Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G0278 Trochodendron aralioides HOM05D004985 ORTHO05D005912 2.7e-166 588.6 296 100.0
Dinv22782 Davidia involucrata HOM05D004985 ORTHO05D005912 2.8e-126 455.7 284 79.9
GSVIVG01007867001 Vitis vinifera HOM05D004985 ORTHO05D005912 4.7e-126 454.9 297 75.8
Eucgr.K02531 Eucalyptus grandis HOM05D004985 ORTHO05D005912 1.4e-125 453.4 296 77.7
COL.COLO4_06857 Corchorus olitorius HOM05D004985 ORTHO05D005912 2.3e-125 452.6 296 75.3
Manes.14G085700 Manihot esculenta HOM05D004985 ORTHO05D005912 2.3e-125 452.6 296 75.3
Hma1.2p1_0060F.1_g033100 Hydrangea macrophylla HOM05D004985 ORTHO05D005912 3.0e-125 452.2 296 75.0
Cc09_g09310 Coffea canephora HOM05D004985 ORTHO05D005912 2.0e-124 449.5 296 74.7
Atru.chr9.579 Acer truncatum HOM05D004985 ORTHO05D005912 2.6e-124 449.1 296 75.7
MBI19_g00634_MAGBIO Magnolia biondii HOM05D004985 ORTHO05D005912 2.6e-124 449.1 296 77.0
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 3.4e-124 448.7 298 75.2
Ciclev10021430m.g Citrus clementina HOM05D004985 ORTHO05D005912 3.4e-124 448.7 296 74.3
Thecc.03G101800 Theobroma cacao HOM05D004985 ORTHO05D005912 5.7e-124 448.0 296 75.0
CSS0016421 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 1.3e-123 446.8 296 74.7
CSS0040501 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 1.3e-123 446.8 296 74.7
Gohir.A07G068600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 2.4e-122 442.6 297 75.1
QL10p019503 Quercus lobata HOM05D004985 ORTHO05D005912 1.2e-121 440.3 295 73.9
Duzib205G0214 Durio zibethinus HOM05D004985 ORTHO05D005912 2.7e-121 439.1 296 73.6
Gohir.D07G073100 Gossypium hirsutum HOM05D004985 ORTHO05D005912 2.7e-121 439.1 297 74.1
Potri.012G066200 Populus trichocarpa HOM05D004985 ORTHO05D005912 2.7e-121 439.1 296 73.6
Prupe.5G205100 Prunus persica HOM05D004985 ORTHO05D005912 3.5e-121 438.7 299 74.2
CiPaw.11G053300 Carya illinoinensis HOM05D004985 ORTHO05D005912 5.9e-121 438.0 296 73.0
Gorai.001G077300 Gossypium raimondii HOM05D004985 ORTHO05D005912 5.9e-121 438.0 297 73.7
PGR044G1445 Punica granatum HOM05D004985 ORTHO05D005912 5.9e-121 438.0 296 72.3
Aqoxy3G03694 Aquilegia oxysepala HOM05D004985 ORTHO05D005912 7.8e-121 437.6 300 75.0
TWI31G1299 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 1.7e-120 436.4 296 73.3
vmacro17610 Vaccinium macrocarpon HOM05D004985 ORTHO05D005912 1.7e-120 436.4 297 74.4
Oeu014411.1 Olea europaea HOM05D004985 ORTHO05D005912 6.6e-120 434.5 299 72.9
Cpa.g.sc94.56 Carica papaya HOM05D004985 ORTHO05D005912 3.3e-119 432.2 296 73.3
PSO017G5703 Papaver somniferum HOM05D004985 ORTHO05D005912 1.6e-118 429.9 296 72.6
PSO478G5014 Papaver somniferum HOM05D004985 ORTHO05D005912 1.6e-118 429.9 299 73.2
RcHm_v2.0_Chr7g0183091 Rosa chinensis HOM05D004985 ORTHO05D005912 8.0e-118 427.6 298 72.1
Sabra12G0048600 Salix brachista HOM05D004985 ORTHO05D005912 8.0e-118 427.6 320 68.1
arahy.Tifrunner.gnm1.ann1.B21894 Arachis hypogaea HOM05D004985 ORTHO05D005912 8.9e-117 424.1 300 71.0
Glyma.04G162700 Glycine max HOM05D004985 ORTHO05D005912 1.2e-116 423.7 296 71.6
arahy.Tifrunner.gnm1.ann1.XT1KNI Arachis hypogaea HOM05D004985 ORTHO05D005912 2.6e-116 422.5 300 70.7
Oeu042721.3 Olea europaea HOM05D004985 ORTHO05D005912 2.6e-116 422.5 299 71.6
