Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G0165 Trochodendron aralioides HOM05D003568 ORTHO05D004104 1.3e-302 1042.3 562 100.0
GSVIVG01026964001 Vitis vinifera HOM05D003568 ORTHO05D004104 8.0e-284 979.9 558 94.1
Prupe.2G177200 Prunus persica HOM05D003568 ORTHO05D004104 4.8e-281 970.7 560 93.2
Nn1g01682 Nelumbo nucifera HOM05D003568 ORTHO05D004104 1.8e-280 968.8 561 93.2
QL04p055468 Quercus lobata HOM05D003568 ORTHO05D004104 2.4e-280 968.4 559 92.8
Potri.014G090100 Populus trichocarpa HOM05D003568 ORTHO05D004104 3.1e-280 968.0 560 93.2
Duzib205G0971 Durio zibethinus HOM05D003568 ORTHO05D004104 2.0e-279 965.3 560 92.7
CiPaw.02G034600 Carya illinoinensis HOM05D003568 ORTHO05D004104 2.7e-279 964.9 560 92.7
Gorai.008G297000 Gossypium raimondii HOM05D003568 ORTHO05D004104 2.7e-279 964.9 560 92.0
Gohir.D12G276500 Gossypium hirsutum HOM05D003568 ORTHO05D004104 7.7e-279 963.4 560 91.8
MELO3C006082.2 Cucumis melo HOM05D003568 ORTHO05D004104 1.0e-278 963.0 560 92.0
MD01G1071200 Malus domestica HOM05D003568 ORTHO05D004104 1.3e-278 962.6 560 92.3
Aqoxy2G00934 Aquilegia oxysepala HOM05D003568 ORTHO05D004104 2.2e-278 961.8 555 92.3
CANSAT56G2290 Cannabis sativa HOM05D003568 ORTHO05D004104 2.2e-278 961.8 560 92.7
Thecc.06G000300 Theobroma cacao HOM05D003568 ORTHO05D004104 2.2e-278 961.8 560 92.1
CSS0027239 Camellia sinensis var. sinensis HOM05D003568 ORTHO05D004104 3.8e-278 961.1 560 92.3
CsaV3_3G008620 Cucumis sativus L. HOM05D003568 ORTHO05D004104 3.8e-278 961.1 560 92.0
Potri.002G164100 Populus trichocarpa HOM05D003568 ORTHO05D004104 6.5e-278 960.3 554 93.3
Gohir.A12G275800 Gossypium hirsutum HOM05D003568 ORTHO05D004104 8.5e-278 959.9 560 91.4
PGR042G3260 Punica granatum HOM05D003568 ORTHO05D004104 1.1e-277 959.5 560 92.1
TWI59G1008 Tripterygium wilfordii HOM05D003568 ORTHO05D004104 1.9e-277 958.7 555 92.8
Duzib068G0821 Durio zibethinus HOM05D003568 ORTHO05D004104 3.2e-277 958.0 560 91.8
Manes.05G029701 Manihot esculenta HOM05D003568 ORTHO05D004104 3.2e-277 958.0 560 92.5
Ciclev10018853m.g Citrus clementina HOM05D003568 ORTHO05D004104 5.5e-277 957.2 560 91.6
ClCG05G001260 Citrullus lanatus HOM05D003568 ORTHO05D004104 1.2e-276 956.1 571 90.5
Sed0000810 Sechium edule HOM05D003568 ORTHO05D004104 3.6e-276 954.5 560 91.4
FAN03G0275 Fragaria x ananassa HOM05D003568 ORTHO05D004104 6.1e-276 953.7 560 91.2
RcHm_v2.0_Chr1g0357661 Rosa chinensis HOM05D003568 ORTHO05D004104 8.0e-276 953.4 560 91.1
FvH4_7g15330 Fragaria vesca HOM05D003568 ORTHO05D004104 1.4e-275 952.6 560 91.1
