Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G0019 Trochodendron aralioides HOM05D004282 ORTHO05D006804 0.0e+00 1094.3 535 100.0
TAR375G0364 Trochodendron aralioides HOM05D004282 ORTHO05D006804 2.3e-301 1038.1 535 95.0
Nn6g33428 Nelumbo nucifera HOM05D004282 ORTHO05D006804 1.1e-290 1002.7 535 90.8
Aqoxy7G00313 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 9.6e-287 989.6 535 89.3
Dinv37635 Davidia involucrata HOM05D004282 ORTHO05D006804 1.3e-286 989.2 535 88.6
Aqoxy2G03117 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 2.8e-286 988.0 536 90.3
Actinidia02002 Actinidia chinensis HOM05D004282 ORTHO05D006804 1.6e-281 972.2 535 87.1
Rhsim02G0231700 Rhododendron simsii HOM05D004282 ORTHO05D006804 3.5e-281 971.1 536 87.9
QL12p032840 Quercus lobata HOM05D004282 ORTHO05D006804 1.0e-280 969.5 534 87.3
MD14G1105600 Malus domestica HOM05D004282 ORTHO05D006804 1.7e-280 968.8 535 86.5
Thecc.03G279500 Theobroma cacao HOM05D004282 ORTHO05D006804 5.1e-280 967.2 535 85.6
COL.COLO4_34472 Corchorus olitorius HOM05D004282 ORTHO05D006804 6.6e-280 966.8 535 86.0
CiPaw.11G134600 Carya illinoinensis HOM05D004282 ORTHO05D006804 1.5e-279 965.7 537 87.5
MD06G1084500 Malus domestica HOM05D004282 ORTHO05D006804 1.5e-279 965.7 535 86.2
Prupe.5G100800 Prunus persica HOM05D004282 ORTHO05D006804 1.9e-279 965.3 535 86.5
Duzib068G0684 Durio zibethinus HOM05D004282 ORTHO05D006804 7.4e-279 963.4 535 85.4
Cfa012224 Carpinus fangiana HOM05D004282 ORTHO05D006804 9.6e-279 963.0 537 87.5
Duzib084G1154 Durio zibethinus HOM05D004282 ORTHO05D006804 6.2e-278 960.3 535 85.6
CSS0007959 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 1.8e-277 958.7 535 86.4
CSS0014359 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 1.8e-277 958.7 535 86.4
DCAR_006738 Daucus carota HOM05D004282 ORTHO05D006804 5.3e-277 957.2 535 86.5
DCAR_006739 Daucus carota HOM05D004282 ORTHO05D006804 5.3e-277 957.2 535 86.5
PGR042G2758 Punica granatum HOM05D004282 ORTHO05D006804 6.9e-277 956.8 535 85.0
Manes.02G019600 Manihot esculenta HOM05D004282 ORTHO05D006804 9.0e-277 956.4 535 85.4
ClCG01G002660 Citrullus lanatus HOM05D004282 ORTHO05D006804 1.2e-276 956.1 535 84.9
Hma1.2p1_0209F.1_g088780 Hydrangea macrophylla HOM05D004282 ORTHO05D006804 2.0e-276 955.3 534 86.3
MELO3C005680.2 Cucumis melo HOM05D004282 ORTHO05D006804 9.9e-276 953.0 535 85.0
Lj8A221T67 Lonicera japonica HOM05D004282 ORTHO05D006804 1.7e-275 952.2 536 85.8
CsaV3_5G002770 Cucumis sativus L. HOM05D004282 ORTHO05D006804 2.2e-275 951.8 535 84.9
Sc01g0009620 Simmondsia chinensis HOM05D004282 ORTHO05D006804 2.2e-275 951.8 535 85.0
Hund14799 Selenicereus undatus HOM05D004282 ORTHO05D006804 3.8e-275 951.0 540 84.8
RcHm_v2.0_Chr7g0219471 Rosa chinensis HOM05D004282 ORTHO05D006804 1.4e-274 949.1 535 84.5
