Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G0013 Trochodendron aralioides HOM05D003744 ORTHO05D004327 3.2e-217 758.1 367 100.0
TAR374G0876 Trochodendron aralioides HOM05D003744 ORTHO05D004327 1.1e-34 151.8 80 88.8
Aqoxy1G00571 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.7e-32 144.4 81 80.2
Atru.chr11.479 Acer truncatum HOM05D003744 ORTHO05D004327 1.4e-31 141.4 81 80.2
Ciclev10031746m.g Citrus clementina HOM05D003744 ORTHO05D004327 1.4e-31 141.4 81 81.5
PGSC0003DMG400024499 Solanum tuberosum HOM05D003744 ORTHO05D004327 1.4e-31 141.4 81 80.2
CAN.G781.16 Capsicum annuum HOM05D003744 ORTHO05D004327 1.9e-31 141.0 81 80.2
Nitab4.5_0005862g0050 Nicotiana tabacum HOM05D003744 ORTHO05D004327 1.9e-31 141.0 81 80.2
CiPaw.05G168300 Carya illinoinensis HOM05D003744 ORTHO05D004327 2.4e-31 140.6 81 80.2
Nitab4.5_0000852g0010 Nicotiana tabacum HOM05D003744 ORTHO05D004327 2.4e-31 140.6 81 79.0
Solyc03g114300.4 Solanum lycopersicum HOM05D003744 ORTHO05D004327 2.4e-31 140.6 91 72.5
Nn2g14543 Nelumbo nucifera HOM05D003744 ORTHO05D004327 5.4e-31 139.4 81 76.5
Dinv17603 Davidia involucrata HOM05D003744 ORTHO05D004327 1.2e-30 138.3 81 77.8
Cpa.g.sc5.31 Carica papaya HOM05D003744 ORTHO05D004327 1.6e-30 137.9 80 78.8
Gohir.D12G138100 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.6e-30 137.9 81 77.8
Gorai.008G149600 Gossypium raimondii HOM05D003744 ORTHO05D004327 1.6e-30 137.9 81 77.8
GSVIVG01012037001 Vitis vinifera HOM05D003744 ORTHO05D004327 1.6e-30 137.9 81 79.0
PSO384G3023 Papaver somniferum HOM05D003744 ORTHO05D004327 2.1e-30 137.5 81 79.0
Prupe.1G346400 Prunus persica HOM05D003744 ORTHO05D004327 3.5e-30 136.7 81 76.5
Sabra05G0077500 Salix brachista HOM05D003744 ORTHO05D004327 3.5e-30 136.7 81 79.0
Cfa008732 Carpinus fangiana HOM05D003744 ORTHO05D004327 4.6e-30 136.3 81 80.2
Lj8A264T57 Lonicera japonica HOM05D003744 ORTHO05D004327 4.6e-30 136.3 81 77.8
MD15G1355200 Malus domestica HOM05D003744 ORTHO05D004327 6.0e-30 136.0 81 76.5
COL.COLO4_10100 Corchorus olitorius HOM05D003744 ORTHO05D004327 7.8e-30 135.6 81 76.5
Manes.01G040712 Manihot esculenta HOM05D003744 ORTHO05D004327 7.8e-30 135.6 81 76.5
RcHm_v2.0_Chr5g0044851 Rosa chinensis HOM05D003744 ORTHO05D004327 7.8e-30 135.6 81 76.5
Gohir.A12G134500 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.0e-29 135.2 81 75.3
PGR044G0777 Punica granatum HOM05D003744 ORTHO05D004327 1.0e-29 135.2 81 79.0
arahy.Tifrunner.gnm1.ann1.DDPE54 Arachis hypogaea HOM05D003744 ORTHO05D004327 1.3e-29 134.8 79 75.9
arahy.Tifrunner.gnm1.ann1.G2KDP7 Arachis hypogaea HOM05D003744 ORTHO05D004327 1.3e-29 134.8 79 75.9
Peaxi162Scf00017g02835 Petunia axillaris HOM05D003744 ORTHO05D004327 1.3e-29 134.8 78 78.2
QL08p053649 Quercus lobata HOM05D003744 ORTHO05D004327 1.3e-29 134.8 81 77.8
arahy.Tifrunner.gnm1.ann1.686LQU Arachis hypogaea HOM05D003744 ORTHO05D004327 1.7e-29 134.4 79 75.9
arahy.Tifrunner.gnm1.ann1.KM1SID Arachis hypogaea HOM05D003744 ORTHO05D004327 1.7e-29 134.4 79 75.9
arahy.Tifrunner.gnm1.ann1.Z9T1G4 Arachis hypogaea HOM05D003744 ORTHO05D004327 1.7e-29 134.4 78 76.9
QL03p042814 Quercus lobata HOM05D003744 ORTHO05D004327 1.7e-29 134.4 81 77.8
