Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G0189 Trochodendron aralioides HOM05D000041 ORTHO05D414412 1.8e-57 225.7 114 100.0
TAR374G0738 Trochodendron aralioides HOM05D000041 ORTHO05D008933 1.3e-28 129.8 73 93.2
Dinv43845 Davidia involucrata HOM05D000041 ORTHO05D008933 2.1e-18 95.9 67 70.1
TAR636G1578 Trochodendron aralioides HOM05D000041 ORTHO05D008933 9.0e-17 90.5 67 67.2
Nn1g01620 Nelumbo nucifera HOM05D000310 ORTHO05D000509 1.5e-16 89.7 69 65.2
GSVIVG01026990001 Vitis vinifera HOM05D000041 ORTHO05D008933 3.4e-16 88.6 66 66.7
CSS0043142 Camellia sinensis var. sinensis HOM05D000041 ORTHO05D008933 1.3e-15 86.7 67 64.2
Haze_15543 Corylus avellana HOM05D000310 ORTHO05D000509 2.9e-15 85.5 66 60.6
CAN.G78.109 Capsicum annuum HOM05D000041 ORTHO05D008933 4.9e-15 84.7 70 54.3
PGSC0003DMG400000185 Solanum tuberosum HOM05D000041 ORTHO05D008933 4.9e-15 84.7 70 54.3
Oeu004900.1 Olea europaea HOM05D000041 ORTHO05D008933 6.4e-15 84.3 67 61.2
Solyc01g094920.3 Solanum lycopersicum HOM05D000041 ORTHO05D008933 6.4e-15 84.3 70 54.3
Sopen01g038700 Solanum pennellii HOM05D000041 ORTHO05D008933 6.4e-15 84.3 70 54.3
TWI59G0873 Tripterygium wilfordii HOM05D000041 ORTHO05D008933 1.9e-14 82.8 66 60.6
Eucgr.D02312 Eucalyptus grandis HOM05D000041 ORTHO05D008933 2.4e-14 82.4 66 63.6
PSO063G1741 Papaver somniferum HOM05D000041 ORTHO05D008933 2.4e-14 82.4 67 64.2
Duzib138G0001 Durio zibethinus HOM05D000041 ORTHO05D008933 4.2e-14 81.6 68 58.8
Nitab4.5_0001269g0080 Nicotiana tabacum HOM05D009415 ORTHO05D008933 4.2e-14 81.6 70 57.1
Nitab4.5_0012157g0010 Nicotiana tabacum HOM05D000041 ORTHO05D008933 5.4e-14 81.3 70 57.1
COL.COLO4_12749 Corchorus olitorius HOM05D000041 ORTHO05D008933 9.3e-14 80.5 68 58.8
Thecc.01G355400 Theobroma cacao HOM05D000041 ORTHO05D008933 9.3e-14 80.5 68 57.4
PSO170G2369 Papaver somniferum HOM05D000041 ORTHO05D008933 1.2e-13 80.1 67 62.7
QL04p054422 Quercus lobata HOM05D000041 ORTHO05D008933 1.2e-13 80.1 69 56.5
Peaxi162Scf00020g00107 Petunia axillaris HOM05D000041 ORTHO05D008933 2.7e-13 79.0 70 54.3
Nitab4.5_0001269g0020 Nicotiana tabacum HOM05D000041 ORTHO05D008933 1.0e-12 77.0 70 52.9
Hma1.2p1_0702F.1_g206140 Hydrangea macrophylla HOM05D000041 ORTHO05D008933 1.3e-12 76.6 66 59.1
Hma1.2p1_2235F.1_g317730 Hydrangea macrophylla HOM05D000041 ORTHO05D008933 1.3e-12 76.6 66 59.1
Potri.014G088100 Populus trichocarpa HOM05D000041 ORTHO05D008933 1.8e-12 76.3 66 57.6
Manes.05G031500 Manihot esculenta HOM05D000041 ORTHO05D008933 5.1e-12 74.7 67 53.7
Sabra14G0063900 Salix brachista HOM05D000041 ORTHO05D008933 5.1e-12 74.7 89 47.2
vmacro20910 Vaccinium macrocarpon HOM05D000041 ORTHO05D008933 5.1e-12 74.7 59 62.7
FAN03G3501 Fragaria x ananassa HOM05D000041 ORTHO05D008933 1.5e-11 73.2 69 52.2