Sed0021454 Sechium edule HOM05D004282 ORTHO05D006804 3.5e-273 944.5 535 84.1
Manes.08G013300 Manihot esculenta HOM05D004282 ORTHO05D006804 4.6e-273 944.1 529 85.3
Gohir.D08G201400 Gossypium hirsutum HOM05D004282 ORTHO05D006804 6.0e-273 943.7 535 83.6
FAN08G1277 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.0e-272 943.0 535 83.6
FvH4_5g27720 Fragaria vesca HOM05D004282 ORTHO05D006804 1.3e-272 942.6 535 83.4
FAN13G2512 Fragaria x ananassa HOM05D004282 ORTHO05D006804 3.0e-272 941.4 535 83.2
DCAR_008399 Daucus carota HOM05D004282 ORTHO05D006804 8.7e-272 939.9 536 85.8
FAN04G0421 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.9e-271 938.7 535 83.2
FAN18G3468 Fragaria x ananassa HOM05D004282 ORTHO05D006804 7.4e-271 936.8 542 82.5
Gorai.003G158400 Gossypium raimondii HOM05D004282 ORTHO05D006804 7.4e-271 936.8 535 83.0
Potri.003G128200 Populus trichocarpa HOM05D004282 ORTHO05D006804 7.4e-271 936.8 535 82.8
TPR.G12833 Trifolium pratense HOM05D004282 ORTHO05D006804 1.6e-270 935.6 535 83.2
Gohir.A03G016700 Gossypium hirsutum HOM05D004282 ORTHO05D006804 3.7e-270 934.5 535 82.8
arahy.Tifrunner.gnm1.ann1.G1AAHV Arachis hypogaea HOM05D004282 ORTHO05D006804 4.8e-270 934.1 535 83.6
Eucgr.E00626 Eucalyptus grandis HOM05D004282 ORTHO05D006804 6.2e-270 933.7 535 83.6
PSO782G4766 Papaver somniferum HOM05D004282 ORTHO05D006804 6.2e-270 933.7 536 84.5
HanXRQChr13g0394231 Helianthus annuus HOM05D004282 ORTHO05D006804 1.1e-269 932.9 536 83.0
Gohir.D03G151200 Gossypium hirsutum HOM05D004282 ORTHO05D006804 1.8e-269 932.2 535 82.4
Ciclev10019676m.g Citrus clementina HOM05D004282 ORTHO05D006804 2.4e-269 931.8 529 83.9
Ca_17527_v3 Cicer arietinum L. HOM05D004282 ORTHO05D006804 3.1e-269 931.4 535 83.0
TWI81G0763 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 3.1e-269 931.4 535 82.8
arahy.Tifrunner.gnm1.ann1.4VFV1G Arachis hypogaea HOM05D004282 ORTHO05D006804 4.0e-269 931.0 535 83.2
Lsat_1_v5_gn_3_6581 Lactuca sativa HOM05D004282 ORTHO05D006804 5.3e-269 930.6 536 83.4
PSO478G3502 Papaver somniferum HOM05D004282 ORTHO05D006804 5.3e-269 930.6 536 84.0
Lalb_Chr05g0224721 Lupinus albus HOM05D004282 ORTHO05D006804 1.5e-268 929.1 535 82.6
VMungo0251G3615 Vigna mungo HOM05D004282 ORTHO05D006804 2.0e-268 928.7 535 82.8
Glyma.05G208400 Glycine max HOM05D004282 ORTHO05D006804 4.5e-268 927.5 535 82.6
Sopen08g029450 Solanum pennellii HOM05D004282 ORTHO05D006804 1.0e-267 926.4 537 82.3
Atru.chr9.2181 Acer truncatum HOM05D004282 ORTHO05D006804 1.3e-267 926.0 529 82.4
Sabra03G0091200 Salix brachista HOM05D004282 ORTHO05D006804 3.8e-267 924.5 535 81.9
Medtr8g098325 Medicago truncatula HOM05D004282 ORTHO05D006804 8.4e-267 923.3 535 81.9
PGSC0003DMG400012205 Solanum tuberosum HOM05D004282 ORTHO05D006804 8.4e-267 923.3 537 81.9
