Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G0310 Trochodendron aralioides HOM05D004417 ORTHO05D005528 0.0e+00 3171.7 1631 100.0
Dinv26250 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2579.7 1606 81.2
Nn4g24297 Nelumbo nucifera HOM05D004417 ORTHO05D005528 0.0e+00 2563.9 1608 80.5
PSO478G2641 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2549.2 1616 79.4
PSO017G2325 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2535.0 1617 78.8
Prupe.1G331400 Prunus persica HOM05D004417 ORTHO05D005528 0.0e+00 2531.5 1613 79.2
Manes.17G082000 Manihot esculenta HOM05D004417 ORTHO05D005528 0.0e+00 2529.6 1612 79.2
Ciclev10014030m.g Citrus clementina HOM05D004417 ORTHO05D005528 0.0e+00 2512.6 1619 79.1
Thecc.02G290300 Theobroma cacao HOM05D004417 ORTHO05D005528 0.0e+00 2508.8 1612 79.0
Actinidia25877 Actinidia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2498.4 1601 79.4
MD13G1030100 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2496.1 1613 78.2
MD16G1020900 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2495.3 1612 78.5
Atru.chr11.518 Acer truncatum HOM05D004417 ORTHO05D005528 0.0e+00 2483.8 1616 78.7
Gorai.005G158900 Gossypium raimondii HOM05D004417 ORTHO05D005528 0.0e+00 2478.4 1613 77.9
CSS0030927 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2476.4 1617 78.2
Potri.008G133300 Populus trichocarpa HOM05D004417 ORTHO05D005528 0.0e+00 2474.9 1615 77.9
CANSAT01G0135 Cannabis sativa HOM05D004417 ORTHO05D005528 0.0e+00 2474.1 1609 77.8
TWI74G0839 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 0.0e+00 2473.4 1611 78.0
Aqoxy3G00033 Aquilegia oxysepala HOM05D004417 ORTHO05D005528 0.0e+00 2472.2 1617 77.6
RcHm_v2.0_Chr4g0443371 Rosa chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2465.3 1612 77.6
CSS0010110 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2455.6 1606 77.9
FvH4_4g33860 Fragaria vesca HOM05D004417 ORTHO05D005528 0.0e+00 2449.9 1611 77.0
Glyma.09G123500 Glycine max HOM05D004417 ORTHO05D005528 0.0e+00 2439.5 1615 76.8
FAN12G0749 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2438.7 1624 76.4
FAN17G2093 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2436.0 1620 76.2
Lj2g0013863 Lotus japonicus HOM05D004417 ORTHO05D005528 0.0e+00 2425.2 1620 76.4
Eucgr.B02952 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2415.6 1607 76.5
Dinv18635 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2415.2 1508 80.8
Phvul.003G021100 Phaseolus vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2409.4 1618 76.0
CsaV3_5G028240 Cucumis sativus L. HOM05D004417 ORTHO05D005528 0.0e+00 2404.8 1614 75.2
Lalb_Chr13g0290691 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2404.4 1593 76.6
QL03p034852 Quercus lobata HOM05D004417 ORTHO05D005528 0.0e+00 2404.0 1516 80.3
Medtr1g031910 Medicago truncatula HOM05D004417 ORTHO05D005528 0.0e+00 2393.6 1615 75.0
Sed0000894 Sechium edule HOM05D004417 ORTHO05D005528 0.0e+00 2393.6 1618 74.7
Psat6g045000 Pisum sativum HOM05D004417 ORTHO05D005528 0.0e+00 2386.7 1615 75.4
Lj3A865G68 Lonicera japonica HOM05D004417 ORTHO05D005528 0.0e+00 2384.8 1636 75.1
Ca_12568_v3 Cicer arietinum L. HOM05D004417 ORTHO05D005528 0.0e+00 2380.9 1615 75.9
TPR.G36876 Trifolium pratense HOM05D004417 ORTHO05D005528 0.0e+00 2376.7 1636 74.2
Sopen05g013790 Solanum pennellii HOM05D004417 ORTHO05D005528 0.0e+00 2344.7 1613 74.5
MELO3C005286.2 Cucumis melo HOM05D004417 ORTHO05D005528 0.0e+00 2343.5 1640 73.1
Cc11_g08040 Coffea canephora HOM05D004417 ORTHO05D005528 0.0e+00 2339.7 1605 73.3
ClCG01G006440 Citrullus lanatus HOM05D004417 ORTHO05D005528 0.0e+00 2330.1 1626 73.2
GSVIVG01011680001 Vitis vinifera HOM05D004417 ORTHO05D005528 0.0e+00 2317.7 1652 73.4
EL10Ac6g14152 Beta vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2315.0 1606 74.1
