Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G0299 Trochodendron aralioides HOM05D005662 ORTHO05D007004 1.6e-132 476.1 233 100.0
TAR375G0912 Trochodendron aralioides HOM05D005662 ORTHO05D007004 1.3e-107 393.3 222 86.9
Dinv22971 Davidia involucrata HOM05D005662 ORTHO05D007004 1.6e-97 359.8 233 74.7
MBI12_g31644_MAGBIO Magnolia biondii HOM05D005662 ORTHO05D007004 1.6e-97 359.8 233 76.0
Nn4g26371 Nelumbo nucifera HOM05D005662 ORTHO05D007004 2.1e-97 359.4 233 77.3
Prupe.2G281200 Prunus persica HOM05D005662 ORTHO05D007004 5.4e-93 344.7 235 75.3
Dinv28543 Davidia involucrata HOM05D005662 ORTHO05D007004 7.0e-93 344.4 235 72.8
Manes.06G137000 Manihot esculenta HOM05D005662 ORTHO05D007004 1.1e-90 337.0 235 71.9
MD07G1257000 Malus domestica HOM05D005662 ORTHO05D007004 3.3e-90 335.5 235 74.5
GSVIVG01018540001 Vitis vinifera HOM05D005662 ORTHO05D007004 3.3e-90 335.5 232 71.6
QL09p018886 Quercus lobata HOM05D005662 ORTHO05D007004 1.2e-89 333.6 233 72.5
Gorai.001G237900 Gossypium raimondii HOM05D005662 ORTHO05D007004 3.6e-89 332.0 235 68.9
Gohir.D07G210500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 1.1e-88 330.5 235 68.5
TWI39G1176 Tripterygium wilfordii HOM05D005662 ORTHO05D007004 1.1e-88 330.5 229 72.1
CiPaw.03G096300 Carya illinoinensis HOM05D005662 ORTHO05D007004 2.3e-88 329.3 236 71.2
Gohir.A07G204500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 2.3e-88 329.3 235 68.9
Eucgr.K00149 Eucalyptus grandis HOM05D005662 ORTHO05D007004 3.1e-88 328.9 237 70.5
Thecc.03G160400 Theobroma cacao HOM05D005662 ORTHO05D007004 4.0e-88 328.6 232 71.1
Potri.015G129900 Populus trichocarpa HOM05D005662 ORTHO05D007004 5.2e-88 328.2 236 70.8
Ciclev10005797m.g Citrus clementina HOM05D005662 ORTHO05D007004 2.6e-87 325.9 234 67.1
Hma1.2p1_0654F.1_g196460 Hydrangea macrophylla HOM05D005662 ORTHO05D007004 4.4e-87 325.1 234 69.2
Actinidia25029 Actinidia chinensis HOM05D005662 ORTHO05D007004 7.5e-87 324.3 228 69.3
Duzib205G1232 Durio zibethinus HOM05D005662 ORTHO05D007004 9.8e-87 323.9 243 68.7
Aqoxy7G00656 Aquilegia oxysepala HOM05D005662 ORTHO05D007004 1.7e-86 323.2 246 65.4
MD01G1184800 Malus domestica HOM05D005662 ORTHO05D007004 2.9e-86 322.4 235 69.8
CSS0015308 Camellia sinensis var. sinensis HOM05D005662 ORTHO05D007004 3.7e-86 322.0 234 68.8
Potri.012G128500 Populus trichocarpa HOM05D005662 ORTHO05D007004 3.7e-86 322.0 234 69.2
COL.COLO4_14166 Corchorus olitorius HOM05D005662 ORTHO05D007004 1.4e-85 320.1 226 69.5
CANSAT56G2670 Cannabis sativa HOM05D005662 ORTHO05D007004 1.9e-85 319.7 234 68.4
Atru.chr1.651 Acer truncatum HOM05D005662 ORTHO05D007004 7.1e-85 317.8 234 66.7
PGR142G0586 Punica granatum HOM05D005662 ORTHO05D007004 7.1e-85 317.8 235 69.4
vmacro06774 Vaccinium macrocarpon HOM05D005662 ORTHO05D007004 6.0e-84 314.7 233 66.5
Cc02_g04010 Coffea canephora HOM05D005662 ORTHO05D007004 7.8e-84 314.3 234 69.2
Lsat_1_v5_gn_8_9401 Lactuca sativa HOM05D005662 ORTHO05D007004 1.3e-83 313.5 233 68.7
Sopen03g023350 Solanum pennellii HOM05D005662 ORTHO05D007004 1.7e-83 313.2 230 64.3