Rhsim01G0164700 Rhododendron simsii HOM05D000041 ORTHO05D008933 1.5e-11 73.2 67 59.7
FvH4_7g14970 Fragaria vesca HOM05D000041 ORTHO05D008933 2.5e-11 72.4 66 54.5
FAN01G2680 Fragaria x ananassa HOM05D000041 ORTHO05D008933 2.5e-11 72.4 66 54.5
FAN06G1453 Fragaria x ananassa HOM05D000041 ORTHO05D008933 2.5e-11 72.4 66 54.5
FAN10G2066 Fragaria x ananassa HOM05D000041 ORTHO05D008933 2.5e-11 72.4 66 54.5
FAN10G3312 Fragaria x ananassa HOM05D000041 ORTHO05D008933 2.5e-11 72.4 66 54.5
Lj9P586T50 Lonicera japonica HOM05D000041 ORTHO05D008933 2.5e-11 72.4 66 54.5
RcHm_v2.0_Chr1g0357011 Rosa chinensis HOM05D000041 ORTHO05D008933 3.3e-11 72.0 66 54.5
Manes.01G254200 Manihot esculenta HOM05D000041 ORTHO05D008933 4.3e-11 71.6 69 50.7
Aqoxy5G04087 Aquilegia oxysepala HOM05D000041 ORTHO05D008933 5.6e-11 71.2 67 55.2
Cpa.g.sc11.42 Carica papaya HOM05D000041 ORTHO05D008933 9.6e-11 70.5 66 47.0
SalBow3G0423 Salvia bowleyana HOM05D000041 ORTHO05D008933 9.6e-11 70.5 60 58.3
CiPaw.01G064700 Carya illinoinensis HOM05D000041 ORTHO05D008933 1.6e-10 69.7 65 50.8
Ciclev10019040m.g Citrus clementina HOM05D000310 ORTHO05D000509 3.6e-10 68.6 66 50.0
Gohir.A11G091000 Gossypium hirsutum HOM05D000041 ORTHO05D008933 3.6e-10 68.6 65 52.3
arahy.Tifrunner.gnm1.ann1.3962T8 Arachis hypogaea HOM05D000041 ORTHO05D008933 6.2e-10 67.8 68 50.0
arahy.Tifrunner.gnm1.ann1.E9Z3FR Arachis hypogaea HOM05D000041 ORTHO05D008933 6.2e-10 67.8 68 50.0
Gorai.007G102000 Gossypium raimondii HOM05D000041 ORTHO05D008933 6.2e-10 67.8 65 52.3
MD01G1068300 Malus domestica HOM05D000310 ORTHO05D000509 6.2e-10 67.8 58 58.6
Gohir.A12G108000 Gossypium hirsutum HOM05D000041 ORTHO05D008933 8.1e-10 67.4 64 48.4
Gohir.D12G111200 Gossypium hirsutum HOM05D000041 ORTHO05D008933 8.1e-10 67.4 64 48.4
Prupe.2G174400 Prunus persica HOM05D000041 ORTHO05D008933 8.1e-10 67.4 58 55.2
Lalb_Chr03g0035521 Lupinus albus HOM05D000041 ORTHO05D008933 2.4e-09 65.9 66 50.0
CANSAT56G3806 Cannabis sativa HOM05D000041 ORTHO05D008933 3.1e-09 65.5 79 45.6
Migut.B01784 Erythranthe guttata HOM05D000041 ORTHO05D008933 5.3e-09 64.7 61 52.5
Gorai.008G120500 Gossypium raimondii HOM05D000041 ORTHO05D008933 6.9e-09 64.3 64 46.9
Phvul.008G060000 Phaseolus vulgaris HOM05D000041 ORTHO05D008933 6.9e-09 64.3 67 49.3
Lj1g0024790 Lotus japonicus HOM05D000041 ORTHO05D008933 1.2e-08 63.5 66 45.5
PGR031G1461 Punica granatum HOM05D000041 ORTHO05D008933 1.2e-08 63.5 58 51.7
EL10Ac1g00376 Beta vulgaris HOM05D000041 ORTHO05D008933 2.6e-08 62.4 67 50.7
DCAR_025205 Daucus carota HOM05D000041 ORTHO05D008933 2.6e-08 62.4 67 49.3
Sc26g0000840 Simmondsia chinensis HOM05D000041 ORTHO05D008933 2.6e-08 62.4 59 50.8