FAN06G0334 Fragaria x ananassa HOM05D003568 ORTHO05D004104 1.4e-275 952.6 560 91.1
PSO266G0033 Papaver somniferum HOM05D003568 ORTHO05D004104 3.0e-275 951.4 560 91.1
Thecc.03G000600 Theobroma cacao HOM05D003568 ORTHO05D004104 3.0e-275 951.4 560 91.4
FAN01G2394 Fragaria x ananassa HOM05D003568 ORTHO05D004104 5.2e-275 950.7 560 90.9
Eucgr.E00099 Eucalyptus grandis HOM05D003568 ORTHO05D004104 8.8e-275 949.9 560 90.5
Sabra14G0065400 Salix brachista HOM05D003568 ORTHO05D004104 8.8e-275 949.9 569 90.5
PSO478G3452 Papaver somniferum HOM05D003568 ORTHO05D004104 1.5e-274 949.1 560 90.9
Atru.chr5.579 Acer truncatum HOM05D003568 ORTHO05D004104 2.6e-274 948.3 555 91.5
FAN06G4614 Fragaria x ananassa HOM05D003568 ORTHO05D004104 2.6e-274 948.3 559 90.9
Manes.01G252500 Manihot esculenta HOM05D003568 ORTHO05D004104 3.4e-274 948.0 560 91.8
MD07G1131500 Malus domestica HOM05D003568 ORTHO05D004104 5.7e-274 947.2 560 91.2
Cpa.g.sc184.32 Carica papaya HOM05D003568 ORTHO05D004104 3.7e-273 944.5 555 92.1
vmacro13231 Vaccinium macrocarpon HOM05D003568 ORTHO05D004104 1.4e-272 942.6 572 87.4
FAN10G2647 Fragaria x ananassa HOM05D003568 ORTHO05D004104 5.4e-272 940.6 560 90.2
Atru.chr5.561 Acer truncatum HOM05D003568 ORTHO05D004104 2.3e-270 935.3 578 87.9
TAR375G0541 Trochodendron aralioides HOM05D003568 ORTHO05D004104 1.1e-269 932.9 565 89.9
Ca_23448_v3 Cicer arietinum L. HOM05D003568 ORTHO05D004104 4.2e-269 931.0 555 90.6
THA.LOC104811828 Tarenaya hassleriana HOM05D003568 ORTHO05D004104 4.2e-269 931.0 560 88.9
Medtr8g023330 Medicago truncatula HOM05D003568 ORTHO05D004104 5.5e-269 930.6 555 90.5
Sabra02G0147000 Salix brachista HOM05D003568 ORTHO05D004104 9.5e-269 929.9 601 83.2
Lj3g0009129 Lotus japonicus HOM05D003568 ORTHO05D004104 8.0e-268 926.8 555 90.6
Oeu015218.3 Olea europaea HOM05D003568 ORTHO05D004104 1.4e-267 926.0 560 89.5
Glyma.07G046100 Glycine max HOM05D003568 ORTHO05D004104 6.8e-267 923.7 555 88.8
SGA_v2.0_scaffold67G22717 Striga asiatica HOM05D003568 ORTHO05D004104 6.8e-267 923.7 560 88.8
COL.COLO4_15385 Corchorus olitorius HOM05D003568 ORTHO05D004104 2.6e-266 921.8 555 89.5
Lalb_Chr18g0044861 Lupinus albus HOM05D003568 ORTHO05D004104 3.4e-266 921.4 560 88.4
Sc03g0008850 Simmondsia chinensis HOM05D003568 ORTHO05D004104 1.1e-264 916.4 561 87.5
Cc08_g01740 Coffea canephora HOM05D003568 ORTHO05D004104 3.2e-264 914.8 560 88.2
Aa31LG3G14860 Aethionema arabicum HOM05D003568 ORTHO05D004104 5.4e-264 914.1 560 87.7
