Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G0213 Trochodendron aralioides HOM05D006657 ORTHO05D005964 0.0e+00 1865.9 938 100.0
TAR375G0071 Trochodendron aralioides HOM05D006657 ORTHO05D005964 0.0e+00 1219.5 953 69.9
TAR629G2606 Trochodendron aralioides HOM05D006657 ORTHO05D005964 1.5e-218 763.8 858 54.2
Dinv17292 Davidia involucrata HOM05D006657 ORTHO05D005964 2.0e-202 710.3 960 47.0
GSVIVG01038660001 Vitis vinifera HOM05D006657 ORTHO05D005964 3.2e-197 693.0 965 44.8
Dinv29204 Davidia involucrata HOM05D006657 ORTHO05D005964 1.1e-181 641.3 949 44.4
CSS0010102 Camellia sinensis var. sinensis HOM05D006657 ORTHO05D005964 1.0e-174 618.2 950 43.7
Actinidia34275 Actinidia chinensis HOM05D006657 ORTHO05D005964 7.1e-160 568.9 955 41.7
Nn1g05264 Nelumbo nucifera HOM05D006657 ORTHO05D005964 4.4e-154 549.7 959 41.3
QL09p006779 Quercus lobata HOM05D006657 ORTHO05D005964 6.4e-153 545.8 954 41.2
Haze_00307 Corylus avellana HOM05D006657 ORTHO05D005964 4.9e-137 493.0 937 40.8
Cfa016147 Carpinus fangiana HOM05D006657 ORTHO05D005964 1.8e-131 474.6 938 40.3
Manes.01G044100 Manihot esculenta HOM05D006657 ORTHO05D005964 2.9e-121 440.7 947 35.9
Prupe.2G320100 Prunus persica HOM05D006657 ORTHO05D005964 7.4e-117 426.0 940 36.7
vmacro10166 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 1.8e-115 421.4 945 36.7
CiPaw.05G206100 Carya illinoinensis HOM05D006657 ORTHO05D005964 2.4e-115 421.0 949 37.4
Potri.015G003700 Populus trichocarpa HOM05D006657 ORTHO05D005964 1.4e-112 411.8 929 36.1
Sabra15G0002400 Salix brachista HOM05D006657 ORTHO05D005964 3.6e-111 407.1 943 36.2
FvH4_7g33030 Fragaria vesca HOM05D006657 ORTHO05D005964 7.9e-111 406.0 954 35.7
Actinidia08706 Actinidia chinensis HOM05D006657 ORTHO05D005964 1.4e-110 405.2 721 39.5
RcHm_v2.0_Chr1g0383041 Rosa chinensis HOM05D006657 ORTHO05D005964 1.8e-110 404.8 993 34.8
FAN10G1617 Fragaria x ananassa HOM05D006657 ORTHO05D005964 1.5e-109 401.7 954 35.4
FAN10G2847 Fragaria x ananassa HOM05D006657 ORTHO05D005964 2.6e-109 401.0 955 35.7
FAN03G1526 Fragaria x ananassa HOM05D006657 ORTHO05D005964 1.1e-107 395.6 951 35.3
Duzib205G0597 Durio zibethinus HOM05D006657 ORTHO05D005964 1.8e-107 394.8 938 37.1
Sabra12G0004100 Salix brachista HOM05D006657 ORTHO05D005964 3.4e-106 390.6 952 34.8
vmacro06453 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 1.1e-104 385.6 953 34.1
Ciclev10018632m.g Citrus clementina HOM05D006657 ORTHO05D005964 6.1e-103 379.8 968 35.5
Rhsim03G0216600 Rhododendron simsii HOM05D006657 ORTHO05D005964 2.0e-101 374.8 931 34.6
