Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G1228 Trochodendron aralioides HOM05D000156 ORTHO05D001290 3.0e-38 161.4 83 100.0
TAR622G0975 Trochodendron aralioides HOM05D002668 ORTHO05D003295 2.2e-25 118.6 76 77.6
TAR626G1044 Trochodendron aralioides HOM05D000156 ORTHO05D001290 8.5e-25 116.7 72 80.6
Nn6g35515 Nelumbo nucifera HOM05D000156 ORTHO05D001290 3.7e-20 101.3 76 63.2
CiPaw.16G027600 Carya illinoinensis HOM05D000156 ORTHO05D001290 1.8e-19 99.0 80 60.0
GSVIVG01035382001 Vitis vinifera HOM05D000156 ORTHO05D001290 4.1e-19 97.8 77 63.6
Manes.16G081700 Manihot esculenta HOM05D000156 ORTHO05D001290 9.1e-19 96.7 75 61.3
Potri.006G226600 Populus trichocarpa HOM05D000156 ORTHO05D001290 9.1e-19 96.7 76 63.2
TWI32G0473 Tripterygium wilfordii HOM05D000156 ORTHO05D001290 1.2e-18 96.3 80 58.8
CiPaw.15G037300 Carya illinoinensis HOM05D000156 ORTHO05D001290 1.6e-18 95.9 76 61.8
TWI63G0128 Tripterygium wilfordii HOM05D000156 ORTHO05D001290 1.6e-18 95.9 82 56.1
COL.COLO4_21079 Corchorus olitorius HOM05D000156 ORTHO05D001290 2.0e-18 95.5 76 64.5
Sabra06G0175300 Salix brachista HOM05D000156 ORTHO05D001290 2.7e-18 95.1 76 61.8
MD15G1057400 Malus domestica HOM05D000156 ORTHO05D001290 5.9e-18 94.0 72 63.9
Haze_18162 Corylus avellana HOM05D000156 ORTHO05D001290 7.7e-18 93.6 75 60.0
FvH4_2g31650 Fragaria vesca HOM05D000156 ORTHO05D001290 1.3e-17 92.8 76 59.2
FAN15G1479 Fragaria x ananassa HOM05D000156 ORTHO05D001290 1.3e-17 92.8 76 59.2
FAN24G0225 Fragaria x ananassa HOM05D000156 ORTHO05D001290 1.3e-17 92.8 76 59.2
Dinv22882 Davidia involucrata HOM05D000156 ORTHO05D001290 2.2e-17 92.0 78 61.5
Prupe.1G409900 Prunus persica HOM05D000156 ORTHO05D001290 2.2e-17 92.0 76 57.9
Cfa017969 Carpinus fangiana HOM05D000521 ORTHO05D000384 2.9e-17 91.7 76 57.9
RcHm_v2.0_Chr6g0311171 Rosa chinensis HOM05D000156 ORTHO05D001290 2.9e-17 91.7 76 57.9
Duzib187G0968 Durio zibethinus HOM05D000156 ORTHO05D001290 5.0e-17 90.9 76 61.8
FAN27G3499 Fragaria x ananassa HOM05D000156 ORTHO05D001290 6.5e-17 90.5 76 57.9
Cc08_g10830 Coffea canephora HOM05D000156 ORTHO05D001290 1.5e-16 89.4 77 66.2
QL02p000935 Quercus lobata HOM05D000156 ORTHO05D001290 1.5e-16 89.4 76 61.8
MD08G1064300 Malus domestica HOM05D000156 ORTHO05D001290 1.9e-16 89.0 72 59.7
Potri.018G062001 Populus trichocarpa HOM05D000156 ORTHO05D001290 3.2e-16 88.2 73 60.3
MELO3C016880.2 Cucumis melo HOM05D000156 ORTHO05D001290 7.2e-16 87.0 76 50.0
ClCG05G017970 Citrullus lanatus HOM05D000156 ORTHO05D001290 9.4e-16 86.7 81 51.9