Phvul.010G123000 Phaseolus vulgaris HOM05D003568 ORTHO05D004104 2.0e-263 912.1 555 87.2
Nitab4.5_0000171g0380 Nicotiana tabacum HOM05D003568 ORTHO05D004104 2.7e-263 911.8 560 87.9
CSS0021365 Camellia sinensis var. sinensis HOM05D003568 ORTHO05D004104 3.5e-263 911.4 560 86.2
Peaxi162Scf00073g02118 Petunia axillaris HOM05D003568 ORTHO05D004104 5.9e-263 910.6 560 87.7
Sp6g31270 Schrenkiella parvula HOM05D003568 ORTHO05D004104 7.8e-263 910.2 560 87.1
CSS0044044 Camellia sinensis var. sinensis HOM05D003568 ORTHO05D004104 1.7e-262 909.1 560 86.1
VMungo0331G1030 Vigna mungo HOM05D003568 ORTHO05D004104 6.6e-262 907.1 555 87.2
Carub.0006s1087 Capsella rubella HOM05D003568 ORTHO05D004104 8.6e-262 906.7 560 86.4
CARHR200740 Cardamine hirsuta HOM05D003568 ORTHO05D004104 3.3e-261 904.8 560 86.2
Migut.N01148 Erythranthe guttata HOM05D003568 ORTHO05D004104 4.3e-261 904.4 555 88.1
EL10Ac5g12970 Beta vulgaris HOM05D003568 ORTHO05D004104 5.6e-261 904.0 555 86.3
Thhalv10012686m.g Eutrema salsugineum HOM05D003568 ORTHO05D004104 5.6e-261 904.0 560 86.4
Rhsim07G0010700 Rhododendron simsii HOM05D003568 ORTHO05D004104 7.3e-261 903.7 655 76.3
AL6G23170 Arabidopsis lyrata HOM05D003568 ORTHO05D004104 1.6e-260 902.5 560 86.4
A10p25450 Brassica napus HOM05D003568 ORTHO05D004104 1.8e-259 899.0 560 86.4
BolC9t59286H Brassica oleracea HOM05D003568 ORTHO05D004104 1.8e-259 899.0 568 85.7
BraA10t44609Z Brassica rapa HOM05D003568 ORTHO05D004104 1.8e-259 899.0 560 86.4
HanXRQChr04g0120781 Helianthus annuus HOM05D003568 ORTHO05D004104 1.8e-259 899.0 558 87.3
Sed0024683 Sechium edule HOM05D003568 ORTHO05D004104 1.8e-259 899.0 560 86.2
C09p64520 Brassica napus HOM05D003568 ORTHO05D004104 3.1e-259 898.3 568 85.7
CAN.G165.6 Capsicum annuum HOM05D003568 ORTHO05D004104 1.5e-258 896.0 560 86.8
MSTRG.27756 Avicennia marina HOM05D003568 ORTHO05D004104 5.8e-258 894.0 555 84.7
ECA236G4463 Erigeron canadensis HOM05D003568 ORTHO05D004104 3.7e-257 891.3 558 86.6
arahy.Tifrunner.gnm1.ann1.Z56S5U Arachis hypogaea HOM05D003568 ORTHO05D004104 4.9e-257 891.0 557 86.7
Glyma.16G014200 Glycine max HOM05D003568 ORTHO05D004104 1.1e-256 889.8 547 87.2
Sed0017270 Sechium edule HOM05D003568 ORTHO05D004104 1.1e-256 889.8 560 86.2
Solyc03g095410.3 Solanum lycopersicum HOM05D003568 ORTHO05D004104 1.1e-256 889.8 560 86.2
BcaB01g05405 Brassica carinata HOM05D003568 ORTHO05D004104 2.4e-256 888.6 560 85.4
C03p06540 Brassica napus HOM05D003568 ORTHO05D004104 2.4e-256 888.6 560 85.2