Thecc.03G210000 Theobroma cacao HOM05D006657 ORTHO05D005964 3.3e-101 374.0 939 36.6
Rhsim09G0210400 Rhododendron simsii HOM05D006657 ORTHO05D005964 4.8e-100 370.2 937 34.6
MD07G1301500 Malus domestica HOM05D006657 ORTHO05D005964 1.4e-99 368.6 893 34.3
Potri.012G007000 Populus trichocarpa HOM05D006657 ORTHO05D005964 9.1e-99 365.9 946 33.4
Duzib068G0081 Durio zibethinus HOM05D006657 ORTHO05D005964 3.5e-98 364.0 941 36.0
Sabra12G0008600 Salix brachista HOM05D006657 ORTHO05D005964 1.3e-97 362.1 945 33.8
Duzib084G0166 Durio zibethinus HOM05D006657 ORTHO05D005964 1.9e-96 358.2 939 34.8
MD01G1229500 Malus domestica HOM05D006657 ORTHO05D005964 5.2e-94 350.1 896 33.4
COL.COLO4_14382 Corchorus olitorius HOM05D006657 ORTHO05D005964 1.6e-90 338.6 937 34.8
Cc07_g20200 Coffea canephora HOM05D006657 ORTHO05D005964 3.6e-87 327.4 966 31.9
QL02p027097 Quercus lobata HOM05D013249 ORTHO05D011012 3.6e-87 327.4 890 32.1
Oeu055400.1 Olea europaea HOM05D006657 ORTHO05D005964 4.7e-87 327.0 956 32.1
DCAR_008990 Daucus carota HOM05D006657 ORTHO05D005964 1.0e-86 325.9 935 31.2
Atru.chr12.2479 Acer truncatum HOM05D006657 ORTHO05D005964 3.4e-85 320.9 621 39.0
MBI12_g20086_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 5.4e-83 313.5 1084 31.7
Gorai.004G125800 Gossypium raimondii HOM05D006657 ORTHO05D005964 9.1e-83 312.8 941 32.1
MBI04_g37612_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 2.3e-81 308.1 958 33.7
CANSAT21G0900 Cannabis sativa HOM05D006657 ORTHO05D005964 2.5e-80 304.7 949 31.4
TWI14G0251 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 1.2e-79 302.4 941 32.7
Gohir.D08G117100 Gossypium hirsutum HOM05D006657 ORTHO05D005964 4.7e-79 300.4 941 31.5
TWI23G1261 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 1.3e-76 292.4 944 31.6
DCAR_020382 Daucus carota HOM05D006657 ORTHO05D005964 1.2e-74 285.8 950 29.8
Aqoxy5G04358 Aquilegia oxysepala HOM05D006657 ORTHO05D005964 7.3e-72 276.6 976 29.3
Potri.001G452300 Populus trichocarpa HOM05D011672 ORTHO05D011012 2.9e-68 264.6 959 29.9
PSO170G0737 Papaver somniferum HOM05D006657 ORTHO05D005964 8.3e-68 263.1 1051 29.2
PSO782G1897 Papaver somniferum HOM05D006657 ORTHO05D005964 2.0e-66 258.5 1055 30.1
Migut.F00140 Erythranthe guttata HOM05D006657 ORTHO05D005964 1.1e-64 252.7 956 28.7
Haze_09217 Corylus avellana HOM05D013249 ORTHO05D011012 2.8e-63 248.1 960 29.3
Nitab4.5_0006821g0010 Nicotiana tabacum HOM05D006657 ORTHO05D005964 8.9e-62 243.0 956 29.9
SalBow4G2342 Salvia bowleyana HOM05D006657 ORTHO05D005964 2.0e-61 241.9 932 29.0
Peaxi162Scf00912g00114 Petunia axillaris HOM05D006657 ORTHO05D005964 5.8e-61 240.4 931 30.0
