Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR372G0001 Trochodendron aralioides HOM05D003571 ORTHO05D004193 3.7e-64 248.1 127 100.0
TAR636G0639 Trochodendron aralioides HOM05D003571 ORTHO05D004193 4.9e-24 114.8 73 76.7
TAR636G1534 Trochodendron aralioides HOM05D003571 ORTHO05D004193 4.9e-24 114.8 73 76.7
TAR623G0708 Trochodendron aralioides HOM05D003571 ORTHO05D004193 3.9e-21 105.1 73 71.2
PSO063G1543 Papaver somniferum HOM05D003571 ORTHO05D004193 1.4e-18 96.7 73 61.6
PSO339G3261 Papaver somniferum HOM05D003571 ORTHO05D004193 1.4e-18 96.7 73 61.6
TAR369G1024 Trochodendron aralioides HOM05D003571 ORTHO05D004193 2.4e-18 95.9 73 65.8
Nn2g13718 Nelumbo nucifera HOM05D003571 ORTHO05D004193 4.5e-17 91.7 73 58.9
Dinv35764 Davidia involucrata HOM05D003571 ORTHO05D004193 1.0e-16 90.5 81 55.6
Aqoxy1G01208 Aquilegia oxysepala HOM05D003571 ORTHO05D004193 1.3e-16 90.1 73 58.9
MBI07_g30986_MAGBIO Magnolia biondii HOM05D003571 ORTHO05D004193 1.3e-16 90.1 73 56.2
Nn2g11512 Nelumbo nucifera HOM05D003571 ORTHO05D004193 2.2e-16 89.4 71 60.6
CiPaw.09G174600 Carya illinoinensis HOM05D003571 ORTHO05D004193 6.5e-16 87.8 74 56.8
Prupe.6G235600 Prunus persica HOM05D003571 ORTHO05D004193 6.5e-16 87.8 74 54.1
Ciclev10010923m.g Citrus clementina HOM05D003571 ORTHO05D004193 1.4e-15 86.7 74 58.1
Lj2C113T5 Lonicera japonica HOM05D003571 ORTHO05D004193 1.9e-15 86.3 73 58.9
PGR142G1072 Punica granatum HOM05D003571 ORTHO05D004193 5.5e-15 84.7 73 57.5
CSS0031681 Camellia sinensis var. sinensis HOM05D003571 ORTHO05D004193 7.2e-15 84.3 74 58.1
CSS0040711 Camellia sinensis var. sinensis HOM05D003571 ORTHO05D004193 7.2e-15 84.3 74 58.1
Atru.chr8.1854 Acer truncatum HOM05D003571 ORTHO05D004193 9.4e-15 84.0 75 56.0
PSO801G0607 Papaver somniferum HOM05D003571 ORTHO05D004193 9.4e-15 84.0 73 58.9
CARHR210060 Cardamine hirsuta HOM05D003571 ORTHO05D004193 1.2e-14 83.6 73 56.2
Cpa.g.sc390.5 Carica papaya HOM05D003571 ORTHO05D004193 1.2e-14 83.6 73 52.1
Haze_20580 Corylus avellana HOM05D003571 ORTHO05D004193 1.2e-14 83.6 73 57.5
TWI74G0293 Tripterygium wilfordii HOM05D003571 ORTHO05D004193 1.2e-14 83.6 73 54.8
Actinidia19664 Actinidia chinensis HOM05D003571 ORTHO05D004193 1.6e-14 83.2 73 56.2
MD04G1096400 Malus domestica HOM05D003571 ORTHO05D004193 1.6e-14 83.2 73 52.1
PSO339G5477 Papaver somniferum HOM05D003571 ORTHO05D004193 2.1e-14 82.8 73 57.5
Cfa017571 Carpinus fangiana HOM05D003571 ORTHO05D004193 2.7e-14 82.4 73 56.2
THA.LOC104826906 Tarenaya hassleriana HOM05D003571 ORTHO05D004193 2.7e-14 82.4 73 53.4
