-86 322.8 246 67.1
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 2.3e-86 322.8 241 69.7
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 4.0e-86 322.0 245 68.6
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 5.2e-86 321.6 244 68.0
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 6.7e-86 321.2 244 68.0
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 8.8e-86 320.9 236 71.6
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 1.5e-85 320.1 247 68.8
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 2.0e-85 319.7 243 67.1
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 3.3e-85 318.9 237 73.4
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 7.5e-85 317.8 246 67.1
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 7.5e-85 317.8 247 67.6
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 9.7e-85 317.4 244 68.0
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 9.7e-85 317.4 219 73.1
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 1.7e-84 316.6 249 66.3
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 1.7e-84 316.6 244 66.8
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 2.2e-84 316.2 249 66.3
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 2.2e-84 316.2 243 71.2
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 4.8e-84 315.1 313 57.8
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 6.3e-84 314.7 236 71.2
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 1.8e-83 313.2 256 67.2
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 9.1e-83 310.8 243 65.8
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 1.6e-82 310.1 245 65.7
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 2.7e-82 309.3 243 65.4
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 5.9e-82 308.1 252 67.5
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 7.7e-82 307.8 250 68.4
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 1.3e-81 307.0 251 64.5
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 5.0e-81 305.1 245 66.1
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 5.0e-81 305.1 245 66.1
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 5.0e-81 305.1 245 66.1
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 1.5e-80 303.5 241 68.9
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 4.2e-80 302.0 245 65.7
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 1.2e-79 300.4 250 65.2
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 2.7e-79 299.3 244 67.2
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 2.7e-79 299.3 244 66.8
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 2.7e-79 299.3 236 69.5
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 3.6e-79 298.9 321 53.9
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 6.1e-79 298.1 238 68.1
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 5.2e-78 295.0 232 67.7
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 8.8e-78 294.3 249 63.5
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 8.8e-78 294.3 215 70.2
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 1.3e-76 290.4 229 67.7
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 5.4e-75 285.0 214 69.2
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 5.4e-75 285.0 200 72.0
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 9.1e-75 284.3 237 65.0
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 4.5e-74 282.0 250 64.0
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 7.7e-74 281.2 257 60.3
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 2.9e-73 279.3 244 61.5
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 4.0e-70 268.9 387 46.5
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 1.4e-67 260.4 247 59.9
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.8e-67 260.0 233 60.9
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 1.1e-64 250.8 247 56.7
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 5.2e-62 241.9 146 80.1
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 8.9e-62 241.1 252 54.8
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 1.1e-59 234.2 150 76.7
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 1.8e-59 233.4 247 54.7
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 3.0e-57 226.1 136 81.6
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.9e-56 223.4 214 57.9
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 3.3e-56 222.6 169 67.5
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.4e-54 217.2 169 66.3
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 3.2e-51 206.1 270 48.1
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 3.6e-47 192.6 288 44.1
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.8e-46 190.3 193 56.5
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 5.2e-46 188.7 121 76.0
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 2.2e-44 183.3 117 78.6
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 4.6e-34 149.1 127 64.6
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 1.1e-32 144.4 265 38.5
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 3.3e-32 142.9 272 37.9
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 7.3e-32 141.7 130 63.8
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 5.2e-30 135.6 93 76.3
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 3.2e-27 126.3 91 69.2
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 3.3e-24 116.3 91 59.3
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 2.6e-21 106.7 69 72.5
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 9.9e-21 104.8 97 58.8
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 4.2e-19 99.4 75 70.7
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 9.3e-19 98.2 121 56.2
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 7.9e-18 95.1 75 68.0
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 8.7e-17 91.7 110 36.4
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 2.1e-15 87.0 90 43.3
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 5.8e-13 79.0 134 44.8
ECA247G1153 Erigeron canadensis HOM05D004155 ORTHO05D004837 9.9e-13 78.2 90 55.6
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 3.8e-12 76.3 81 51.9
PGSC0003DMG400045666 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.4e-11 74.3 78 52.6
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 7.9e-10 68.6 140 34.3


User provided reference genes

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