SalBow8G1470 Salvia bowleyana HOM05D004417 ORTHO05D005528 0.0e+00 2314.3 1658 71.5
PGR042G2175 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2296.2 1611 73.9
MSTRG.7613 Avicennia marina HOM05D004417 ORTHO05D005528 0.0e+00 2295.4 1590 73.8
HanXRQChr17g0567351 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 2295.4 1619 72.3
ECA246G0702 Erigeron canadensis HOM05D004417 ORTHO05D005528 0.0e+00 2293.1 1604 72.1
Sabra08G0101900 Salix brachista HOM05D004417 ORTHO05D005528 0.0e+00 2293.1 1925 64.3
PGR042G0049 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2286.9 1611 73.3
Lsat_1_v5_gn_3_55840 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 2280.4 1622 71.4
THA.LOC104822992 Tarenaya hassleriana HOM05D004417 ORTHO05D005528 0.0e+00 2268.0 1625 72.9
Zm00001eb253700 Zea mays HOM05D004417 ORTHO05D005528 0.0e+00 2266.9 1609 72.4
Gohir.D02G141800 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 2266.1 1428 79.4
Ah.03g137400 Amaranthus hybridus HOM05D004417 ORTHO05D005528 0.0e+00 2264.6 1605 72.0
Os02g0732700 Oryza sativa ssp. japonica HOM05D004417 ORTHO05D005528 0.0e+00 2264.6 1598 73.0
AUR62038465 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 2257.6 1619 72.4
Lalb_Chr16g0387721 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2252.6 1587 71.9
Eucgr.B02949 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2251.9 1598 72.7
Carub.0001s2282 Capsella rubella HOM05D004417 ORTHO05D005528 0.0e+00 2241.8 1625 71.0
Aa31LG7G7270 Aethionema arabicum HOM05D004417 ORTHO05D005528 0.0e+00 2236.8 1621 71.4
AL1G37020 Arabidopsis lyrata HOM05D004417 ORTHO05D005528 0.0e+00 2235.7 1620 71.0
Sp1g20700 Schrenkiella parvula HOM05D004417 ORTHO05D005528 0.0e+00 2235.7 1619 70.7
ATR0753G138 Amborella trichopoda HOM05D004417 ORTHO05D005528 0.0e+00 2228.0 1592 72.8
AT1G23230 Arabidopsis thaliana HOM05D004417 ORTHO05D005528 0.0e+00 2226.8 1610 70.8
CARHR023690 Cardamine hirsuta HOM05D004417 ORTHO05D005528 0.0e+00 2219.9 1616 70.4
Sc14g0006960 Simmondsia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2219.1 1507 74.5
Migut.L00554 Erythranthe guttata HOM05D004417 ORTHO05D005528 0.0e+00 2217.6 1592 72.7
Thhalv10006548m.g Eutrema salsugineum HOM05D004417 ORTHO05D005528 0.0e+00 2202.9 1623 70.2
FAN07G1109 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2191.0 1417 77.2
BcaB07g32314 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2184.1 1603 69.8
BcaB03g14154 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2180.6 1609 69.9
CDE07G0372 Ceratophyllum demersum HOM05D004417 ORTHO05D005528 0.0e+00 2169.4 1606 69.3
BcaC06g35029 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2155.9 1614 69.0
BraA07t29150Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2148.2 1616 68.9
A07p13940 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2145.9 1616 68.8
BolC5t30944H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2139.4 1613 68.4
COL.COLO4_13080 Corchorus olitorius HOM05D004417 ORTHO05D005528 0.0e+00 2139.0 1409 77.6
A09p41530 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2136.7 1610 68.0
BraA09t39644Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2133.6 1614 67.7
CiPaw.05G190700 Carya illinoinensis HOM05D004417 ORTHO05D005528 0.0e+00 2130.1 1383 78.3
arahy.Tifrunner.gnm1.ann1.GYT9TN Arachis hypogaea HOM05D004417 ORTHO05D005528 0.0e+00 2129.4 1956 58.9
Oeu018613.1 Olea europaea HOM05D004417 ORTHO05D005528 0.0e+00 2129.0 1553 70.6
C05p22460 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2128.2 1616 68.0
BolC7t42575H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2115.9 1612 68.4
C07p20490 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2112.8 1612 68.2
Hund24934 Selenicereus undatus HOM05D004417 ORTHO05D005528 0.0e+00 2045.8 1486 71.1