Sed0026421 Sechium edule HOM05D000156 ORTHO05D001290 9.4e-16 86.7 80 51.2
Gohir.A07G021800 Gossypium hirsutum HOM05D000156 ORTHO05D001290 1.2e-15 86.3 77 58.4
Cpa.g.sc7.165 Carica papaya HOM05D000156 ORTHO05D001290 2.1e-15 85.5 82 53.7
CsaV3_4G035750 Cucumis sativus L. HOM05D000156 ORTHO05D001290 2.7e-15 85.1 81 49.4
Duzib168G0281 Durio zibethinus HOM05D000156 ORTHO05D001290 2.7e-15 85.1 76 59.2
Actinidia30323 Actinidia chinensis HOM05D000156 ORTHO05D001290 3.6e-15 84.7 80 60.0
QL01p032824 Quercus lobata HOM05D000156 ORTHO05D001290 3.6e-15 84.7 72 61.1
CANSAT25G0228 Cannabis sativa HOM05D000156 ORTHO05D001290 4.7e-15 84.3 79 57.0
CSS0012750 Camellia sinensis var. sinensis HOM05D000156 ORTHO05D001290 6.1e-15 84.0 82 57.3
CSS0020812 Camellia sinensis var. sinensis HOM05D000156 ORTHO05D001290 6.1e-15 84.0 82 57.3
Gorai.001G022300 Gossypium raimondii HOM05D000156 ORTHO05D001290 6.1e-15 84.0 77 57.1
Rhsim11G0042700 Rhododendron simsii HOM05D000156 ORTHO05D001290 8.0e-15 83.6 73 56.2
Thecc.09G056600 Theobroma cacao HOM05D000156 ORTHO05D001290 1.4e-14 82.8 76 60.5
Gohir.D07G021600 Gossypium hirsutum HOM05D000156 ORTHO05D001290 1.8e-14 82.4 77 55.8
Actinidia01225 Actinidia chinensis HOM05D000156 ORTHO05D001290 2.3e-14 82.0 73 61.6
Nn8g38807 Nelumbo nucifera HOM05D000156 ORTHO05D001290 2.3e-14 82.0 76 55.3
Lj7A265T33 Lonicera japonica HOM05D000156 ORTHO05D001290 3.0e-14 81.6 70 60.0
Sc09g0009920 Simmondsia chinensis HOM05D000156 ORTHO05D001290 4.0e-14 81.3 76 53.9
Atru.chr7.1102 Acer truncatum HOM05D000156 ORTHO05D001290 5.2e-14 80.9 67 59.7
Phvul.009G078500 Phaseolus vulgaris HOM05D000156 ORTHO05D001290 5.2e-14 80.9 72 62.5
Eucgr.C03057 Eucalyptus grandis HOM05D000156 ORTHO05D001290 8.8e-14 80.1 69 60.9
vmacro00128 Vaccinium macrocarpon HOM05D000156 ORTHO05D001290 1.2e-13 79.7 74 55.4
CSS0012707 Camellia sinensis var. sinensis HOM05D000156 ORTHO05D001290 1.5e-13 79.3 78 57.7
Aa31LG5G9610 Aethionema arabicum HOM05D000156 ORTHO05D001290 2.0e-13 79.0 67 59.7
Ciclev10008250m.g Citrus clementina HOM05D000156 ORTHO05D001290 2.6e-13 78.6 79 54.4
Glyma.04G052200 Glycine max HOM05D000156 ORTHO05D001290 3.4e-13 78.2 77 55.8
Nitab4.5_0006852g0010 Nicotiana tabacum HOM05D000156 ORTHO05D001290 4.4e-13 77.8 85 54.1
MSTRG.25957 Avicennia marina HOM05D000156 ORTHO05D001290 5.7e-13 77.4 81 58.0
VMungo1309G3124 Vigna mungo HOM05D000156 ORTHO05D001290 5.7e-13 77.4 72 59.7
Dinv37900 Davidia involucrata HOM05D000156 ORTHO05D001290 7.5e-13 77.0 73 58.9
Glyma.06G052800 Glycine max HOM05D000156 ORTHO05D001290 9.8e-13 76.6 81 49.4