PGSC0003DMG400030337 Solanum tuberosum HOM05D004985 ORTHO05D005912 4.4e-116 421.8 295 72.2
MSTRG.9599 Avicennia marina HOM05D004985 ORTHO05D005912 7.5e-116 421.0 299 70.9
FvH4_5g13840 Fragaria vesca HOM05D004985 ORTHO05D005912 7.5e-116 421.0 299 70.9
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 4.9e-115 418.3 309 69.3
CsaV3_1G002920 Cucumis sativus L. HOM05D004985 ORTHO05D005912 6.4e-115 417.9 296 69.3
Sed0020095 Sechium edule HOM05D004985 ORTHO05D005912 8.3e-115 417.5 296 68.9
Glyma.06G203300 Glycine max HOM05D004985 ORTHO05D005912 1.1e-114 417.2 298 70.5
Solyc06g076510.3 Solanum lycopersicum HOM05D004985 ORTHO05D005912 4.1e-114 415.2 295 71.2
FAN13G1687 Fragaria x ananassa HOM05D004985 ORTHO05D005912 5.4e-114 414.8 299 69.9
Sopen06g032910 Solanum pennellii HOM05D004985 ORTHO05D005912 1.6e-113 413.3 295 70.5
Phvul.010G007300 Phaseolus vulgaris HOM05D004985 ORTHO05D005912 1.3e-112 410.2 300 70.7
MSTRG.15338 Avicennia marina HOM05D004985 ORTHO05D005912 1.7e-112 409.8 303 68.6
Lj1g0020192 Lotus japonicus HOM05D004985 ORTHO05D005912 1.7e-112 409.8 295 70.5
Migut.D01657 Erythranthe guttata HOM05D004985 ORTHO05D005912 5.0e-112 408.3 299 69.9
Ca_14341_v3 Cicer arietinum L. HOM05D004985 ORTHO05D005912 8.6e-112 407.5 296 68.9
CAN.G394.86 Capsicum annuum HOM05D004985 ORTHO05D005912 1.9e-111 406.4 297 69.7
DCAR_029981 Daucus carota HOM05D004985 ORTHO05D005912 1.9e-111 406.4 298 70.8
AUR62021560 Chenopodium quinoa HOM05D004985 ORTHO05D005912 2.5e-111 406.0 297 68.4
Lsat_1_v5_gn_2_122560 Lactuca sativa HOM05D004985 ORTHO05D005912 2.5e-111 406.0 296 68.6
TPR.G12221 Trifolium pratense HOM05D004985 ORTHO05D005912 3.3e-111 405.6 295 69.5
AL1G31080 Arabidopsis lyrata HOM05D004985 ORTHO05D005912 4.3e-111 405.2 297 67.7
Hund02586 Selenicereus undatus HOM05D004985 ORTHO05D005912 5.6e-111 404.8 299 68.9
ClCG06G015640 Citrullus lanatus HOM05D004985 ORTHO05D005912 7.3e-111 404.4 311 65.6
Manes.06G084800 Manihot esculenta HOM05D004985 ORTHO05D005912 7.3e-111 404.4 252 78.2
Nitab4.5_0000116g0440 Nicotiana tabacum HOM05D004985 ORTHO05D005912 7.3e-111 404.4 295 70.2
AT1G18640 Arabidopsis thaliana HOM05D004985 ORTHO05D005912 9.5e-111 404.1 297 67.7
Peaxi162Scf00481g00631 Petunia axillaris HOM05D004985 ORTHO05D005912 2.1e-110 402.9 296 68.9
THA.LOC104812106 Tarenaya hassleriana HOM05D004985 ORTHO05D005912 2.8e-110 402.5 296 68.2
TAR622G1020 Trochodendron aralioides HOM05D004985 ORTHO05D005912 2.8e-110 402.5 296 70.3
AUR62008533 Chenopodium quinoa HOM05D004985 ORTHO05D005912 3.6e-110 402.1 297 68.7
Medtr3g025840 Medicago truncatula HOM05D004985 ORTHO05D005912 6.2e-110 401.4 296 67.6
BraA06t24599Z Brassica rapa HOM05D004985 ORTHO05D005912 8.1e-110 401.0 298 67.1
Psat5g208200 Pisum sativum HOM05D004985 ORTHO05D005912 8.1e-110 401.0 299 68.9
TWI79G1560 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 1.1e-109 400.6 230 83.5
CANSAT35G1156 Cannabis sativa HOM05D004985 ORTHO05D005912 1.4e-109 400.2 300 69.0
A06p14760 Brassica napus HOM05D004985 ORTHO05D005912 3.1e-109 399.1 298 66.8
ECA232G4926 Erigeron canadensis HOM05D004985 ORTHO05D005912 3.1e-109 399.1 296 66.6
Thhalv10008334m.g Eutrema salsugineum HOM05D004985 ORTHO05D005912 3.1e-109 399.1 297 67.3