Nitab4.5_0000072g0480 Nicotiana tabacum HOM05D005662 ORTHO05D007004 2.3e-83 312.8 232 65.9
MSTRG.8809 Avicennia marina HOM05D005662 ORTHO05D007004 3.0e-83 312.4 234 66.2
RcHm_v2.0_Chr1g0374961 Rosa chinensis HOM05D005662 ORTHO05D007004 1.1e-82 310.5 230 72.2
Solyc03g083540.3 Solanum lycopersicum HOM05D005662 ORTHO05D007004 1.1e-82 310.5 230 64.8
Peaxi162Scf01372g00048 Petunia axillaris HOM05D005662 ORTHO05D007004 1.9e-82 309.7 229 65.5
THA.LOC104821401 Tarenaya hassleriana HOM05D005662 ORTHO05D007004 1.6e-81 306.6 230 67.4
Nitab4.5_0000481g0050 Nicotiana tabacum HOM05D005662 ORTHO05D007004 3.6e-81 305.4 232 65.9
Thhalv10004861m.g Eutrema salsugineum HOM05D005662 ORTHO05D007004 1.1e-80 303.9 236 64.8
FvH4_7g28050 Fragaria vesca HOM05D005662 ORTHO05D007004 1.1e-80 303.9 236 69.5
Actinidia13561 Actinidia chinensis HOM05D005662 ORTHO05D007004 1.8e-80 303.1 226 66.8
CDE02G0217 Ceratophyllum demersum HOM05D005662 ORTHO05D007004 5.2e-80 301.6 237 66.7
Sabra12G0096500 Salix brachista HOM05D005662 ORTHO05D007004 5.2e-80 301.6 211 70.1
PGSC0003DMG400023012 Solanum tuberosum HOM05D005662 ORTHO05D007004 8.9e-80 300.8 230 63.5
HanXRQChr08g0223561 Helianthus annuus HOM05D005662 ORTHO05D007004 1.3e-78 297.0 232 66.8
Oeu039209.1 Olea europaea HOM05D005662 ORTHO05D007004 1.3e-78 297.0 213 68.5
Carub.0008s2298 Capsella rubella HOM05D005662 ORTHO05D007004 1.6e-76 290.0 237 62.0
Ca_30761_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 1.6e-76 290.0 235 63.4
Sp2g25490 Schrenkiella parvula HOM05D005662 ORTHO05D007004 1.0e-75 287.3 232 62.1
ECA232G3412 Erigeron canadensis HOM05D005662 ORTHO05D007004 1.3e-75 287.0 233 63.9
AL8G39110 Arabidopsis lyrata HOM05D005662 ORTHO05D007004 3.0e-75 285.8 237 62.0
CARHR276070 Cardamine hirsuta HOM05D005662 ORTHO05D007004 3.0e-75 285.8 238 62.2
DCAR_015743 Daucus carota HOM05D005662 ORTHO05D007004 5.1e-75 285.0 231 63.2
SalBow4G2223 Salvia bowleyana HOM05D005662 ORTHO05D007004 8.6e-75 284.3 235 61.7
SalBow4G3324 Salvia bowleyana HOM05D005662 ORTHO05D007004 8.6e-75 284.3 235 61.7
PSO478G4436 Papaver somniferum HOM05D005662 ORTHO05D007004 1.5e-74 283.5 233 63.1
HPP92_004603 Vanilla planifolia HOM05D005662 ORTHO05D007004 1.5e-74 283.5 225 64.4
AT5G62290 Arabidopsis thaliana HOM05D005662 ORTHO05D007004 3.3e-74 282.3 236 61.4
Medtr4g033850 Medicago truncatula HOM05D005662 ORTHO05D007004 9.6e-74 280.8 234 61.5
Duzib084G0609 Durio zibethinus HOM05D005662 ORTHO05D007004 1.6e-73 280.0 233 62.7
PSO782G3258 Papaver somniferum HOM05D005662 ORTHO05D007004 2.8e-73 279.3 233 62.2
SGA_v2.0_scaffold2G01165 Striga asiatica HOM05D005662 ORTHO05D007004 2.8e-73 279.3 236 63.6
Migut.F00442 Erythranthe guttata HOM05D005662 ORTHO05D007004 8.1e-73 277.7 235 62.1
Phvul.011G004300 Phaseolus vulgaris HOM05D005662 ORTHO05D007004 2.4e-72 276.2 235 63.0
BcaB07g29785 Brassica carinata HOM05D005662 ORTHO05D007004 4.0e-72 275.4 240 60.0
HanXRQChr16g0512531 Helianthus annuus HOM05D005662 ORTHO05D007004 8.9e-72 274.2 235 63.4