Oeu019186.1 Olea europaea HOM05D004282 ORTHO05D006804 1.9e-266 922.2 535 81.3
Solyc08g081150.4 Solanum lycopersicum HOM05D004282 ORTHO05D006804 1.9e-266 922.2 537 81.9
Phvul.002G290100 Phaseolus vulgaris HOM05D004282 ORTHO05D006804 2.5e-266 921.8 535 82.4
Lj4g0008271 Lotus japonicus HOM05D004282 ORTHO05D006804 9.3e-266 919.8 535 82.2
TWI60G0060 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 1.6e-265 919.1 535 81.9
Psat7g032640 Pisum sativum HOM05D004282 ORTHO05D006804 2.7e-265 918.3 535 81.5
ECA246G1826 Erigeron canadensis HOM05D004282 ORTHO05D006804 1.3e-264 916.0 537 80.4
Gorai.004G212300 Gossypium raimondii HOM05D004282 ORTHO05D006804 1.8e-264 915.6 535 81.9
Lsat_1_v5_gn_6_6601 Lactuca sativa HOM05D004282 ORTHO05D006804 3.0e-264 914.8 536 82.5
Cc08_g14800 Coffea canephora HOM05D004282 ORTHO05D006804 5.1e-264 914.1 535 81.5
Migut.A00734 Erythranthe guttata HOM05D004282 ORTHO05D006804 5.1e-264 914.1 535 80.9
HanXRQChr06g0165861 Helianthus annuus HOM05D004282 ORTHO05D006804 5.1e-264 914.1 534 81.5
EL10Ac2g04411 Beta vulgaris HOM05D004282 ORTHO05D006804 1.5e-263 912.5 536 81.5
CAN.G774.52 Capsicum annuum HOM05D004282 ORTHO05D006804 2.5e-263 911.8 538 81.2
CANSAT21G1770 Cannabis sativa HOM05D004282 ORTHO05D006804 1.6e-262 909.1 535 80.9
AUR62009455 Chenopodium quinoa HOM05D004282 ORTHO05D006804 1.6e-262 909.1 536 82.1
SGA_v2.0_scaffold173G39175 Striga asiatica HOM05D004282 ORTHO05D006804 2.8e-262 908.3 536 81.2
MSTRG.11981 Avicennia marina HOM05D004282 ORTHO05D006804 4.8e-262 907.5 535 80.4
Sp2g01000 Schrenkiella parvula HOM05D004282 ORTHO05D006804 8.2e-262 906.7 535 81.5
AUR62023137 Chenopodium quinoa HOM05D004282 ORTHO05D006804 1.4e-261 906.0 536 81.7
Ah.10g038320 Amaranthus hybridus HOM05D004282 ORTHO05D006804 1.8e-261 905.6 536 81.9
Peaxi162Scf00119g00947 Petunia axillaris HOM05D004282 ORTHO05D006804 2.4e-261 905.2 531 81.9
vmacro11363 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 4.1e-261 904.4 682 68.8
CARHR047680 Cardamine hirsuta HOM05D004282 ORTHO05D006804 1.5e-260 902.5 535 80.9
THA.LOC104809396 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 1.5e-260 902.5 527 81.2
Thhalv10023408m.g Eutrema salsugineum HOM05D004282 ORTHO05D006804 5.9e-260 900.6 535 80.7
THA.LOC104817993 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 2.2e-259 898.7 531 80.6
AL2G11570 Arabidopsis lyrata HOM05D004282 ORTHO05D006804 3.8e-259 897.9 535 80.6
AT1G63660 Arabidopsis thaliana HOM05D004282 ORTHO05D006804 1.1e-258 896.3 535 80.6
Nitab4.5_0001615g0080 Nicotiana tabacum HOM05D004282 ORTHO05D006804 7.2e-258 893.6 558 78.7
C09p18660 Brassica napus HOM05D004282 ORTHO05D006804 1.2e-257 892.9 536 80.2
Carub.0002s0119 Capsella rubella HOM05D004282 ORTHO05D006804 1.2e-257 892.9 535 80.0