SGA_v2.0_scaffold42G16037 Striga asiatica HOM05D004985 ORTHO05D005912 4.0e-109 398.7 299 67.6
Sp1g16610 Schrenkiella parvula HOM05D004985 ORTHO05D005912 6.8e-109 397.9 298 67.1
MD14G1211600 Malus domestica HOM05D004985 ORTHO05D005912 8.9e-109 397.5 255 78.0
Carub.0001s1827 Capsella rubella HOM05D004985 ORTHO05D005912 1.2e-108 397.1 297 67.0
Carub.0007s3048 Capsella rubella HOM05D004985 ORTHO05D005912 1.2e-108 397.1 298 66.8
VMungo0331G0044 Vigna mungo HOM05D004985 ORTHO05D005912 1.2e-108 397.1 298 67.8
BcaB07g31884 Brassica carinata HOM05D004985 ORTHO05D005912 1.5e-108 396.7 298 66.4
MELO3C017224.2 Cucumis melo HOM05D004985 ORTHO05D005912 2.6e-108 396.0 331 62.2
CARHR019270 Cardamine hirsuta HOM05D004985 ORTHO05D005912 7.5e-108 394.4 296 66.2
Rhsim08G0146000 Rhododendron simsii HOM05D004985 ORTHO05D005912 1.3e-107 393.7 367 59.1
Nitab4.5_0004739g0030 Nicotiana tabacum HOM05D004985 ORTHO05D005912 3.7e-107 392.1 283 71.0
TPR.G28540 Trifolium pratense HOM05D004985 ORTHO05D005912 3.7e-107 392.1 296 68.2
Lalb_Chr12g0197201 Lupinus albus HOM05D004985 ORTHO05D005912 4.9e-107 391.7 300 67.7
MD06G1202500 Malus domestica HOM05D004985 ORTHO05D005912 6.4e-107 391.3 255 77.6
Haze_18480 Corylus avellana HOM05D004985 ORTHO05D005912 3.2e-106 389.0 272 71.7
Sed0001113 Sechium edule HOM05D004985 ORTHO05D005912 3.2e-106 389.0 296 65.5
Aa31LG7G3400 Aethionema arabicum HOM05D004985 ORTHO05D005912 4.1e-106 388.7 332 62.0
FAN18G1860 Fragaria x ananassa HOM05D004985 ORTHO05D005912 4.1e-106 388.7 299 66.6
BcaC05g25759 Brassica carinata HOM05D004985 ORTHO05D005912 5.4e-106 388.3 298 65.4
C05p16910 Brassica napus HOM05D004985 ORTHO05D005912 5.4e-106 388.3 298 65.4
BolC5t30393H Brassica oleracea HOM05D004985 ORTHO05D005912 5.4e-106 388.3 298 65.4
SalBow4G0956 Salvia bowleyana HOM05D004985 ORTHO05D005912 5.4e-106 388.3 299 67.9
A08p30280 Brassica napus HOM05D004985 ORTHO05D005912 1.6e-105 386.7 295 65.4
FAN08G1159 Fragaria x ananassa HOM05D004985 ORTHO05D005912 2.1e-105 386.3 302 67.2
Nn4g23424 Nelumbo nucifera HOM05D004985 ORTHO05D005912 1.7e-104 383.3 284 70.1
HanXRQChr09g0270221 Helianthus annuus HOM05D004985 ORTHO05D005912 2.3e-104 382.9 255 73.3
Lj1g0027941 Lotus japonicus HOM05D004985 ORTHO05D005912 2.5e-103 379.4 295 67.8
Duzib084G0347 Durio zibethinus HOM05D004985 ORTHO05D005912 1.3e-99 367.1 296 63.9
Nn3g17450 Nelumbo nucifera HOM05D004985 ORTHO05D005912 1.3e-99 367.1 256 73.8
Os11g0629500 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 8.4e-99 364.4 250 72.8
BraA08t34961Z Brassica rapa HOM05D004985 ORTHO05D005912 7.1e-98 361.3 222 76.6
C08p18810 Brassica napus HOM05D004985 ORTHO05D005912 1.2e-97 360.5 348 56.3
ATR0681G325 Amborella trichopoda HOM05D004985 ORTHO05D005912 2.7e-97 359.4 223 77.1
EL10Ac8g18666 Beta vulgaris HOM05D004985 ORTHO05D005912 1.3e-96 357.1 221 77.8
unitig_60.g25411 Utricularia gibba HOM05D004985 ORTHO05D005912 1.7e-96 356.7 262 68.7
Os12g0502400 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 3.0e-96 355.9 274 65.0
AUR62008530 Chenopodium quinoa HOM05D004985 ORTHO05D005912 1.2e-94 350.5 297 62.6
Zm00001eb166440 Zea mays HOM05D004985 ORTHO05D005912 2.1e-94 349.7 226 74.8
BolC8t49507H Brassica oleracea HOM05D004985 ORTHO05D005912 2.1e-89 333.2 265 64.9
BcaC07g38933 Brassica carinata HOM05D004985 ORTHO05D005912 4.6e-89 332.0 262 65.3