Lalb_Chr04g0260971 Lupinus albus HOM05D005662 ORTHO05D007004 2.6e-71 272.7 234 60.7
Sed0027239 Sechium edule HOM05D005662 ORTHO05D007004 3.4e-71 272.3 237 57.8
arahy.Tifrunner.gnm1.ann1.93Q1AU Arachis hypogaea HOM05D005662 ORTHO05D007004 4.4e-71 271.9 234 62.4
A02p42240 Brassica napus HOM05D005662 ORTHO05D007004 5.8e-71 271.6 236 59.7
C02p62090 Brassica napus HOM05D005662 ORTHO05D007004 5.8e-71 271.6 237 59.9
Aa31LG11G1300 Aethionema arabicum HOM05D005662 ORTHO05D007004 1.7e-70 270.0 234 59.4
Psat7g191960 Pisum sativum HOM05D005662 ORTHO05D007004 1.7e-70 270.0 236 61.0
arahy.Tifrunner.gnm1.ann1.QSR7PX Arachis hypogaea HOM05D005662 ORTHO05D007004 8.4e-70 267.7 234 61.5
MELO3C005412.2 Cucumis melo HOM05D005662 ORTHO05D007004 1.1e-69 267.3 237 57.8
SGA_v2.0_scaffold486G52387 Striga asiatica HOM05D005662 ORTHO05D007004 3.2e-69 265.8 237 60.8
arahy.Tifrunner.gnm1.ann1.TMT042 Arachis hypogaea HOM05D005662 ORTHO05D007004 4.2e-69 265.4 234 61.1
EL10Ac3g05805 Beta vulgaris HOM05D005662 ORTHO05D007004 5.4e-69 265.0 232 58.6
arahy.Tifrunner.gnm1.ann1.LZP622 Arachis hypogaea HOM05D005662 ORTHO05D007004 9.3e-69 264.2 234 61.5
TPR.G15119 Trifolium pratense HOM05D005662 ORTHO05D007004 9.3e-69 264.2 234 58.1
BolC3t18716H Brassica oleracea HOM05D005662 ORTHO05D007004 2.1e-68 263.1 241 58.1
Glyma.14G044000 Glycine max HOM05D005662 ORTHO05D007004 2.7e-68 262.7 236 60.2
VMungo1127G2067 Vigna mungo HOM05D005662 ORTHO05D007004 6.0e-68 261.5 237 61.2
Lalb_Chr15g0077021 Lupinus albus HOM05D005662 ORTHO05D007004 7.8e-68 261.2 235 59.1
Rhsim03G0170700 Rhododendron simsii HOM05D005662 ORTHO05D007004 8.7e-67 257.7 286 50.0
Hund04625 Selenicereus undatus HOM05D005662 ORTHO05D007004 8.7e-67 257.7 215 60.5
Glyma.09G233200 Glycine max HOM05D005662 ORTHO05D007004 3.3e-66 255.8 212 63.2
unitig_37.g12504 Utricularia gibba HOM05D005662 ORTHO05D007004 9.6e-66 254.2 213 62.0
ATR0733G084 Amborella trichopoda HOM05D005662 ORTHO05D007004 1.3e-65 253.8 232 58.6
BraA06t25849Z Brassica rapa HOM05D005662 ORTHO05D007004 1.3e-65 253.8 243 57.2
Lj3g0023650 Lotus japonicus HOM05D005662 ORTHO05D007004 2.8e-65 252.7 250 57.2
ClCG01G005160 Citrullus lanatus HOM05D005662 ORTHO05D007004 4.8e-65 251.9 277 50.2
BraA02t09152Z Brassica rapa HOM05D005662 ORTHO05D007004 6.2e-65 251.5 252 54.0
C03p64570 Brassica napus HOM05D000207 ORTHO05D001482 1.3e-62 243.8 217 58.1
Ca_00244_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 9.3e-61 237.7 174 67.8
A06p29040 Brassica napus HOM05D000207 ORTHO05D001482 6.0e-60 235.0 218 57.3
Os10g0170000 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 2.3e-59 233.0 234 53.8
Haze_13835 Corylus avellana HOM05D005662 ORTHO05D007004 8.7e-59 231.1 233 53.2
Sed0014362 Sechium edule HOM05D005662 ORTHO05D007004 1.1e-58 230.7 234 51.3
Os03g0249300 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 6.2e-57 224.9 237 51.1
SEGI_33447 Sequoiadendron giganteum HOM05D005662 ORTHO05D007004 2.0e-55 219.9 224 56.7
Zm00001eb224250 Zea mays HOM05D005662 ORTHO05D007004 3.5e-52 209.1 237 50.6