DCAR_006948 Daucus carota HOM05D003568 ORTHO05D004104 3.2e-256 888.3 558 85.8
PGSC0003DMG400005252 Solanum tuberosum HOM05D003568 ORTHO05D004104 4.1e-256 887.9 560 86.2
Gorai.006G064200 Gossypium raimondii HOM05D003568 ORTHO05D004104 9.2e-256 886.7 555 84.0
BolC3t13154H Brassica oleracea HOM05D003568 ORTHO05D004104 1.2e-255 886.3 560 85.0
AT5G12370 Arabidopsis thaliana HOM05D003568 ORTHO05D004104 4.6e-255 884.4 560 85.2
Gohir.D09G046200 Gossypium hirsutum HOM05D003568 ORTHO05D004104 1.0e-254 883.2 555 83.8
Sopen03g025390 Solanum pennellii HOM05D003568 ORTHO05D004104 1.0e-254 883.2 560 85.9
A03p05590 Brassica napus HOM05D003568 ORTHO05D004104 1.3e-254 882.9 560 85.0
BraA03t09896Z Brassica rapa HOM05D003568 ORTHO05D004104 1.3e-254 882.9 560 85.0
MBI03_g34513_MAGBIO Magnolia biondii HOM05D003568 ORTHO05D004104 1.5e-253 879.4 536 87.3
arahy.Tifrunner.gnm1.ann1.PRYL24 Arachis hypogaea HOM05D003568 ORTHO05D004104 7.3e-253 877.1 557 86.2
Lalb_Chr17g0343201 Lupinus albus HOM05D003568 ORTHO05D004104 3.6e-252 874.8 555 82.9
ATR0829G125 Amborella trichopoda HOM05D003568 ORTHO05D004104 4.7e-252 874.4 554 83.8
AUR62030738 Chenopodium quinoa HOM05D003568 ORTHO05D004104 8.0e-252 873.6 538 86.4
Haze_15562 Corylus avellana HOM05D003568 ORTHO05D004104 4.4e-250 867.8 654 75.1
Nn6g35074 Nelumbo nucifera HOM05D003568 ORTHO05D004104 2.2e-249 865.5 537 86.8
Hund23292 Selenicereus undatus HOM05D003568 ORTHO05D004104 3.2e-248 861.7 556 83.5
HPP92_003241 Vanilla planifolia HOM05D003568 ORTHO05D004104 4.1e-248 861.3 547 81.9
unitig_21.g20340 Utricularia gibba HOM05D003568 ORTHO05D004104 7.1e-248 860.5 560 81.8
AUR62036376 Chenopodium quinoa HOM05D003568 ORTHO05D004104 3.0e-246 855.1 548 83.9
CDE07G1174 Ceratophyllum demersum HOM05D003568 ORTHO05D004104 9.5e-245 850.1 535 84.5
TPR.G21815 Trifolium pratense HOM05D003568 ORTHO05D004104 7.6e-242 840.5 555 83.4
Lj9A588G62 Lonicera japonica HOM05D003568 ORTHO05D004104 1.4e-240 836.3 560 81.2
Os12g0238100 Oryza sativa ssp. japonica HOM05D003568 ORTHO05D004104 9.2e-240 833.6 555 76.0
SEGI_32899 Sequoiadendron giganteum HOM05D003568 ORTHO05D004104 1.2e-239 833.2 554 80.3
Zm00001eb133590 Zea mays HOM05D003568 ORTHO05D004104 1.2e-239 833.2 553 76.7
Dinv27398 Davidia involucrata HOM05D003568 ORTHO05D004104 1.2e-234 816.6 472 93.4
Lj7A507T47 Lonicera japonica HOM05D003568 ORTHO05D004104 7.8e-231 803.9 584 76.7
SalBow6G0922 Salvia bowleyana HOM05D003568 ORTHO05D004104 2.8e-228 795.4 559 74.8
SalBow6G4826 Salvia bowleyana HOM05D003568 ORTHO05D004104 2.8e-228 795.4 559 74.8