QL03p058539 Quercus lobata HOM05D003744 ORTHO05D004327 1.7e-29 134.4 81 77.8
Ca_07785_v3 Cicer arietinum L. HOM05D003744 ORTHO05D004327 2.3e-29 134.0 81 75.3
TPR.G35100 Trifolium pratense HOM05D003744 ORTHO05D004327 2.3e-29 134.0 81 76.5
Duzib132G0191 Durio zibethinus HOM05D003744 ORTHO05D004327 3.0e-29 133.7 81 76.5
Glyma.18G216400 Glycine max HOM05D003744 ORTHO05D004327 3.0e-29 133.7 81 75.3
Lj1g0013770 Lotus japonicus HOM05D003744 ORTHO05D004327 3.0e-29 133.7 81 72.8
Potri.005G093600 Populus trichocarpa HOM05D003744 ORTHO05D004327 3.0e-29 133.7 81 74.1
Prupe.4G276200 Prunus persica HOM05D003744 ORTHO05D004327 3.0e-29 133.7 81 75.3
FvH4_4g36840 Fragaria vesca HOM05D003744 ORTHO05D004327 3.9e-29 133.3 81 75.3
RcHm_v2.0_Chr4g0446591 Rosa chinensis HOM05D003744 ORTHO05D004327 5.1e-29 132.9 81 75.3
MSTRG.11446 Avicennia marina HOM05D003744 ORTHO05D004327 6.6e-29 132.5 81 75.3
Medtr7g073970 Medicago truncatula HOM05D003744 ORTHO05D004327 6.6e-29 132.5 81 75.3
VMungo1383G1042 Vigna mungo HOM05D003744 ORTHO05D004327 6.6e-29 132.5 81 74.1
DCAR_026464 Daucus carota HOM05D003744 ORTHO05D004327 1.1e-28 131.7 81 72.8
Phvul.008G080300 Phaseolus vulgaris HOM05D003744 ORTHO05D004327 1.1e-28 131.7 81 74.1
Lalb_Chr12g0205351 Lupinus albus HOM05D003744 ORTHO05D004327 1.5e-28 131.3 81 75.3
Prupe.1G346500 Prunus persica HOM05D003744 ORTHO05D004327 1.5e-28 131.3 81 71.6
SalBow1G2569 Salvia bowleyana HOM05D003744 ORTHO05D004327 1.9e-28 131.0 110 56.4
Thecc.02G161400 Theobroma cacao HOM05D003744 ORTHO05D004327 1.9e-28 131.0 81 75.3
RcHm_v2.0_Chr5g0044921 Rosa chinensis HOM05D003744 ORTHO05D004327 2.5e-28 130.6 81 72.8
Haze_11743 Corylus avellana HOM05D003744 ORTHO05D004327 4.3e-28 129.8 79 79.7
Eucgr.H03234 Eucalyptus grandis HOM05D003744 ORTHO05D004327 4.3e-28 129.8 81 72.8
Lj1g0011441 Lotus japonicus HOM05D003744 ORTHO05D004327 4.3e-28 129.8 79 72.2
EL10Ac7g17368 Beta vulgaris HOM05D003744 ORTHO05D004327 5.6e-28 129.4 95 65.3
arahy.Tifrunner.gnm1.ann1.1L5CCL Arachis hypogaea HOM05D003744 ORTHO05D004327 7.3e-28 129.0 79 73.4
DCAR_029703 Daucus carota HOM05D003744 ORTHO05D004327 7.3e-28 129.0 81 71.6
Sc23g0003470 Simmondsia chinensis HOM05D003744 ORTHO05D004327 7.3e-28 129.0 81 72.8
vmacro07295 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 7.3e-28 129.0 81 75.3
Thecc.02G176000 Theobroma cacao HOM05D003744 ORTHO05D004327 1.6e-27 127.9 81 72.8
MD11G1112600 Malus domestica HOM05D003744 ORTHO05D004327 2.8e-27 127.1 81 71.6
CSS0044819 Camellia sinensis var. sinensis HOM05D003744 ORTHO05D004327 3.6e-27 126.7 81 75.3
Ah.15g093700 Amaranthus hybridus HOM05D003744 ORTHO05D004327 4.7e-27 126.3 81 72.8
MD11G1112700 Malus domestica HOM05D003744 ORTHO05D004327 4.7e-27 126.3 81 71.6
Migut.I00018 Erythranthe guttata HOM05D003744 ORTHO05D004327 6.2e-27 125.9 81 71.6
Rhsim09G0044700 Rhododendron simsii HOM05D003744 ORTHO05D004327 6.2e-27 125.9 81 72.8
RhsimUnG0157000 Rhododendron simsii HOM05D003744 ORTHO05D004327 6.2e-27 125.9 81 72.8
TWI53G1840 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 6.2e-27 125.9 81 69.1
ECA233G3748 Erigeron canadensis HOM05D003744 ORTHO05D004327 8.1e-27 125.6 81 71.6