AT5G03280 Arabidopsis thaliana HOM05D003571 ORTHO05D004193 3.6e-14 82.0 73 54.8
Rhsim04G0146600 Rhododendron simsii HOM05D003571 ORTHO05D004193 3.6e-14 82.0 81 53.1
Thhalv10012456m.g Eutrema salsugineum HOM05D003571 ORTHO05D004193 4.6e-14 81.6 73 56.2
Manes.08G008200 Manihot esculenta HOM05D003571 ORTHO05D004193 6.1e-14 81.3 63 60.3
Potri.016G090800 Populus trichocarpa HOM05D003571 ORTHO05D004193 7.9e-14 80.9 73 53.4
AL6G12590 Arabidopsis lyrata HOM05D003571 ORTHO05D004193 1.0e-13 80.5 73 54.8
Psat3g041280 Pisum sativum HOM05D003571 ORTHO05D004193 1.0e-13 80.5 61 63.9
Sabra06G0100000 Salix brachista HOM05D003571 ORTHO05D004193 1.0e-13 80.5 73 54.8
Duzib106G0011 Durio zibethinus HOM05D003571 ORTHO05D004193 1.4e-13 80.1 73 52.1
Rhsim05G0180200 Rhododendron simsii HOM05D003571 ORTHO05D004193 1.4e-13 80.1 73 54.8
BcaC06g32048 Brassica carinata HOM05D003571 ORTHO05D004193 1.8e-13 79.7 73 53.4
TPR.G16043 Trifolium pratense HOM05D003571 ORTHO05D004193 1.8e-13 79.7 73 54.8
Aa31LG1G21830 Aethionema arabicum HOM05D003571 ORTHO05D004193 2.3e-13 79.3 80 48.8
Dinv37294 Davidia involucrata HOM05D003571 ORTHO05D004193 2.3e-13 79.3 73 54.8
GSVIVG01025700001 Vitis vinifera HOM05D003571 ORTHO05D004193 2.3e-13 79.3 73 54.8
Cc00_g20760 Coffea canephora HOM05D003571 ORTHO05D004193 3.0e-13 79.0 59 62.7
Manes.09G063600 Manihot esculenta HOM05D003571 ORTHO05D004193 3.0e-13 79.0 73 50.7
Medtr0041s0030 Medicago truncatula HOM05D003571 ORTHO05D004193 3.0e-13 79.0 73 56.2
Potri.006G127100 Populus trichocarpa HOM05D003571 ORTHO05D004193 3.0e-13 79.0 73 52.1
Carub.0006s0208 Capsella rubella HOM05D003571 ORTHO05D004193 3.9e-13 78.6 73 52.1
Sp6g39460 Schrenkiella parvula HOM05D003571 ORTHO05D004193 3.9e-13 78.6 73 53.4
CSS0014133 Camellia sinensis var. sinensis HOM05D003571 ORTHO05D004193 5.1e-13 78.2 63 60.3
CSS0046537 Camellia sinensis var. sinensis HOM05D003571 ORTHO05D004193 5.1e-13 78.2 63 60.3
Gohir.A04G073500 Gossypium hirsutum HOM05D003571 ORTHO05D004193 5.1e-13 78.2 73 52.1
Gohir.D04G112300 Gossypium hirsutum HOM05D003571 ORTHO05D004193 5.1e-13 78.2 73 52.1
vmacro08767 Vaccinium macrocarpon HOM05D003571 ORTHO05D004193 5.1e-13 78.2 94 45.7
Ca_08847_v3 Cicer arietinum L. HOM05D003571 ORTHO05D004193 6.7e-13 77.8 73 50.7
MD12G1117400 Malus domestica HOM05D003571 ORTHO05D004193 6.7e-13 77.8 73 49.3
QL07p044235 Quercus lobata HOM05D003571 ORTHO05D004193 6.7e-13 77.8 73 53.4
TWI53G0828 Tripterygium wilfordii HOM05D003571 ORTHO05D004193 6.7e-13 77.8 70 57.1