unitig_578.g16628 Utricularia gibba HOM05D004282 ORTHO05D006804 6.1e-257 890.6 530 80.0
SHI07141 Sapria himalayana HOM05D004282 ORTHO05D006804 7.9e-257 890.2 529 79.2
Nitab4.5_0000678g0110 Nicotiana tabacum HOM05D004282 ORTHO05D006804 3.0e-256 888.3 558 78.1
MBI17_g24637_MAGBIO Magnolia biondii HOM05D004282 ORTHO05D006804 5.1e-256 887.5 529 81.3
ECA233G0272 Erigeron canadensis HOM05D004282 ORTHO05D006804 1.9e-255 885.6 530 80.4
Os08g0326600 Oryza sativa ssp. japonica HOM05D004282 ORTHO05D006804 1.3e-254 882.9 528 78.4
BolC9t54762H Brassica oleracea HOM05D004282 ORTHO05D006804 8.2e-254 880.2 536 79.7
A09p15390 Brassica napus HOM05D004282 ORTHO05D006804 1.1e-253 879.8 535 79.3
BraA09t37181Z Brassica rapa HOM05D004282 ORTHO05D006804 1.4e-253 879.4 535 79.3
Aa31LG2G870 Aethionema arabicum HOM05D004282 ORTHO05D006804 4.1e-253 877.9 535 78.1
GSVIVG01019748001 Vitis vinifera HOM05D004282 ORTHO05D006804 1.5e-252 875.9 535 80.9
Haze_08786 Corylus avellana HOM05D004282 ORTHO05D006804 5.0e-251 870.9 496 85.7
vmacro22817 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 8.5e-251 870.2 666 68.3
Zm00001eb434370 Zea mays HOM05D004282 ORTHO05D006804 4.2e-250 867.8 528 77.7
Gohir.A08G182900 Gossypium hirsutum HOM05D004282 ORTHO05D006804 1.3e-246 856.3 493 83.2
Glyma.08G015000 Glycine max HOM05D004282 ORTHO05D006804 1.0e-243 846.7 494 82.2
ATR1101G056 Amborella trichopoda HOM05D004282 ORTHO05D006804 2.3e-240 835.5 553 74.1
Oeu009150.1 Olea europaea HOM05D004282 ORTHO05D006804 1.1e-239 833.2 539 74.6
AagrBONN_evm.TU.Sc2ySwM_344.3490 Anthoceros agrestis HOM05D004282 ORTHO05D006804 4.1e-229 798.1 527 71.0
Mapoly0002s0326 Marchantia polymorpha HOM05D004282 ORTHO05D006804 7.0e-229 797.3 530 71.1
Pp3c8_7320 Physcomitrium patens HOM05D004282 ORTHO05D006804 2.9e-227 792.0 532 70.3
Lj2A0T39 Lonicera japonica HOM05D004282 ORTHO05D006804 9.1e-221 770.4 536 73.1
CBR_g48399 Chara braunii HOM05D004282 ORTHO05D006804 2.7e-220 768.8 526 70.3
SMO116G0368 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 2.3e-216 755.7 535 66.4
Lj2A185G23 Lonicera japonica HOM05D004282 ORTHO05D006804 4.4e-215 751.5 441 83.4
CDE06G0245 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 2.3e-211 739.2 404 85.9
MCO08G312 Micromonas commoda HOM05D004282 ORTHO05D006804 1.0e-208 730.3 525 65.3
Cre02.g092900 Chlamydomonas reinhardtii HOM05D004282 ORTHO05D006804 6.6e-203 711.1 527 64.3
HPP92_014989 Vanilla planifolia HOM05D004282 ORTHO05D006804 2.9e-198 695.7 497 67.8
PRCOL_00000667 Prasinoderma coloniale HOM05D004282 ORTHO05D006804 1.2e-196 690.3 525 63.4
BcaNung07334 Brassica carinata HOM05D004282 ORTHO05D006804 1.7e-190 669.8 374 84.5
CDE06G1269 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 6.4e-190 667.9 495 70.3