Oeu013995.1 Olea europaea HOM05D000156 ORTHO05D001290 9.8e-13 76.6 80 58.8
HanXRQChr07g0207171 Helianthus annuus HOM05D000156 ORTHO05D001290 1.3e-12 76.3 76 51.3
Thhalv10001997m.g Eutrema salsugineum HOM05D000156 ORTHO05D001290 1.7e-12 75.9 67 55.2
Hma1.2p1_0496F.1_g165910 Hydrangea macrophylla HOM05D000156 ORTHO05D001290 1.7e-12 75.9 73 56.2
Hund03327 Selenicereus undatus HOM05D000156 ORTHO05D001290 1.7e-12 75.9 78 53.8
Sp4g06210 Schrenkiella parvula HOM05D000156 ORTHO05D001290 2.2e-12 75.5 67 55.2
Ah.10g034160 Amaranthus hybridus HOM05D000156 ORTHO05D001290 2.8e-12 75.1 74 54.1
PSO210G1014 Papaver somniferum HOM05D000156 ORTHO05D001290 2.8e-12 75.1 87 48.3
Psat5g036280 Pisum sativum HOM05D000156 ORTHO05D001290 2.8e-12 75.1 71 56.3
Psat5g036320 Pisum sativum HOM05D000156 ORTHO05D001290 2.8e-12 75.1 71 56.3
Peaxi162Scf00327g00048 Petunia axillaris HOM05D000156 ORTHO05D001290 3.7e-12 74.7 70 57.1
Ca_15822_v3 Cicer arietinum L. HOM05D000156 ORTHO05D001290 4.8e-12 74.3 70 57.1
Ca_15856_v3 Cicer arietinum L. HOM05D000156 ORTHO05D001290 4.8e-12 74.3 70 57.1
TPR.G3554 Trifolium pratense HOM05D000156 ORTHO05D001290 4.8e-12 74.3 70 57.1
AUR62039131 Chenopodium quinoa HOM05D000156 ORTHO05D001290 8.3e-12 73.6 68 57.4
Migut.A00122 Erythranthe guttata HOM05D000156 ORTHO05D001290 8.3e-12 73.6 82 51.2
AUR62009124 Chenopodium quinoa HOM05D000156 ORTHO05D001290 1.1e-11 73.2 68 57.4
Lsat_1_v5_gn_6_14000 Lactuca sativa HOM05D000156 ORTHO05D001290 1.1e-11 73.2 76 51.3
Sed0026456 Sechium edule HOM05D000156 ORTHO05D001290 1.1e-11 73.2 80 46.2
SGA_v2.0_scaffold20G09214 Striga asiatica HOM05D000156 ORTHO05D001290 1.4e-11 72.8 77 49.4
Lj8A531T44 Lonicera japonica HOM05D000156 ORTHO05D001290 1.8e-11 72.4 74 47.3
ECA232G4899 Erigeron canadensis HOM05D000156 ORTHO05D001290 4.1e-11 71.2 78 50.0
ECA233G5012 Erigeron canadensis HOM05D000156 ORTHO05D001290 4.1e-11 71.2 70 54.3
GSVIVG01016801001 Vitis vinifera HOM05D000521 ORTHO05D000384 4.1e-11 71.2 77 53.2
CDE06G2466 Ceratophyllum demersum HOM05D000156 ORTHO05D001290 5.4e-11 70.9 82 47.6
SHI18727 Sapria himalayana HOM05D000156 ORTHO05D001290 5.4e-11 70.9 69 50.7
CARHR114950 Cardamine hirsuta HOM05D000156 ORTHO05D001290 9.1e-11 70.1 67 52.2
Lj1g0002385 Lotus japonicus HOM05D000156 ORTHO05D001290 9.1e-11 70.1 81 49.4
Medtr3g104570 Medicago truncatula HOM05D000156 ORTHO05D001290 1.2e-10 69.7 70 52.9
AL4G18620 Arabidopsis lyrata HOM05D000156 ORTHO05D001290 1.6e-10 69.3 67 52.2
AT2G26180 Arabidopsis thaliana HOM05D000156 ORTHO05D001290 5.9e-10 67.4 67 50.7