Os08g0322600 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 8.1e-27 125.6 81 70.4
Os08g0389300 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 1.1e-26 125.2 82 67.1
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 1.1e-26 125.2 80 70.0
Aa31LG9G10990 Aethionema arabicum HOM05D003744 ORTHO05D004327 1.8e-26 124.4 81 72.8
AUR62034614 Chenopodium quinoa HOM05D003744 ORTHO05D004327 1.8e-26 124.4 81 71.6
Duzib132G0180 Durio zibethinus HOM05D003744 ORTHO05D004327 1.8e-26 124.4 81 70.4
HanXRQChr11g0332851 Helianthus annuus HOM05D003744 ORTHO05D004327 3.1e-26 123.6 81 71.6
ClCG10G011930 Citrullus lanatus HOM05D003744 ORTHO05D004327 5.2e-26 122.9 81 71.6
CANSAT78G0298 Cannabis sativa HOM05D003744 ORTHO05D004327 6.9e-26 122.5 81 69.1
MELO3C024026.2 Cucumis melo HOM05D003744 ORTHO05D004327 6.9e-26 122.5 81 71.6
CsaV3_3G031430 Cucumis sativus L. HOM05D003744 ORTHO05D004327 6.9e-26 122.5 81 71.6
Sed0024199 Sechium edule HOM05D003744 ORTHO05D004327 6.9e-26 122.5 81 71.6
Cc04_g13930 Coffea canephora HOM05D003744 ORTHO05D004327 9.0e-26 122.1 82 72.0
SalBow1G6149 Salvia bowleyana HOM05D003744 ORTHO05D004327 1.2e-25 121.7 79 69.6
AT4G23660 Arabidopsis thaliana HOM05D003744 ORTHO05D004327 3.4e-25 120.2 81 71.6
Os08g0388900 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 4.4e-25 119.8 81 66.7
THA.LOC104814817 Tarenaya hassleriana HOM05D003744 ORTHO05D004327 7.6e-25 119.0 81 69.1
Aa31LG6G6900 Aethionema arabicum HOM05D003744 ORTHO05D004327 1.3e-24 118.2 81 69.1
Thhalv10025345m.g Eutrema salsugineum HOM05D003744 ORTHO05D004327 2.2e-24 117.5 81 69.1
BraA03t14530Z Brassica rapa HOM05D003744 ORTHO05D004327 2.9e-24 117.1 91 62.6
Carub.0007s1748 Capsella rubella HOM05D003744 ORTHO05D004327 2.9e-24 117.1 81 69.1
ATR1100G008 Amborella trichopoda HOM05D003744 ORTHO05D004327 3.8e-24 116.7 79 63.3
AL7G29700 Arabidopsis lyrata HOM05D003744 ORTHO05D004327 3.8e-24 116.7 81 69.1
Cc04_g15800 Coffea canephora HOM05D003744 ORTHO05D004327 3.8e-24 116.7 83 62.7
PSO170G1927 Papaver somniferum HOM05D003744 ORTHO05D004327 3.8e-24 116.7 81 64.2
A03p54630 Brassica napus HOM05D003744 ORTHO05D004327 4.9e-24 116.3 81 67.9
BcaNung01074 Brassica carinata HOM05D003744 ORTHO05D004327 6.4e-24 115.9 81 67.9
AUR62036656 Chenopodium quinoa HOM05D003744 ORTHO05D004327 6.4e-24 115.9 76 69.7
BcaNung03441 Brassica carinata HOM05D003744 ORTHO05D004327 8.4e-24 115.5 81 67.9
C07p52950 Brassica napus HOM05D003744 ORTHO05D004327 8.4e-24 115.5 81 67.9
Cc00_g30150 Coffea canephora HOM05D003744 ORTHO05D004327 8.4e-24 115.5 79 65.8
Sp7g21590 Schrenkiella parvula HOM05D003744 ORTHO05D004327 8.4e-24 115.5 81 67.9
BolC7t45794H Brassica oleracea HOM05D003744 ORTHO05D004327 1.1e-23 115.2 83 65.1
BcaNung03181 Brassica carinata HOM05D003744 ORTHO05D004327 2.4e-23 114.0 81 66.7
BraA01t01437Z Brassica rapa HOM05D003744 ORTHO05D004327 2.4e-23 114.0 82 65.9
Sed0012155 Sechium edule HOM05D003744 ORTHO05D004327 3.2e-23 113.6 80 71.2
Gohir.A12G137600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 4.2e-23 113.2 81 64.2
Gohir.A12G137650 Gossypium hirsutum HOM05D003744 ORTHO05D004327 4.2e-23 113.2 81 64.2