Lsat_1_v5_gn_7_3960 Lactuca sativa HOM05D003568 ORTHO05D004104 1.1e-224 783.5 558 78.5
Sopen11g021810 Solanum pennellii HOM05D003568 ORTHO05D004104 7.1e-224 780.8 550 75.8
Nitab4.5_0010629g0020 Nicotiana tabacum HOM05D003568 ORTHO05D004104 3.9e-222 775.0 548 77.2
Peaxi162Scf00154g00427 Petunia axillaris HOM05D003568 ORTHO05D004104 7.3e-221 770.8 587 72.1
Psat4g164920 Pisum sativum HOM05D003568 ORTHO05D004104 6.9e-219 764.2 555 78.0
Hund02118 Selenicereus undatus HOM05D003568 ORTHO05D004104 6.9e-219 764.2 533 78.2
ECA238G2843 Erigeron canadensis HOM05D003568 ORTHO05D004104 1.1e-213 746.9 555 73.2
Lsat_1_v5_gn_3_138540 Lactuca sativa HOM05D003568 ORTHO05D004104 5.5e-208 728.0 555 69.4
HanXRQChr02g0038861 Helianthus annuus HOM05D003568 ORTHO05D004104 1.6e-207 726.5 555 70.3
HanXRQChr13g0415591 Helianthus annuus HOM05D003568 ORTHO05D004104 5.1e-206 721.5 555 69.7
AagrBONN_evm.TU.Sc2ySwM_117.807 Anthoceros agrestis HOM05D003568 ORTHO05D004104 9.0e-203 710.7 555 68.6
Gohir.A09G045200 Gossypium hirsutum HOM05D003568 ORTHO05D004104 4.3e-197 691.8 453 81.9
Sopen10g009070 Solanum pennellii HOM05D003568 ORTHO05D004104 1.3e-196 690.3 548 72.3
Mapoly0070s0084 Marchantia polymorpha HOM05D003568 ORTHO05D004104 8.2e-196 687.6 561 66.8
Oeu036591.1 Olea europaea HOM05D003568 ORTHO05D004104 4.1e-195 685.3 560 69.8
CAN.G45.13 Capsicum annuum HOM05D003568 ORTHO05D004104 4.5e-194 681.8 473 80.1
FAN10G2437 Fragaria x ananassa HOM05D003568 ORTHO05D004104 2.2e-188 662.9 518 72.0
SMO329G0014 Selaginella moellendorffii HOM05D003568 ORTHO05D004104 4.1e-187 658.7 566 62.9
Nitab4.5_0006926g0010 Nicotiana tabacum HOM05D003568 ORTHO05D004104 2.5e-184 649.4 399 89.0
Solyc11g050710.2 Solanum lycopersicum HOM05D003568 ORTHO05D004104 4.2e-184 648.7 502 72.9
COL.COLO4_22311 Corchorus olitorius HOM05D003568 ORTHO05D004104 1.6e-167 593.6 394 82.2
Sopen10g009060 Solanum pennellii HOM05D003568 ORTHO05D004104 9.8e-165 584.3 521 65.3
Sopen10g009080 Solanum pennellii HOM05D003568 ORTHO05D004104 2.0e-162 576.6 568 60.6
Sopen10g009040 Solanum pennellii HOM05D003568 ORTHO05D004104 3.0e-158 562.8 546 61.2
CBR_g38471 Chara braunii HOM05D003568 ORTHO05D004104 2.5e-152 543.1 617 52.5
Dinv09575 Davidia involucrata HOM05D003568 ORTHO05D004104 7.0e-147 525.0 307 88.9
Solyc10g019110.2 Solanum lycopersicum HOM05D003568 ORTHO05D004104 1.7e-140 503.8 437 64.8
Pp3c17_2120 Physcomitrium patens HOM05D003568 ORTHO05D004104 1.9e-139 500.4 553 51.9