ATR0048G031 Amborella trichopoda HOM05D003571 ORTHO05D004193 1.1e-12 77.0 73 53.4
arahy.Tifrunner.gnm1.ann1.4G0IWV Arachis hypogaea HOM05D003571 ORTHO05D004193 1.1e-12 77.0 73 50.7
arahy.Tifrunner.gnm1.ann1.SVA4CI Arachis hypogaea HOM05D003571 ORTHO05D004193 1.1e-12 77.0 73 50.7
BcaNung06157 Brassica carinata HOM05D003571 ORTHO05D004193 1.1e-12 77.0 72 52.8
Gohir.A11G324380 Gossypium hirsutum HOM05D003571 ORTHO05D004193 1.1e-12 77.0 73 52.1
Gorai.009G416700 Gossypium raimondii HOM05D003571 ORTHO05D004193 1.1e-12 77.0 73 50.7
Lj3C982T5 Lonicera japonica HOM05D003571 ORTHO05D004193 1.1e-12 77.0 61 55.7
Os07g0155600 Oryza sativa ssp. japonica HOM05D003571 ORTHO05D004193 1.1e-12 77.0 58 62.1
RcHm_v2.0_Chr3g0469791 Rosa chinensis HOM05D003571 ORTHO05D004193 1.1e-12 77.0 74 43.2
Gohir.D11G343600 Gossypium hirsutum HOM05D003571 ORTHO05D004193 1.5e-12 76.6 73 52.1
Gorai.007G373800 Gossypium raimondii HOM05D003571 ORTHO05D004193 1.5e-12 76.6 73 52.1
Sabra16G0096300 Salix brachista HOM05D003571 ORTHO05D004193 1.9e-12 76.3 73 50.7
arahy.Tifrunner.gnm1.ann1.QCG7AI Arachis hypogaea HOM05D003571 ORTHO05D004193 2.5e-12 75.9 73 49.3
Glyma.03G181400 Glycine max HOM05D003571 ORTHO05D004193 2.5e-12 75.9 59 55.9
vmacro20027 Vaccinium macrocarpon HOM05D003571 ORTHO05D004193 2.5e-12 75.9 78 53.8
VMungo1383G0779 Vigna mungo HOM05D003571 ORTHO05D004193 2.5e-12 75.9 76 47.4
arahy.Tifrunner.gnm1.ann1.W3VJBC Arachis hypogaea HOM05D003571 ORTHO05D004193 3.3e-12 75.5 73 47.9
A10p32660 Brassica napus HOM05D003571 ORTHO05D004193 3.3e-12 75.5 61 59.0
BraA10t45303Z Brassica rapa HOM05D003571 ORTHO05D004193 3.3e-12 75.5 61 59.0
MSTRG.5747 Avicennia marina HOM05D003571 ORTHO05D004193 4.3e-12 75.1 57 63.2
ClCG04G009140 Citrullus lanatus HOM05D003571 ORTHO05D004193 5.7e-12 74.7 73 47.9
Thecc.05G061900 Theobroma cacao HOM05D003571 ORTHO05D004193 5.7e-12 74.7 59 61.0
CsaV3_6G039650 Cucumis sativus L. HOM05D003571 ORTHO05D004193 7.4e-12 74.3 73 47.9
Phvul.001G177500 Phaseolus vulgaris HOM05D003571 ORTHO05D004193 7.4e-12 74.3 78 44.9
THA.LOC104816665 Tarenaya hassleriana HOM05D003571 ORTHO05D004193 7.4e-12 74.3 70 51.4
HPP92_012165 Vanilla planifolia HOM05D003571 ORTHO05D004193 7.4e-12 74.3 67 49.3
Actinidia31342 Actinidia chinensis HOM05D003571 ORTHO05D004193 9.7e-12 73.9 57 59.6
C09p73500 Brassica napus HOM05D003571 ORTHO05D004193 9.7e-12 73.9 72 51.4
BolC9t60082H Brassica oleracea HOM05D003571 ORTHO05D004193 9.7e-12 73.9 72 51.4
COL.COLO4_26995 Corchorus olitorius HOM05D003571 ORTHO05D004193 9.7e-12 73.9 73 50.7