CAN.G303.40 Capsicum annuum HOM05D006657 ORTHO05D005964 1.7e-60 238.8 933 29.0
SalBow4G2934 Salvia bowleyana HOM05D006657 ORTHO05D005964 2.2e-60 238.4 932 29.0
MBI04_g41177_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 1.9e-59 235.3 672 34.1
PGSC0003DMG400000558 Solanum tuberosum HOM05D006657 ORTHO05D005964 2.4e-59 235.0 936 29.3
Sc13g0010540 Simmondsia chinensis HOM05D006657 ORTHO05D005964 3.2e-59 234.6 945 29.5
MSTRG.26967 Avicennia marina HOM05D006657 ORTHO05D005964 1.2e-58 232.6 980 28.0
Nitab4.5_0000021g0080 Nicotiana tabacum HOM05D006657 ORTHO05D005964 2.1e-58 231.9 954 29.4
Solyc03g080140.3 Solanum lycopersicum HOM05D006657 ORTHO05D005964 2.1e-58 231.9 926 29.7
Sabra16G0305400 Salix brachista HOM05D011672 ORTHO05D011012 1.3e-57 229.2 607 33.3
Gohir.A08G105800 Gossypium hirsutum HOM05D006657 ORTHO05D005964 6.6e-57 226.9 893 29.2
Sopen03g021870 Solanum pennellii HOM05D006657 ORTHO05D005964 6.6e-57 226.9 935 29.4
arahy.Tifrunner.gnm1.ann1.UMZ78C Arachis hypogaea HOM05D006657 ORTHO05D005964 1.1e-56 226.1 967 28.1
Lj1A1029T62 Lonicera japonica HOM05D006657 ORTHO05D005964 1.9e-56 225.3 493 37.3
Sed0019147 Sechium edule HOM05D006657 ORTHO05D005964 4.3e-56 224.2 924 28.5
arahy.Tifrunner.gnm1.ann1.UB23H3 Arachis hypogaea HOM05D006657 ORTHO05D005964 1.6e-55 222.2 961 28.0
Lalb_Chr23g0272001 Lupinus albus HOM05D006657 ORTHO05D005964 1.1e-54 219.5 519 33.9
CsaV3_4G008600 Cucumis sativus L. HOM05D006657 ORTHO05D005964 1.8e-54 218.8 952 27.9
AUR62005972 Chenopodium quinoa HOM05D006657 ORTHO05D005964 1.0e-49 203.0 969 28.6
EL10Ac3g05155 Beta vulgaris HOM05D006657 ORTHO05D005964 4.3e-48 197.6 996 27.7
Glyma.04G227100 Glycine max HOM05D006657 ORTHO05D005964 3.6e-47 194.5 864 27.8
Prupe.5G135100 Prunus persica HOM05D013249 ORTHO05D011012 3.6e-47 194.5 726 29.1
Glyma.06G138000 Glycine max HOM05D006657 ORTHO05D005964 6.2e-47 193.7 873 27.7
PGR042G1854 Punica granatum HOM05D006657 ORTHO05D005964 6.2e-47 193.7 989 26.1
AUR62028098 Chenopodium quinoa HOM05D006657 ORTHO05D005964 9.9e-45 186.4 978 27.7
Eucgr.K00044 Eucalyptus grandis HOM05D006657 ORTHO05D005964 1.3e-44 186.0 678 30.1
Hund23980 Selenicereus undatus HOM05D006657 ORTHO05D005964 8.4e-44 183.3 1011 27.6
Lj1g0002697 Lotus japonicus HOM05D006657 ORTHO05D005964 1.4e-43 182.6 499 31.3
Cpa.g.sc3.164 Carica papaya HOM05D006657 ORTHO05D005964 4.6e-42 177.6 942 26.3
Ca_16789_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 4.6e-42 177.6 982 26.3
Ca_16805_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 4.6e-42 177.6 982 26.3