Pp3c7_5960 Physcomitrium patens HOM05D003568 ORTHO05D004104 1.3e-137 494.2 431 64.5
PSO478G4032 Papaver somniferum HOM05D003568 ORTHO05D004104 2.8e-127 459.9 433 62.1
AagrBONN_evm.TU.Sc2ySwM_362.1439 Anthoceros agrestis HOM05D003568 ORTHO05D004104 1.4e-126 457.6 559 47.8
Dinv09574 Davidia involucrata HOM05D003568 ORTHO05D004104 6.2e-111 405.6 251 86.1
Sopen00g003310 Solanum pennellii HOM05D003568 ORTHO05D004104 1.9e-107 394.0 547 48.6
Nitab4.5_0004323g0080 Nicotiana tabacum HOM05D003568 ORTHO05D004104 5.6e-104 382.5 270 74.8
Pp3c10_23750 Physcomitrium patens HOM05D003568 ORTHO05D004104 2.1e-103 380.6 566 41.2
Solyc10g019140.1 Solanum lycopersicum HOM05D003568 ORTHO05D004104 1.1e-102 378.3 295 69.5
CAN.G77.8 Capsicum annuum HOM05D003568 ORTHO05D004104 1.4e-94 351.3 291 73.2
Sopen00g004930 Solanum pennellii HOM05D003568 ORTHO05D004104 9.0e-94 348.6 366 57.1
Ah.12g059250 Amaranthus hybridus HOM05D003568 ORTHO05D004104 1.7e-84 317.8 280 65.0
Hma1.2p1_0335F.1_g128910 Hydrangea macrophylla HOM05D003568 ORTHO05D004104 5.1e-73 279.6 156 92.3
Psat3g201360 Pisum sativum HOM05D003568 ORTHO05D004104 2.8e-55 220.7 184 75.0
Solyc10g019130.3 Solanum lycopersicum HOM05D003568 ORTHO05D004104 5.9e-45 186.4 127 79.5
Oeu015217.1 Olea europaea HOM05D003568 ORTHO05D004104 2.7e-37 161.0 88 92.0
Ah.12g059260 Amaranthus hybridus HOM05D003568 ORTHO05D004104 2.8e-34 151.0 82 89.0
CDE06G2354 Ceratophyllum demersum HOM05D003568 ORTHO05D004104 2.8e-34 151.0 109 71.6
SEGI_22298 Sequoiadendron giganteum HOM05D003568 ORTHO05D004104 5.2e-33 146.7 86 81.4
Glyma.07G162100 Glycine max HOM05D003568 ORTHO05D004104 2.9e-31 141.0 83 84.3
PRCOL_00002354 Prasinoderma coloniale HOM05D003568 ORTHO05D004104 5.0e-28 130.2 625 25.6
RcHm_v2.0_Chr1g0375581 Rosa chinensis HOM05D003568 ORTHO05D004104 2.8e-26 124.4 94 72.3
VMungo1383G1077 Vigna mungo HOM05D003568 ORTHO05D004104 2.2e-23 114.8 82 72.0
Solyc10g019100.2 Solanum lycopersicum HOM05D003568 ORTHO05D004104 2.0e-21 108.2 62 85.5
Cre12.g551801 Chlamydomonas reinhardtii HOM05D003568 ORTHO05D004104 1.8e-17 95.1 209 28.2
RcHm_v2.0_Chr1g0375651 Rosa chinensis HOM05D003568 ORTHO05D004104 4.6e-13 80.5 108 49.1
RcHm_v2.0_Chr1g0375601 Rosa chinensis HOM05D003568 ORTHO05D004104 2.3e-09 68.2 56 67.9
MCO10G270 Micromonas commoda HOM05D003568 ORTHO05D004104 2.6e-08 64.7 122 35.2
Rhsim09G0102900 Rhododendron simsii HOM05D001968 ORTHO05D001940 6.4e-07 60.1 40 80.0


User provided reference genes

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