Glyma.09G256402 Glycine max HOM05D000041 ORTHO05D008933 3.4e-08 62.0 67 49.3
MBI11_g24761_MAGBIO Magnolia biondii HOM05D000041 ORTHO05D008933 3.4e-08 62.0 71 52.1
Ca_00825_v3 Cicer arietinum L. HOM05D000041 ORTHO05D008933 5.8e-08 61.2 66 47.0
Atru.chr5.536 Acer truncatum HOM05D000041 ORTHO05D008933 1.3e-07 60.1 67 47.8
Ah.05g180310 Amaranthus hybridus HOM05D000041 ORTHO05D008933 1.3e-07 60.1 67 44.8
VMungo1383G0468 Vigna mungo HOM05D000041 ORTHO05D008933 3.8e-07 58.5 67 46.3
Glyma.18G236000 Glycine max HOM05D000041 ORTHO05D008933 4.9e-07 58.2 67 46.3
AL1G10820 Arabidopsis lyrata HOM05D000041 ORTHO05D008933 8.4e-07 57.4 76 40.8
CARHR000780 Cardamine hirsuta HOM05D000041 ORTHO05D008933 8.4e-07 57.4 63 46.0
arahy.Tifrunner.gnm1.ann1.XG9Q6Z Arachis hypogaea HOM05D000041 ORTHO05D008933 1.1e-06 57.0 67 44.8
BraA02t07401Z Brassica rapa HOM05D000041 ORTHO05D008933 1.1e-06 57.0 68 45.6
AUR62022598 Chenopodium quinoa HOM05D000457 ORTHO05D008933 1.1e-06 57.0 67 47.8
Cc02_g38400 Coffea canephora HOM05D000041 ORTHO05D008933 1.1e-06 57.0 42 57.1
Lsat_1_v5_gn_3_137720 Lactuca sativa HOM05D000041 ORTHO05D008933 1.1e-06 57.0 95 44.2
SGA_v2.0_scaffold78G25418 Striga asiatica HOM05D000041 ORTHO05D008933 1.1e-06 57.0 85 38.8
arahy.Tifrunner.gnm1.ann1.740L49 Arachis hypogaea HOM05D000041 ORTHO05D008933 1.4e-06 56.6 67 44.8
BcaB01g02198 Brassica carinata HOM05D000041 ORTHO05D008933 1.4e-06 56.6 61 47.5
C02p37920 Brassica napus HOM05D000041 ORTHO05D008933 2.4e-06 55.8 68 44.1
BolC2t09809H Brassica oleracea HOM05D000041 ORTHO05D008933 2.4e-06 55.8 68 44.1
Prupe.4G188000 Prunus persica HOM05D000041 ORTHO05D000061 2.4e-06 55.8 98 37.8
A02p24060 Brassica napus HOM05D000041 ORTHO05D008933 3.2e-06 55.5 68 44.1
TPR.G2250 Trifolium pratense HOM05D000041 ORTHO05D008933 3.2e-06 55.5 67 46.3
AL6G53210 Arabidopsis lyrata HOM05D000310 ORTHO05D000509 4.2e-06 55.1 66 47.0
AT4G00300 Arabidopsis thaliana HOM05D000041 ORTHO05D008933 4.2e-06 55.1 66 47.0
Psat3g106760 Pisum sativum HOM05D000041 ORTHO05D008933 4.2e-06 55.1 67 46.3
Aa31LG5G660 Aethionema arabicum HOM05D000310 ORTHO05D000509 5.5e-06 54.7 60 46.7
BcaC03g16037 Brassica carinata HOM05D000041 ORTHO05D008933 5.5e-06 54.7 68 42.6
ClCG06G003490 Citrullus lanatus HOM05D000041 ORTHO05D008933 5.5e-06 54.7 69 47.8
THA.LOC104825853 Tarenaya hassleriana HOM05D000041 ORTHO05D008933 7.1e-06 54.3 93 35.5
Haze_25247 Corylus avellana HOM05D001835 ORTHO05D001899 9.3e-06 53.9 39 61.5
Thhalv10028441m.g Eutrema salsugineum HOM05D000310 ORTHO05D000509 9.3e-06 53.9 61 45.9
Nn2g12833 Nelumbo nucifera HOM05D000041 ORTHO05D000061 9.3e-06 53.9 72 43.1
Oeu012679.1 Olea europaea HOM05D000041 ORTHO05D000061 9.3e-06 53.9 75 44.0


User provided reference genes

Program Settings