Aqoxy7G01182 Aquilegia oxysepala HOM05D000156 ORTHO05D001290 1.0e-09 66.6 80 45.0
CDE06G1138 Ceratophyllum demersum HOM05D000251 ORTHO05D001706 1.0e-09 66.6 73 49.3
Cpa.g.sc25.70 Carica papaya HOM05D000156 ORTHO05D001290 1.3e-09 66.2 76 52.6
arahy.Tifrunner.gnm1.ann1.RUN3GV Arachis hypogaea HOM05D000156 ORTHO05D001290 2.2e-09 65.5 82 46.3
SalBow4G0013 Salvia bowleyana HOM05D000156 ORTHO05D001290 2.2e-09 65.5 77 49.4
Thecc.06G114000 Theobroma cacao HOM05D000156 ORTHO05D001290 2.2e-09 65.5 81 46.9
BolC4t27129H Brassica oleracea HOM05D000156 ORTHO05D001290 3.8e-09 64.7 82 41.5
C04p55960 Brassica napus HOM05D000156 ORTHO05D001290 5.0e-09 64.3 67 49.3
Carub.0004s0603 Capsella rubella HOM05D000156 ORTHO05D001290 5.0e-09 64.3 68 50.0
Ciclev10027246m.g Citrus clementina HOM05D000521 ORTHO05D000384 5.0e-09 64.3 73 46.6
Potri.003G042700 Populus trichocarpa HOM05D000156 ORTHO05D001290 5.0e-09 64.3 67 53.7
CANSAT56G3157 Cannabis sativa HOM05D000156 ORTHO05D001290 8.5e-09 63.5 82 45.1
PGR044G0959 Punica granatum HOM05D000156 ORTHO05D001290 8.5e-09 63.5 77 48.1
HanXRQChr09g0276611 Helianthus annuus HOM05D000156 ORTHO05D001290 1.1e-08 63.2 87 42.5
Lsat_1_v5_gn_0_13420 Lactuca sativa HOM05D000156 ORTHO05D001290 1.1e-08 63.2 78 47.4
COL.COLO4_38599 Corchorus olitorius HOM05D000521 ORTHO05D000384 1.5e-08 62.8 83 48.2
Gohir.A05G407300 Gossypium hirsutum HOM05D000156 ORTHO05D001290 1.9e-08 62.4 76 52.6
Gohir.D04G008300 Gossypium hirsutum HOM05D000156 ORTHO05D001290 1.9e-08 62.4 76 52.6
Gorai.012G010000 Gossypium raimondii HOM05D000156 ORTHO05D001290 1.9e-08 62.4 76 52.6
Prupe.3G046800 Prunus persica HOM05D000156 ORTHO05D001290 1.9e-08 62.4 82 45.1
PGSC0003DMG400008203 Solanum tuberosum HOM05D000156 ORTHO05D001290 1.9e-08 62.4 69 47.8
A04p20250 Brassica napus HOM05D000156 ORTHO05D001290 2.5e-08 62.0 75 44.0
MD09G1190900 Malus domestica HOM05D000156 ORTHO05D001290 2.5e-08 62.0 74 45.9
Haze_15981 Corylus avellana HOM05D000156 ORTHO05D001290 4.2e-08 61.2 74 51.4
Duzib235G1491 Durio zibethinus HOM05D000156 ORTHO05D001290 4.2e-08 61.2 79 45.6
Lj5C42T4 Lonicera japonica HOM05D000156 ORTHO05D001290 4.2e-08 61.2 78 48.7
Nitab4.5_0004370g0040 Nicotiana tabacum HOM05D000156 ORTHO05D001290 4.2e-08 61.2 79 50.6
Sp5g27730 Schrenkiella parvula HOM05D000156 ORTHO05D001290 4.2e-08 61.2 69 50.7
THA.LOC104803724 Tarenaya hassleriana HOM05D000156 ORTHO05D001290 4.2e-08 61.2 67 46.3
Carub.0002s1952 Capsella rubella HOM05D000156 ORTHO05D001290 5.5e-08 60.8 69 50.7
AT1G72670 Arabidopsis thaliana HOM05D000156 ORTHO05D001290 7.2e-08 60.5 69 50.7