Lalb_Chr11g0067471 Lupinus albus HOM05D006657 ORTHO05D005964 6.0e-42 177.2 959 26.6
Sabra11G0134500 Salix brachista HOM05D011672 ORTHO05D011012 6.6e-41 173.7 542 31.0
Potri.011G149601 Populus trichocarpa HOM05D011672 ORTHO05D011012 1.9e-40 172.2 513 30.6
Phvul.009G038600 Phaseolus vulgaris HOM05D006657 ORTHO05D005964 2.8e-39 168.3 814 26.4
Medtr3g093000 Medicago truncatula HOM05D006657 ORTHO05D005964 1.1e-38 166.4 846 26.8
ATR0579G071 Amborella trichopoda HOM05D006657 ORTHO05D005964 1.4e-38 166.0 958 24.5
Psat5g071280 Pisum sativum HOM05D006657 ORTHO05D005964 1.2e-37 162.9 648 29.0
CiPaw.12G074500 Carya illinoinensis HOM05D011672 ORTHO05D011012 3.4e-37 161.4 478 31.0
VMungo1309G0886 Vigna mungo HOM05D006657 ORTHO05D005964 1.1e-35 156.4 1037 25.0
TAR629G3494 Trochodendron aralioides HOM05D006657 ORTHO05D005964 3.5e-34 151.4 102 74.5
SGA_v2.0_scaffold44G16853 Striga asiatica HOM05D006657 ORTHO05D005964 4.6e-34 151.0 933 26.2
TPR.G33400 Trifolium pratense HOM05D006657 ORTHO05D005964 7.8e-34 150.2 526 29.1
CiPaw.06G040100 Carya illinoinensis HOM05D006657 ORTHO05D005964 2.3e-33 148.7 201 44.8
Oeu029332.2 Olea europaea HOM05D006657 ORTHO05D005964 2.3e-33 148.7 569 27.1
FAN01G2018 Fragaria x ananassa HOM05D006657 ORTHO05D005964 6.6e-33 147.1 208 43.3
Lsat_1_v5_gn_2_134840 Lactuca sativa HOM05D006657 ORTHO05D005964 1.5e-32 146.0 979 25.6
FAN13G1375 Fragaria x ananassa HOM05D013249 ORTHO05D011012 9.6e-32 143.3 644 26.6
SGA_v2.0_scaffold18G08476 Striga asiatica HOM05D006657 ORTHO05D005964 2.1e-31 142.1 947 26.8
FvH4_5g10390 Fragaria vesca HOM05D013249 ORTHO05D011012 9.0e-30 136.7 648 26.4
MD06G1124500 Malus domestica HOM05D013249 ORTHO05D011012 1.2e-29 136.3 591 27.9
Ah.13g070870 Amaranthus hybridus HOM05D006657 ORTHO05D005964 5.8e-29 134.0 986 25.4
Thecc.03G215600 Theobroma cacao HOM05D011672 ORTHO05D011012 5.8e-29 134.0 789 25.2
CDE02G0079 Ceratophyllum demersum HOM05D006657 ORTHO05D005964 9.9e-29 133.3 936 24.3
FAN08G0662 Fragaria x ananassa HOM05D013249 ORTHO05D011012 1.7e-28 132.5 648 25.9
FAN18G3072 Fragaria x ananassa HOM05D013249 ORTHO05D011012 1.7e-28 132.5 648 26.1
FAN04G0229 Fragaria x ananassa HOM05D013249 ORTHO05D011012 2.9e-28 131.7 641 24.6
RcHm_v2.0_Chr7g0187831 Rosa chinensis HOM05D013249 ORTHO05D011012 8.4e-28 130.2 798 25.1
Duzib068G0278 Durio zibethinus HOM05D011672 ORTHO05D011012 4.2e-27 127.9 950 26.4
Eucgr.A00967 Eucalyptus grandis HOM05D006657 ORTHO05D005964 2.3e-25 122.1 418 30.6
Ah.07g204540 Amaranthus hybridus HOM05D006657 ORTHO05D005964 8.7e-25 120.2 970 25.3