Lalb_Chr25g0289091 Lupinus albus HOM05D003571 ORTHO05D004193 9.7e-12 73.9 69 49.3
Migut.J00540 Erythranthe guttata HOM05D003571 ORTHO05D004193 1.3e-11 73.6 57 59.6
Glyma.13G145100 Glycine max HOM05D003571 ORTHO05D004193 1.3e-11 73.6 61 54.1
Solyc09g007870.3 Solanum lycopersicum HOM05D003571 ORTHO05D004193 1.3e-11 73.6 57 59.6
PGSC0003DMG400021547 Solanum tuberosum HOM05D003571 ORTHO05D004193 1.3e-11 73.6 57 59.6
Duzib093G0844 Durio zibethinus HOM05D003571 ORTHO05D004193 1.7e-11 73.2 73 46.6
Glyma.10G058300 Glycine max HOM05D003571 ORTHO05D004193 1.7e-11 73.2 77 48.1
Gohir.A09G149000 Gossypium hirsutum HOM05D003571 ORTHO05D004193 1.7e-11 73.2 61 59.0
Gohir.D09G144900 Gossypium hirsutum HOM05D003571 ORTHO05D004193 1.7e-11 73.2 61 59.0
Gorai.006G166200 Gossypium raimondii HOM05D003571 ORTHO05D004193 1.7e-11 73.2 61 59.0
MELO3C014230.2 Cucumis melo HOM05D003571 ORTHO05D004193 2.2e-11 72.8 73 46.6
Gorai.006G110900 Gossypium raimondii HOM05D003571 ORTHO05D004193 2.2e-11 72.8 56 60.7
Sed0017601 Sechium edule HOM05D003571 ORTHO05D004193 2.2e-11 72.8 73 46.6
Eucgr.K01247 Eucalyptus grandis HOM05D003571 ORTHO05D004193 2.8e-11 72.4 73 47.9
Gohir.D09G094300 Gossypium hirsutum HOM05D003571 ORTHO05D004193 2.8e-11 72.4 56 60.7
MSTRG.19160 Avicennia marina HOM05D003571 ORTHO05D004193 3.7e-11 72.0 57 56.1
CANSAT80G1173 Cannabis sativa HOM05D003571 ORTHO05D004193 3.7e-11 72.0 57 59.6
ECA238G4675 Erigeron canadensis HOM05D003571 ORTHO05D004193 3.7e-11 72.0 70 45.7
Nitab4.5_0005320g0030 Nicotiana tabacum HOM05D003571 ORTHO05D004193 3.7e-11 72.0 57 54.4
Sopen09g002710 Solanum pennellii HOM05D003571 ORTHO05D004193 3.7e-11 72.0 57 59.6
VMungo0720G3123 Vigna mungo HOM05D003571 ORTHO05D004193 4.8e-11 71.6 60 51.7
CAN.G363.21 Capsicum annuum HOM05D003571 ORTHO05D004193 6.3e-11 71.2 57 54.4
Lj1g0021596 Lotus japonicus HOM05D003571 ORTHO05D004193 6.3e-11 71.2 61 50.8
DCAR_009299 Daucus carota HOM05D003571 ORTHO05D004193 8.2e-11 70.9 67 52.2
Peaxi162Scf00123g00089 Petunia axillaris HOM05D003571 ORTHO05D004193 8.2e-11 70.9 57 56.1
Phvul.007G150600 Phaseolus vulgaris HOM05D003571 ORTHO05D004193 8.2e-11 70.9 59 54.2
SalBow3G2504 Salvia bowleyana HOM05D003571 ORTHO05D004193 8.2e-11 70.9 57 59.6
SalBow3G3339 Salvia bowleyana HOM05D003571 ORTHO05D004193 8.2e-11 70.9 57 59.6
SGA_v2.0_scaffold126G33934 Striga asiatica HOM05D003571 ORTHO05D004193 8.2e-11 70.9 68 50.0
MSTRG.26704 Avicennia marina HOM05D003571 ORTHO05D004193 1.1e-10 70.5 57 59.6