Manes.04G140900 Manihot esculenta HOM05D000156 ORTHO05D001290 7.2e-08 60.5 77 46.8
Sabra03G0023300 Salix brachista HOM05D000156 ORTHO05D001290 7.2e-08 60.5 77 48.1
Aa31LG4G3030 Aethionema arabicum HOM05D000156 ORTHO05D001290 9.4e-08 60.1 79 48.1
AL2G32350 Arabidopsis lyrata HOM05D000156 ORTHO05D001290 9.4e-08 60.1 69 50.7
BcaC08g46710 Brassica carinata HOM05D000156 ORTHO05D001290 9.4e-08 60.1 69 49.3
C06p46990 Brassica napus HOM05D000156 ORTHO05D001290 9.4e-08 60.1 69 49.3
BolC6t39739H Brassica oleracea HOM05D000156 ORTHO05D001290 9.4e-08 60.1 69 49.3
Cfa003564 Carpinus fangiana HOM05D000521 ORTHO05D000384 1.2e-07 59.7 74 48.6
CsaV3_7G034710 Cucumis sativus L. HOM05D000156 ORTHO05D001290 1.2e-07 59.7 81 46.9
Nitab4.5_0007622g0010 Nicotiana tabacum HOM05D000156 ORTHO05D001290 1.2e-07 59.7 72 51.4
BcaB03g15006 Brassica carinata HOM05D000156 ORTHO05D001290 1.6e-07 59.3 69 49.3
CARHR065590 Cardamine hirsuta HOM05D000156 ORTHO05D001290 1.6e-07 59.3 69 49.3
Thhalv10018619m.g Eutrema salsugineum HOM05D000156 ORTHO05D001290 1.6e-07 59.3 69 49.3
Lj5g0009584 Lotus japonicus HOM05D000156 ORTHO05D001290 1.6e-07 59.3 76 38.2
Oeu002497.1 Olea europaea HOM05D000156 ORTHO05D001290 1.6e-07 59.3 71 46.5
Solyc08g062940.4 Solanum lycopersicum HOM05D000156 ORTHO05D001290 1.6e-07 59.3 69 44.9
Sopen08g018490 Solanum pennellii HOM05D000156 ORTHO05D001290 1.6e-07 59.3 69 44.9
HPP92_000606 Vanilla planifolia HOM05D000156 ORTHO05D001290 1.6e-07 59.3 71 47.9
A07p38830 Brassica napus HOM05D000156 ORTHO05D001290 2.1e-07 58.9 69 47.8
BraA07t31437Z Brassica rapa HOM05D000156 ORTHO05D001290 2.1e-07 58.9 69 47.8
Oeu039950.1 Olea europaea HOM05D000156 ORTHO05D024717 2.1e-07 58.9 77 48.1
CAN.G862.8 Capsicum annuum HOM05D000156 ORTHO05D001290 2.7e-07 58.5 72 50.0
Cc04_g01760 Coffea canephora HOM05D000156 ORTHO05D001290 2.7e-07 58.5 70 48.6
MELO3C024381.2 Cucumis melo HOM05D000156 ORTHO05D001290 3.6e-07 58.2 81 45.7
Hund19441 Selenicereus undatus HOM05D000156 ORTHO05D001290 4.7e-07 57.8 77 41.6
MSTRG.9503 Avicennia marina HOM05D000156 ORTHO05D001290 6.1e-07 57.4 72 44.4
Lalb_Chr14g0366371 Lupinus albus HOM05D000156 ORTHO05D001290 6.1e-07 57.4 68 48.5
SEGI_34143 Sequoiadendron giganteum HOM05D000156 ORTHO05D001290 6.1e-07 57.4 81 40.7
Solyc03g121760.3 Solanum lycopersicum HOM05D000156 ORTHO05D001290 6.1e-07 57.4 70 48.6
TAR636G3425 Trochodendron aralioides HOM05D000156 ORTHO05D001290 6.1e-07 57.4 50 64.0
SGA_v2.0_scaffold4G02045 Striga asiatica HOM05D000156 ORTHO05D001290 1.0e-06 56.6 72 38.9