TWI81G0792 Tripterygium wilfordii HOM05D011672 ORTHO05D011012 1.5e-24 119.4 671 27.0
CDE04G2546 Ceratophyllum demersum HOM05D006657 ORTHO05D005964 1.5e-21 109.4 644 25.6
Duzib084G0474 Durio zibethinus HOM05D011672 ORTHO05D011012 9.9e-21 106.7 782 25.2
THA.LOC104799674 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 9.9e-21 106.7 583 24.0
Eucgr.K00452 Eucalyptus grandis HOM05D006657 ORTHO05D005964 4.9e-20 104.4 519 28.5
TPR.G4557 Trifolium pratense HOM05D013241 ORTHO05D011012 6.4e-20 104.0 535 25.2
Cpa.g.sc37.109 Carica papaya HOM05D011672 ORTHO05D012736 1.9e-19 102.4 710 24.2
Lj6g0008807 Lotus japonicus HOM05D013241 ORTHO05D011012 2.5e-19 102.1 538 26.4
Phvul.006G174000 Phaseolus vulgaris HOM05D013241 ORTHO05D011012 3.2e-19 101.7 437 27.2
CARHR158490 Cardamine hirsuta HOM05D009821 ORTHO05D005964 4.2e-19 101.3 213 33.8
Glyma.13G227600 Glycine max HOM05D013241 ORTHO05D011012 1.2e-18 99.8 539 27.3
HanXRQChr08g0226001 Helianthus annuus HOM05D006657 ORTHO05D005964 1.2e-18 99.8 252 31.3
A06p28240 Brassica napus HOM05D009821 ORTHO05D005964 2.1e-18 99.0 218 35.3
BraA06t25767Z Brassica rapa HOM05D009821 ORTHO05D005964 2.1e-18 99.0 218 35.3
Aa31LG11G3790 Aethionema arabicum HOM05D009821 ORTHO05D005964 2.7e-18 98.6 224 33.5
BcaC01g02410 Brassica carinata HOM05D009821 ORTHO05D005964 3.5e-18 98.2 219 32.0
C03p65560 Brassica napus HOM05D009821 ORTHO05D005964 3.5e-18 98.2 219 32.0
BolC3t18811H Brassica oleracea HOM05D009821 ORTHO05D005964 3.5e-18 98.2 219 32.0
Carub.0005s1582 Capsella rubella HOM05D009821 ORTHO05D005964 3.5e-18 98.2 216 32.4
Cc00_g14340 Coffea canephora HOM05D006657 ORTHO05D005964 3.5e-18 98.2 105 51.4
ECA233G2144 Erigeron canadensis HOM05D006657 ORTHO05D005964 3.5e-18 98.2 328 28.4
Medtr2g016640 Medicago truncatula HOM05D013241 ORTHO05D011012 1.8e-17 95.9 425 28.0
BcaB02g09591 Brassica carinata HOM05D009821 ORTHO05D005964 3.9e-17 94.7 217 34.6
Ca_00458_v3 Cicer arietinum L. HOM05D013241 ORTHO05D011012 6.7e-17 94.0 437 25.4
COL.COLO4_10845 Corchorus olitorius HOM05D011672 ORTHO05D011012 1.9e-16 92.4 385 27.3
AT3G49490 Arabidopsis thaliana HOM05D009821 ORTHO05D005964 2.5e-16 92.0 218 33.0
arahy.Tifrunner.gnm1.ann1.62N0H4 Arachis hypogaea HOM05D000074 ORTHO05D011012 7.4e-16 90.5 491 24.8
Lalb_Chr18g0054711 Lupinus albus HOM05D013241 ORTHO05D011012 9.6e-16 90.1 451 25.9
BolC8t50069H Brassica oleracea HOM05D009821 ORTHO05D005964 2.1e-15 89.0 225 32.0
BcaC07g39413 Brassica carinata HOM05D009821 ORTHO05D005964 3.7e-15 88.2 225 32.0
Cpa.g.sc9.388 Carica papaya HOM05D006657 ORTHO05D005964 3.7e-15 88.2 85 57.6