Sed0010243 Sechium edule HOM05D003571 ORTHO05D004193 1.1e-10 70.5 57 52.6
FAN02G1851 Fragaria x ananassa HOM05D003571 ORTHO05D004193 1.4e-10 70.1 73 41.1
FAN05G4723 Fragaria x ananassa HOM05D003571 ORTHO05D004193 1.4e-10 70.1 73 41.1
HanXRQChr01g0027351 Helianthus annuus HOM05D003571 ORTHO05D004193 1.8e-10 69.7 73 46.6
Oeu016972.1 Olea europaea HOM05D003571 ORTHO05D004193 1.8e-10 69.7 73 46.6
Glyma.19G182151 Glycine max HOM05D003571 ORTHO05D004193 3.1e-10 68.9 73 46.6
Zm00001eb054060 Zea mays HOM05D003571 ORTHO05D004193 3.1e-10 68.9 53 56.6
FvH4_6g16040 Fragaria vesca HOM05D003571 ORTHO05D004193 5.3e-10 68.2 73 39.7
FAN14G4150 Fragaria x ananassa HOM05D003571 ORTHO05D004193 5.3e-10 68.2 73 39.7
Lsat_1_v5_gn_1_53261 Lactuca sativa HOM05D003571 ORTHO05D004193 6.9e-10 67.8 66 42.4
Zm00001eb216860 Zea mays HOM05D003571 ORTHO05D004193 6.9e-10 67.8 55 52.7
EL10Ac1g01686 Beta vulgaris HOM05D003571 ORTHO05D004193 1.2e-09 67.0 61 49.2
Os03g0700800 Oryza sativa ssp. japonica HOM05D003571 ORTHO05D004193 1.2e-09 67.0 49 57.1
Lsat_1_v5_gn_2_106480 Lactuca sativa HOM05D003571 ORTHO05D004193 2.0e-09 66.2 65 44.6
FAN09G2327 Fragaria x ananassa HOM05D003571 ORTHO05D004193 2.6e-09 65.9 73 39.7
Lj5g0026041 Lotus japonicus HOM05D003571 ORTHO05D004193 2.6e-09 65.9 54 50.0
Ah.05g168560 Amaranthus hybridus HOM05D003571 ORTHO05D004193 5.9e-09 64.7 73 45.2
HanXRQChr07g0195371 Helianthus annuus HOM05D003571 ORTHO05D004193 7.7e-09 64.3 70 42.9
ECA248G2435 Erigeron canadensis HOM05D003571 ORTHO05D004193 1.0e-08 63.9 57 50.9
Sc20g0005320 Simmondsia chinensis HOM05D003571 ORTHO05D004193 1.3e-08 63.5 53 56.6
DCAR_020834 Daucus carota HOM05D003571 ORTHO05D004193 1.7e-08 63.2 60 50.0
Oeu005332.2 Olea europaea HOM05D003571 ORTHO05D004193 6.5e-08 61.2 60 48.3
AUR62034361 Chenopodium quinoa HOM05D003571 ORTHO05D004193 1.1e-07 60.5 75 40.0
AUR62022345 Chenopodium quinoa HOM05D003571 ORTHO05D004193 1.4e-07 60.1 75 40.0
Hund17522 Selenicereus undatus HOM05D003571 ORTHO05D004193 1.4e-07 60.1 57 45.6
HanXRQChr11g0350181 Helianthus annuus HOM05D003571 ORTHO05D004193 3.2e-07 58.9 73 39.7
Sc02g0001780 Simmondsia chinensis HOM05D003571 ORTHO05D004193 9.4e-07 57.4 53 50.9
Pp3c27_2050 Physcomitrium patens HOM05D003571 ORTHO05D004193 1.2e-06 57.0 59 44.1
AagrBONN_evm.TU.Sc2ySwM_368.249 Anthoceros agrestis HOM05D003571 ORTHO05D004193 6.1e-06 54.7 54 48.1
Lalb_Chr01g0018791 Lupinus albus HOM05D003571 ORTHO05D004193 6.1e-06 54.7 74 35.1


User provided reference genes

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