SEGI_31034 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 4.2e-23 113.2 104 51.9
Gorai.008G153000 Gossypium raimondii HOM05D003744 ORTHO05D004327 5.4e-23 112.8 81 65.4
BcaC09g50959 Brassica carinata HOM05D003744 ORTHO05D004327 7.1e-23 112.5 81 65.4
C01p18750 Brassica napus HOM05D003744 ORTHO05D004327 7.1e-23 112.5 81 65.4
BolC1t01805H Brassica oleracea HOM05D003744 ORTHO05D004327 9.3e-23 112.1 80 66.2
Mapoly0100s0056 Marchantia polymorpha HOM05D003744 ORTHO05D004327 1.2e-22 111.7 81 60.5
A01p14960 Brassica napus HOM05D003744 ORTHO05D004327 1.6e-22 111.3 81 64.2
Gohir.D12G141600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.6e-22 111.3 81 64.2
HPP92_014779 Vanilla planifolia HOM05D003744 ORTHO05D004327 1.6e-22 111.3 81 59.3
SEGI_29356 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 2.1e-22 110.9 79 60.8
BcaB03g12405 Brassica carinata HOM05D003744 ORTHO05D004327 4.6e-22 109.8 81 63.0
Zm00001eb190740 Zea mays HOM05D003744 ORTHO05D004327 1.0e-21 108.6 81 63.0
Lsat_1_v5_gn_6_17921 Lactuca sativa HOM05D003744 ORTHO05D004327 1.7e-21 107.8 81 65.4
Lj2g0000279 Lotus japonicus HOM05D003744 ORTHO05D004327 2.3e-21 107.5 66 69.7
AagrBONN_evm.TU.Sc2ySwM_340.154 Anthoceros agrestis HOM05D003744 ORTHO05D004327 8.7e-21 105.5 95 50.5
Cc04_g13880 Coffea canephora HOM05D003744 ORTHO05D004327 9.6e-20 102.1 72 63.9
Pp3c17_13460 Physcomitrium patens HOM05D003744 ORTHO05D004327 2.1e-19 100.9 81 59.3
SMO164G0212 Selaginella moellendorffii HOM05D003744 ORTHO05D004327 3.1e-18 97.1 79 54.4
Medtr3g111660 Medicago truncatula HOM05D003744 ORTHO05D004327 6.4e-16 89.4 61 67.2
Aqoxy5G02199 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.2e-14 85.1 47 80.9
Aqoxy94s001 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.2e-14 85.1 47 80.9
Aqoxy94s003 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.2e-14 85.1 47 80.9
CBR_g5669 Chara braunii HOM05D003744 ORTHO05D004327 1.6e-14 84.7 81 54.3
TAR374G1156 Trochodendron aralioides HOM05D003744 ORTHO05D004327 2.1e-14 84.3 46 84.8
CDE05G3331 Ceratophyllum demersum HOM05D003744 ORTHO05D004327 3.5e-14 83.6 55 61.8
MD16G1001300 Malus domestica HOM05D003744 ORTHO05D004327 6.0e-14 82.8 81 55.6
FAN17G0528 Fragaria x ananassa HOM05D003744 ORTHO05D004327 3.3e-12 77.0 51 66.7
TWI53G1336 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 1.6e-11 74.7 47 70.2
Lalb_Chr12g0204281 Lupinus albus HOM05D003744 ORTHO05D004327 4.8e-11 73.2 46 69.6
unitig_52.g17488 Utricularia gibba HOM05D003744 ORTHO05D004327 8.1e-11 72.4 46 71.7
SEGI_19125 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 4.0e-10 70.1 47 63.8
vmacro10898 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 4.0e-10 70.1 48 66.7
Cre06.g291800 Chlamydomonas reinhardtii HOM05D003744 ORTHO05D004327 1.2e-09 68.6 79 45.6
TPR.G23229 Trifolium pratense HOM05D003744 ORTHO05D004327 2.4e-07 60.8 34 76.5
Aqoxy5G00880 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 3.2e-07 60.5 34 76.5
MCO12G284 Micromonas commoda HOM05D003744 ORTHO05D004327 7.1e-07 59.3 86 37.2
BcaC01g00486 Brassica carinata HOM05D003744 ORTHO05D004327 1.2e-06 58.5 75 45.3


User provided reference genes

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