CiPaw.12G092600 Carya illinoinensis HOM05D004282 ORTHO05D006804 5.2e-176 621.7 422 73.5
Sabra01G0078200 Salix brachista HOM05D004282 ORTHO05D006804 3.1e-160 569.3 710 48.7
Cpa.g.c40776 Carica papaya HOM05D004282 ORTHO05D006804 3.6e-140 502.7 299 80.3
Cfa023610 Carpinus fangiana HOM05D004282 ORTHO05D006804 3.6e-140 502.7 536 51.9
SEGI_10668 Sequoiadendron giganteum HOM05D004282 ORTHO05D006804 6.3e-129 465.3 313 72.8
SMO165G0029 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 1.8e-120 437.2 537 47.1
CDE02G0075 Ceratophyllum demersum HOM05D004282 ORTHO05D021217 2.2e-105 387.1 262 72.9
Pp3c3_31480 Physcomitrium patens HOM05D004282 ORTHO05D006804 6.3e-105 385.6 411 50.4
Cpa.g.sc74.54 Carica papaya HOM05D004282 ORTHO05D022242 2.4e-80 303.9 184 77.7
Actinidia14566 Actinidia chinensis HOM05D004282 ORTHO05D017169 1.6e-71 274.6 148 89.9
ECA233G3991 Erigeron canadensis HOM05D004282 ORTHO05D006804 1.5e-58 231.5 148 71.6
CDE02G2749 Ceratophyllum demersum HOM05D004282 ORTHO05D022242 1.1e-48 198.7 140 68.6
ATR0680G380 Amborella trichopoda HOM05D004282 ORTHO05D006804 5.1e-46 189.9 221 48.4
GSVIVG01010145001 Vitis vinifera HOM05D004282 ORTHO05D021217 1.5e-37 161.8 89 85.4
QL09p052209 Quercus lobata HOM05D004282 ORTHO05D022242 4.3e-37 160.2 104 73.1
CANSAT64G0187 Cannabis sativa HOM05D004282 ORTHO05D006804 1.3e-33 148.7 110 68.2
ATR0680G421 Amborella trichopoda HOM05D004282 ORTHO05D021217 4.9e-33 146.7 93 77.4
TAR633G2043 Trochodendron aralioides HOM05D004282 ORTHO05D006540 8.2e-28 129.4 89 77.5
TAR633G2425 Trochodendron aralioides HOM05D004282 ORTHO05D022242 4.1e-27 127.1 97 74.2
Cc06_g21260 Coffea canephora HOM05D004282 ORTHO05D017169 5.0e-17 93.6 46 93.5
RcHm_v2.0_Chr1g0356411 Rosa chinensis HOM05D004282 ORTHO05D341678 6.7e-14 83.2 58 72.4
Dinv38937 Davidia involucrata HOM05D000151 ORTHO05D000074 4.4e-13 80.5 45 86.7
VMungo0464G0647 Vigna mungo HOM05D004282 ORTHO05D021217 1.7e-12 78.6 44 86.4
VMungo0540G0566 Vigna mungo HOM05D004282 ORTHO05D021217 1.7e-12 78.6 44 86.4
RcHm_v2.0_Chr7g0219111 Rosa chinensis HOM05D004282 ORTHO05D022242 1.0e-09 69.3 83 54.2
A09p35740 Brassica napus HOM05D004282 ORTHO05D017169 3.8e-09 67.4 40 80.0
A09p59280 Brassica napus HOM05D004282 ORTHO05D017169 3.8e-09 67.4 40 80.0
BraA09t41310Z Brassica rapa HOM05D004282 ORTHO05D017169 3.8e-09 67.4 40 80.0
RcHm_v2.0_Chr1g0321151 Rosa chinensis HOM05D004282 ORTHO05D022242 3.8e-09 67.4 48 70.8
A03p47680 Brassica napus HOM05D004282 ORTHO05D017169 4.7e-07 60.5 37 78.4
BraA09t37854Z Brassica rapa HOM05D004282 ORTHO05D017169 4.7e-07 60.5 37 78.4
SGA_v2.0_scaffold43G16453 Striga asiatica HOM05D004282 ORTHO05D404191 1.0e-06 59.3 41 68.3
PGR042G1447 Punica granatum HOM05D001661 ORTHO05D001575 8.8e-06 56.2 109 28.4


User provided reference genes

Program Settings