Cfa008223 Carpinus fangiana HOM05D000922 ORTHO05D007004 1.3e-51 207.2 159 63.5
Atru.chr1.654 Acer truncatum HOM05D005662 ORTHO05D007004 2.3e-51 206.5 169 60.9
Zm00001eb010690 Zea mays HOM05D005662 ORTHO05D007004 4.8e-49 198.7 269 45.4
Sabra15G0143400 Salix brachista HOM05D005662 ORTHO05D007004 2.7e-44 183.0 184 53.8
PSO063G7367 Papaver somniferum HOM05D005662 ORTHO05D007004 7.9e-44 181.4 135 65.9
Pp3c5_5760 Physcomitrium patens HOM05D005662 ORTHO05D007004 6.7e-43 178.3 236 43.6
AUR62016115 Chenopodium quinoa HOM05D005662 ORTHO05D007004 1.1e-42 177.6 228 43.4
Pp3c16_14910 Physcomitrium patens HOM05D005662 ORTHO05D007004 4.8e-41 172.2 230 43.9
SMO351G0592 Selaginella moellendorffii HOM05D005662 ORTHO05D007004 6.3e-41 171.8 223 45.3
Mapoly0005s0155 Marchantia polymorpha HOM05D005662 ORTHO05D007004 8.2e-41 171.4 229 41.9
Sc13g0007790 Simmondsia chinensis HOM05D005662 ORTHO05D007004 2.0e-39 166.8 141 60.3
CAN.G152.22 Capsicum annuum HOM05D005662 ORTHO05D007004 2.6e-39 166.4 131 61.8
Cpa.g.sc130.1 Carica papaya HOM05D005662 ORTHO05D007004 7.2e-37 158.3 93 78.5
CBR_g40194 Chara braunii HOM05D005662 ORTHO05D007004 1.6e-36 157.1 235 40.4
Lsat_1_v5_gn_9_52481 Lactuca sativa HOM05D005662 ORTHO05D007004 6.7e-35 151.8 218 42.7
BcaC03g18141 Brassica carinata HOM05D000207 ORTHO05D001482 4.5e-31 139.0 130 57.7
Ah.13g067320 Amaranthus hybridus HOM05D005662 ORTHO05D007004 8.5e-30 134.8 92 65.2
AagrBONN_evm.TU.Sc2ySwM_368.1564 Anthoceros agrestis HOM05D005662 ORTHO05D007004 1.4e-29 134.0 142 52.8
DCAR_018618 Daucus carota HOM05D005662 ORTHO05D007004 4.4e-26 122.5 142 49.3
AUR62035061 Chenopodium quinoa HOM05D005662 ORTHO05D007004 1.7e-25 120.6 102 57.8
Ah.13g067330 Amaranthus hybridus HOM05D005662 ORTHO05D007004 1.5e-23 114.0 97 60.8
PRCOL_00002770 Prasinoderma coloniale HOM05D005662 ORTHO05D007004 4.5e-23 112.5 219 37.9
Thecc.03G160100 Theobroma cacao HOM05D005662 ORTHO05D007004 1.4e-21 107.5 147 47.6
Cre12.g538150 Chlamydomonas reinhardtii HOM05D005662 ORTHO05D007004 5.5e-21 105.5 221 31.7
DCAR_021652 Daucus carota HOM05D000949 ORTHO05D001276 2.6e-18 96.7 117 48.7
COL.COLO4_29300 Corchorus olitorius HOM05D005662 ORTHO05D007004 4.8e-17 92.4 109 45.0
Ciclev10006356m.g Citrus clementina HOM05D005662 ORTHO05D007004 1.8e-16 90.5 81 55.6
arahy.Tifrunner.gnm1.ann1.6UH5I2 Arachis hypogaea HOM05D005662 ORTHO05D007004 2.0e-15 87.0 136 43.4
MCO15G129 Micromonas commoda HOM05D005662 ORTHO05D007004 3.5e-15 86.3 262 28.2
Solyc06g011630.1 Solanum lycopersicum HOM05D005662 ORTHO05D007004 5.9e-15 85.5 53 71.7
DCAR_023430 Daucus carota HOM05D005662 ORTHO05D004064 2.9e-14 83.2 81 53.1
arahy.Tifrunner.gnm1.ann1.8PDC51 Arachis hypogaea HOM05D005662 ORTHO05D007004 1.9e-13 80.5 94 46.8
FvH4_3g21360 Fragaria vesca HOM05D005731 ORTHO05D012104 6.7e-11 72.0 88 48.9
DCAR_026119 Daucus carota HOM05D000323 ORTHO05D000201 2.2e-09 67.0 104 38.5
BolC2t12268H Brassica oleracea HOM05D005662 ORTHO05D007004 3.8e-06 56.2 57 45.6


User provided reference genes

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