BcaB06g29601 Brassica carinata HOM05D000156 ORTHO05D001290 1.4e-06 56.2 67 43.3
CSS0020649 Camellia sinensis var. sinensis HOM05D000156 ORTHO05D001290 1.4e-06 56.2 75 45.3
Manes.11G024600 Manihot esculenta HOM05D000156 ORTHO05D001290 1.4e-06 56.2 66 50.0
Sopen03g040570 Solanum pennellii HOM05D000156 ORTHO05D001290 1.4e-06 56.2 70 47.1
PGSC0003DMG400002492 Solanum tuberosum HOM05D000156 ORTHO05D001290 1.8e-06 55.8 70 47.1
Glyma.14G097000 Glycine max HOM05D000156 ORTHO05D001290 2.3e-06 55.5 70 42.9
Glyma.17G227400 Glycine max HOM05D000156 ORTHO05D001290 2.3e-06 55.5 69 40.6
RcHm_v2.0_Chr2g0143711 Rosa chinensis HOM05D000156 ORTHO05D001290 2.3e-06 55.5 67 46.3
SalBow7G3584 Salvia bowleyana HOM05D000156 ORTHO05D001290 2.3e-06 55.5 71 42.3
CiPaw.01G223300 Carya illinoinensis HOM05D000156 ORTHO05D001290 3.0e-06 55.1 68 48.5
ClCG09G000770 Citrullus lanatus HOM05D000156 ORTHO05D001290 3.0e-06 55.1 78 47.4
Eucgr.F03144 Eucalyptus grandis HOM05D000156 ORTHO05D001290 3.0e-06 55.1 51 54.9
Gohir.A05G135900 Gossypium hirsutum HOM05D000156 ORTHO05D001290 3.0e-06 55.1 71 46.5
Oeu027295.2 Olea europaea HOM05D000156 ORTHO05D001290 3.0e-06 55.1 83 39.8
Phvul.001G037201 Phaseolus vulgaris HOM05D000156 ORTHO05D001290 3.0e-06 55.1 70 42.9
VMungo0647G2340 Vigna mungo HOM05D000156 ORTHO05D001290 3.0e-06 55.1 69 39.1
Gohir.D05G137900 Gossypium hirsutum HOM05D000156 ORTHO05D001290 4.0e-06 54.7 71 47.9
Gorai.009G142300 Gossypium raimondii HOM05D000156 ORTHO05D001290 4.0e-06 54.7 71 47.9
PGR119G2446 Punica granatum HOM05D000156 ORTHO05D001290 4.0e-06 54.7 85 42.4
vmacro23047 Vaccinium macrocarpon HOM05D000156 ORTHO05D001290 4.0e-06 54.7 70 51.4
Atru.chr1.3783 Acer truncatum HOM05D000156 ORTHO05D001290 5.2e-06 54.3 68 47.1
DCAR_016145 Daucus carota HOM05D000156 ORTHO05D001290 5.2e-06 54.3 78 33.3
FAN02G1906 Fragaria x ananassa HOM05D000156 ORTHO05D001290 5.2e-06 54.3 70 44.3
FAN05G1810 Fragaria x ananassa HOM05D000156 ORTHO05D001290 5.2e-06 54.3 70 44.3
MBI01_g21129_MAGBIO Magnolia biondii HOM05D000521 ORTHO05D000384 5.2e-06 54.3 31 74.2
THA.LOC104812241 Tarenaya hassleriana HOM05D000156 ORTHO05D001290 5.2e-06 54.3 74 44.6
Zm00001eb294360 Zea mays HOM05D000156 ORTHO05D001290 5.2e-06 54.3 83 38.6
arahy.Tifrunner.gnm1.ann1.RNX0AV Arachis hypogaea HOM05D000156 ORTHO05D001290 8.8e-06 53.5 79 38.0
Lalb_Chr24g0396451 Lupinus albus HOM05D000156 ORTHO05D001290 8.8e-06 53.5 70 38.6
QL05p010081 Quercus lobata HOM05D000156 ORTHO05D001290 8.8e-06 53.5 81 45.7


User provided reference genes

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