SGA_v2.0_scaffold50G18460 Striga asiatica HOM05D004417 ORTHO05D005528 0.0e+00 2006.1 1631 65.2
BcaC05g26233 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 1961.0 1614 64.0
Duzib251G0182 Durio zibethinus HOM05D004417 ORTHO05D005528 0.0e+00 1959.9 1199 81.9
HanXRQChr17g0566691 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 1889.8 1612 61.9
Lsat_1_v5_gn_4_12821 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 1871.3 1604 61.3
DCAR_007321 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1748.8 1569 61.5
vmacro00393 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 0.0e+00 1725.7 1219 73.0
AUR62014157 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 1687.5 1102 77.8
Peaxi162Scf00376g00032 Petunia axillaris HOM05D004417 ORTHO05D005528 0.0e+00 1649.0 1416 62.9
Rhsim09G0063500 Rhododendron simsii HOM05D004417 ORTHO05D005528 0.0e+00 1567.0 1374 62.2
Nitab4.5_0000018g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 0.0e+00 1532.7 979 78.1
Mapoly0005s0093 Marchantia polymorpha HOM05D004417 ORTHO05D005528 0.0e+00 1525.8 1628 51.5
SEGI_05575 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 0.0e+00 1497.6 1206 64.5
Solyc05g016440.3 Solanum lycopersicum HOM05D004417 ORTHO05D005528 0.0e+00 1495.7 969 77.5
Pp3c27_2940 Physcomitrium patens HOM05D004417 ORTHO05D005528 0.0e+00 1462.2 1625 50.3
SMO364G0727 Selaginella moellendorffii HOM05D004417 ORTHO05D005528 0.0e+00 1400.2 1597 48.1
DCAR_030256 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1256.9 1081 60.9
Gohir.A03G118100 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 1194.1 732 82.0
unitig_899.g15633 Utricularia gibba HOM05D004417 ORTHO05D005528 0.0e+00 1149.4 1592 45.3
Gohir.A03G118200 Gossypium hirsutum HOM05D004417 ORTHO05D005528 2.5e-285 986.5 628 77.4
arahy.Tifrunner.gnm1.ann1.W0X7A3 Arachis hypogaea HOM05D004417 ORTHO05D005528 1.0e-251 874.8 605 75.2
Solyc05g016460.2 Solanum lycopersicum HOM05D004417 ORTHO05D005528 6.4e-249 865.5 639 70.1
Cpa.g.sc2.220 Carica papaya HOM05D004417 ORTHO05D005528 3.1e-243 846.7 584 73.3
VMungo1215G0458 Vigna mungo HOM05D004417 ORTHO05D005528 3.5e-239 833.2 534 79.8
Nitab4.5_0008542g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 6.6e-230 802.4 603 68.2
Nitab4.5_0000018g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.1e-229 801.6 592 68.9
SHI04465 Sapria himalayana HOM05D004417 ORTHO05D005528 6.2e-228 795.8 660 63.6
Nitab4.5_0008542g0030 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.3e-220 771.5 500 78.0
BcaB07g32312 Brassica carinata HOM05D004417 ORTHO05D005528 1.8e-211 741.1 522 74.3
vmacro00394 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 5.3e-195 686.4 559 66.2
SHI04470 Sapria himalayana HOM05D004417 ORTHO05D005528 1.2e-186 658.7 642 55.1
VMungo1215G3220 Vigna mungo HOM05D004417 ORTHO05D005528 1.1e-184 652.1 510 67.6
Rhsim09G0063700 Rhododendron simsii HOM05D004417 ORTHO05D005528 2.5e-181 641.0 513 64.3
Haze_10919 Corylus avellana HOM05D004417 ORTHO05D005528 1.1e-176 625.5 412 78.9
Actinidia25661 Actinidia chinensis HOM05D004417 ORTHO05D005528 1.8e-174 618.2 553 61.5
HPP92_024821 Vanilla planifolia HOM05D004417 ORTHO05D005528 2.6e-173 614.4 483 64.4
arahy.Tifrunner.gnm1.ann1.LF64TX Arachis hypogaea HOM05D004417 ORTHO05D005528 4.5e-170 603.6 477 65.8
Haze_10916 Corylus avellana HOM05D004417 ORTHO05D005528 1.3e-153 548.9 360 79.7
VMungo1215G0989 Vigna mungo HOM05D004417 ORTHO05D005528 8.5e-153 546.2 338 80.5
Cpa.g.sc2.214 Carica papaya HOM05D004417 ORTHO05D005528 9.4e-152 542.7 325 86.2
SEGI_38026 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 1.2e-125 456.1 398 60.1
SEGI_15839 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 3.4e-125 454.5 371 63.6
Actinidia25662 Actinidia chinensis HOM05D004417 ORTHO05D005528 1.9e-123 448.7 292 81.8
Nitab4.5_0008542g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.6e-119 435.6 324 68.8