arahy.Tifrunner.gnm1.ann1.69Z0CE Arachis hypogaea HOM05D013241 ORTHO05D011012 4.8e-15 87.8 489 23.7
C08p24510 Brassica napus HOM05D009821 ORTHO05D005964 4.8e-15 87.8 225 32.0
A01p24720 Brassica napus HOM05D009821 ORTHO05D005964 6.2e-15 87.4 370 25.7
BraA01t02384Z Brassica rapa HOM05D009821 ORTHO05D005964 6.2e-15 87.4 370 25.7
MELO3C024862.2 Cucumis melo HOM05D006657 ORTHO05D005964 6.2e-15 87.4 293 30.4
HPP92_003258 Vanilla planifolia HOM05D006657 ORTHO05D005964 6.2e-15 87.4 625 23.7
BcaB01g00702 Brassica carinata HOM05D009821 ORTHO05D005964 8.2e-15 87.0 221 33.0
BcaB05g23119 Brassica carinata HOM05D009821 ORTHO05D005964 8.2e-15 87.0 308 27.9
AL5G29280 Arabidopsis lyrata HOM05D009821 ORTHO05D005964 1.4e-14 86.3 503 24.3
A06p18270 Brassica napus HOM05D009821 ORTHO05D005964 2.4e-14 85.5 225 31.1
BraA06t24910Z Brassica rapa HOM05D009821 ORTHO05D005964 2.4e-14 85.5 225 31.1
Sp5g12600 Schrenkiella parvula HOM05D009821 ORTHO05D005964 3.1e-14 85.1 461 27.1
Atru.chr9.1833 Acer truncatum HOM05D011672 ORTHO05D011012 4.0e-14 84.7 182 33.5
VMungo0540G2099 Vigna mungo HOM05D013241 ORTHO05D011012 6.9e-14 84.0 439 24.1
Gohir.D12G243700 Gossypium hirsutum HOM05D011672 ORTHO05D011012 1.3e-12 79.7 351 26.2
Psat1g195680 Pisum sativum HOM05D013241 ORTHO05D011012 3.8e-12 78.2 483 23.8
Atru.chr12.2480 Acer truncatum HOM05D006657 ORTHO05D005964 4.9e-12 77.8 281 31.3
unitig_0.g2439 Utricularia gibba HOM05D006657 ORTHO05D005964 8.4e-12 77.0 438 22.1
Gorai.008G261200 Gossypium raimondii HOM05D011672 ORTHO05D011012 1.4e-11 76.3 513 25.0
C01p30840 Brassica napus HOM05D009821 ORTHO05D005964 1.9e-11 75.9 341 28.2
CiPaw.06G039800 Carya illinoinensis HOM05D006657 ORTHO05D005964 1.9e-11 75.9 243 34.6
BcaC09g49952 Brassica carinata HOM05D009821 ORTHO05D005964 3.2e-11 75.1 261 31.8
BolC1t03016H Brassica oleracea HOM05D009821 ORTHO05D005964 3.2e-11 75.1 261 31.8
Eucgr.L00346 Eucalyptus grandis HOM05D013249 ORTHO05D011012 3.5e-10 71.6 761 23.4
Gohir.A12G242700 Gossypium hirsutum HOM05D011672 ORTHO05D011012 6.1e-10 70.9 499 24.0
Potri.002G230100 Populus trichocarpa HOM05D006657 ORTHO05D005964 1.1e-08 66.6 62 54.8
Potri.003G206701 Populus trichocarpa HOM05D006657 ORTHO05D005964 3.3e-08 65.1 61 54.1
Potri.004G080501 Populus trichocarpa HOM05D006657 ORTHO05D005964 1.6e-07 62.8 62 53.2
THA.LOC104803312 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 1.4e-06 59.7 75 41.3
Os10g0537300 Oryza sativa ssp. japonica HOM05D033058 ORTHO05D037190 9.0e-06 57.0 648 22.1


User provided reference genes

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