Cc11_g04830 Coffea canephora HOM05D004985 ORTHO05D005912 3.0e-88 329.3 261 67.0
AagrBONN_evm.TU.Sc2ySwM_228.2773 Anthoceros agrestis HOM05D004985 ORTHO05D005912 5.6e-87 325.1 222 69.8
Pp3c8_16890 Physcomitrium patens HOM05D004985 ORTHO05D005912 2.8e-86 322.8 291 57.4
Sc10g0009710 Simmondsia chinensis HOM05D004985 ORTHO05D005912 9.0e-85 317.8 226 71.2
SMO137G0315 Selaginella moellendorffii HOM05D004985 ORTHO05D005912 5.8e-84 315.1 224 66.1
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 2.2e-83 313.2 232 67.7
CDE06G0240 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 1.1e-82 310.8 195 77.9
Mapoly0023s0019 Marchantia polymorpha HOM05D004985 ORTHO05D005912 6.2e-78 295.0 219 65.3
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 5.5e-74 282.0 287 54.7
CDE07G0155 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 2.7e-73 279.6 285 51.2
PRCOL_00003809 Prasinoderma coloniale HOM05D004985 ORTHO05D005912 1.7e-67 260.4 234 58.1
Nitab4.5_0000744g0020 Nicotiana tabacum HOM05D004985 ORTHO05D005912 9.3e-66 254.6 425 40.7
MCO16G297 Micromonas commoda HOM05D004985 ORTHO05D005912 2.3e-64 250.0 224 55.4
Lj7A653T48 Lonicera japonica HOM05D004985 ORTHO05D005912 4.1e-61 239.2 142 82.4
Cre04.g217955 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 1.7e-59 233.8 221 51.6
Cre04.g217959 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 1.7e-59 233.8 221 51.6
SGA_v2.0_scaffold3G01460 Striga asiatica HOM05D004985 ORTHO05D005912 9.3e-58 228.0 142 76.8
HPP92_012184 Vanilla planifolia HOM05D004985 ORTHO05D005912 1.8e-53 213.8 186 57.5
Nitab4.5_0002968g0050 Nicotiana tabacum HOM05D004985 ORTHO05D005912 4.1e-53 212.6 133 75.9
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.3e-51 207.6 232 46.1
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 2.2e-51 206.8 251 44.2
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 3.8e-51 206.1 254 43.3
Haze_07724 Corylus avellana HOM05D004985 ORTHO05D005912 2.1e-49 200.3 155 66.5
SGA_v2.0_scaffold1066G53824 Striga asiatica HOM05D004985 ORTHO05D005912 5.9e-44 182.2 167 59.9
HPP92_012182 Vanilla planifolia HOM05D004985 ORTHO05D005912 6.5e-43 178.7 112 79.5
EL10Ac1g02367 Beta vulgaris HOM05D004985 ORTHO05D005912 1.9e-42 177.2 165 58.8
Gohir.A07G164340 Gossypium hirsutum HOM05D004985 ORTHO05D005912 8.2e-38 161.8 99 79.8
Gohir.A06G085600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 2.2e-35 153.7 97 78.4
CBR_g37694 Chara braunii HOM05D004985 ORTHO05D005912 8.8e-32 141.7 108 60.2
SEGI_10948 Sequoiadendron giganteum HOM05D004985 ORTHO05D005912 2.2e-30 137.1 81 81.5
Peaxi162Scf00086g01110 Petunia axillaris HOM05D004985 ORTHO05D005912 7.7e-28 128.6 157 51.0
SalBow5G1356 Salvia bowleyana HOM05D004985 ORTHO05D005912 1.1e-26 124.8 101 68.3
Cfa004103 Carpinus fangiana HOM05D004985 ORTHO05D005912 2.5e-26 123.6 154 49.4
Oeu014405.1 Olea europaea HOM05D004985 ORTHO05D005912 3.2e-26 123.2 91 69.2
Haze_15308 Corylus avellana HOM05D004985 ORTHO05D005912 3.7e-22 109.8 67 77.6
SHI27080 Sapria himalayana HOM05D004985 ORTHO05D005912 7.2e-18 95.5 120 47.5
Cfa024059 Carpinus fangiana HOM05D004985 ORTHO05D005912 4.7e-09 66.2 177 32.2


User provided reference genes

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