CAN.G45.11 Capsicum annuum HOM05D004417 ORTHO05D005528 1.7e-113 415.6 318 66.7
Nitab4.5_0005025g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.5e-112 412.5 316 67.1
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 1.8e-110 405.6 395 55.9
VMungo1215G1550 Vigna mungo HOM05D004417 ORTHO05D005528 6.6e-105 387.1 248 75.0
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 8.4e-92 343.6 247 68.8
Psat2g053360 Pisum sativum HOM05D004417 ORTHO05D005528 1.6e-79 302.8 212 72.6
CiPaw.05G190600 Carya illinoinensis HOM05D004417 ORTHO05D005528 1.7e-68 266.2 161 84.5
Peaxi162Scf00376g00324 Petunia axillaris HOM05D004417 ORTHO05D005528 5.5e-67 261.2 162 79.6
PSO083G0001 Papaver somniferum HOM05D004417 ORTHO05D005528 9.4e-67 260.4 142 84.5
SEGI_21450 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 6.1e-58 231.1 212 59.9
Potri.010G108350 Populus trichocarpa HOM05D004417 ORTHO05D005528 2.3e-57 229.2 142 83.1
SHI04469 Sapria himalayana HOM05D004417 ORTHO05D005528 1.3e-52 213.4 146 71.2
Gorai.010G022100 Gossypium raimondii HOM05D004417 ORTHO05D003549 1.0e-44 187.2 134 70.1
Cpa.g.sc2.218 Carica papaya HOM05D004417 ORTHO05D005528 4.2e-43 181.8 119 75.6
Haze_10915 Corylus avellana HOM05D004417 ORTHO05D005528 2.4e-38 166.0 102 80.4
Nitab4.5_0008542g0040 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.0e-37 162.9 142 61.3
QL03p034878 Quercus lobata HOM05D004417 ORTHO05D005528 1.1e-35 157.1 93 81.7
Gohir.A02G156900 Gossypium hirsutum HOM05D003153 ORTHO05D003549 9.4e-35 154.1 143 57.3
Gohir.A03G114800 Gossypium hirsutum HOM05D003153 ORTHO05D003549 9.4e-35 154.1 143 57.3
Gohir.D01G098050 Gossypium hirsutum HOM05D003153 ORTHO05D003549 9.4e-35 154.1 143 57.3
Gohir.D10G083766 Gossypium hirsutum HOM05D003153 ORTHO05D003549 9.4e-35 154.1 143 57.3
Gohir.D10G134850 Gossypium hirsutum HOM05D003153 ORTHO05D003549 9.4e-35 154.1 143 57.3
Gohir.D13G141401 Gossypium hirsutum HOM05D003153 ORTHO05D003549 9.4e-35 154.1 143 57.3
Hund24935 Selenicereus undatus HOM05D008000 ORTHO05D010275 2.7e-34 152.5 102 74.5
Gohir.D10G083700 Gossypium hirsutum HOM05D003153 ORTHO05D003549 8.0e-34 151.0 143 56.6
Gorai.011G113600 Gossypium raimondii HOM05D003153 ORTHO05D003549 1.8e-33 149.8 143 55.9
CAN.G45.12 Capsicum annuum HOM05D004417 ORTHO05D005528 6.8e-33 147.9 107 67.3
Duzib084G1091 Durio zibethinus HOM05D004417 ORTHO05D005528 1.2e-29 137.1 84 75.0
Gohir.A13G139960 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.5e-27 129.4 135 52.6
Gohir.1Z049383 Gossypium hirsutum HOM05D003153 ORTHO05D003549 4.3e-27 128.6 135 52.6
HPP92_024820 Vanilla planifolia HOM05D004417 ORTHO05D005528 7.3e-27 127.9 108 65.7
Gorai.002G174000 Gossypium raimondii HOM05D004417 ORTHO05D000624 1.5e-24 120.2 89 66.3
Gohir.D01G141400 Gossypium hirsutum HOM05D004417 ORTHO05D000624 2.6e-24 119.4 89 65.2
Sopen03g014530 Solanum pennellii HOM05D004417 ORTHO05D005528 4.4e-24 118.6 101 63.4
HPP92_024819 Vanilla planifolia HOM05D004417 ORTHO05D005528 7.3e-19 101.3 82 64.6
Psat1g176600 Pisum sativum HOM05D002927 ORTHO05D015040 1.8e-17 96.7 55 85.5
Haze_10917 Corylus avellana HOM05D004417 ORTHO05D005528 5.2e-17 95.1 51 76.5
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 2.9e-15 89.4 59 71.2
TWI77G0048 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 6.6e-12 78.2 50 72.0
Migut.L00545 Erythranthe guttata HOM05D004417 ORTHO05D005528 1.2e-10 73.9 51 66.7
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 2.8e-10 72.8 58 65.5
Psat0s3527g0040 Pisum sativum HOM05D005005 ORTHO05D006178 4.0e-09 68.9 38 71.1
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 1.2e-08 67.4 54 66.7
Psat7g192520 Pisum sativum HOM05D002736 ORTHO05D018191 9.8e-08 64.3 48 66.7


User provided reference genes

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