Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G1211 Trochodendron aralioides HOM05D005900 ORTHO05D007306 1.1e-133 479.9 249 100.0
TAR629G1598 Trochodendron aralioides HOM05D005900 ORTHO05D007306 1.5e-72 276.9 247 66.4
Dinv35828 Davidia involucrata HOM05D005900 ORTHO05D007306 1.9e-67 260.0 247 59.9
Hma1.2p1_1494F.1_g286930 Hydrangea macrophylla HOM05D005900 ORTHO05D007306 7.6e-61 238.0 261 53.3
Oeu055297.1 Olea europaea HOM05D005900 ORTHO05D007306 8.4e-60 234.6 247 57.1
GSVIVG01001102001 Vitis vinifera HOM05D005900 ORTHO05D007306 5.1e-57 225.3 247 54.3
Rhsim12G0016500 Rhododendron simsii HOM05D005900 ORTHO05D007306 1.1e-56 224.2 247 53.8
vmacro15379 Vaccinium macrocarpon HOM05D005900 ORTHO05D007306 1.1e-56 224.2 271 52.4
CSS0005312 Camellia sinensis var. sinensis HOM05D005900 ORTHO05D007306 4.3e-56 222.2 249 55.4
Dinv16498 Davidia involucrata HOM05D005900 ORTHO05D007306 4.8e-55 218.8 226 58.8
QL03p048972 Quercus lobata HOM05D005900 ORTHO05D007306 8.1e-55 218.0 251 52.6
MBI11_g07033_MAGBIO Magnolia biondii HOM05D005900 ORTHO05D007306 6.4e-52 208.4 235 56.2
Cc04_g15880 Coffea canephora HOM05D005900 ORTHO05D007306 5.5e-51 205.3 248 51.6
Atru.chr12.1436 Acer truncatum HOM05D005900 ORTHO05D007306 1.6e-50 203.8 248 51.6
PGR102G3094 Punica granatum HOM05D005900 ORTHO05D007306 2.1e-50 203.4 246 48.8
Solyc09g009850.4 Solanum lycopersicum HOM05D005900 ORTHO05D007306 3.5e-50 202.6 245 50.6
Nitab4.5_0000059g0460 Nicotiana tabacum HOM05D005900 ORTHO05D007306 4.6e-50 202.2 248 52.0
Sopen09g004610 Solanum pennellii HOM05D005900 ORTHO05D007306 1.0e-49 201.1 246 52.0
PGSC0003DMG400022718 Solanum tuberosum HOM05D005900 ORTHO05D007306 1.0e-49 201.1 252 50.0
PGSC0003DMG400008953 Solanum tuberosum HOM05D005900 ORTHO05D007306 1.8e-49 200.3 245 49.4
CANSAT80G1963 Cannabis sativa HOM05D005900 ORTHO05D007306 2.3e-49 199.9 245 51.4
CANSAT80G1771 Cannabis sativa HOM05D005900 ORTHO05D007306 5.1e-49 198.7 245 51.0
Nitab4.5_0000191g0220 Nicotiana tabacum HOM05D005900 ORTHO05D007306 1.9e-48 196.8 248 50.8
DCAR_030841 Daucus carota HOM05D005900 ORTHO05D007306 1.3e-47 194.1 206 54.4
Peaxi162Scf00698g00117 Petunia axillaris HOM05D005900 ORTHO05D007306 1.6e-47 193.7 230 52.6
Solyc01g008760.4 Solanum lycopersicum HOM05D005900 ORTHO05D007306 1.6e-47 193.7 249 48.2
Oeu001539.2 Olea europaea HOM05D005900 ORTHO05D007306 4.8e-47 192.2 295 46.1
CiPaw.05G100400 Carya illinoinensis HOM05D005900 ORTHO05D007306 1.4e-46 190.7 229 52.8
Lsat_1_v5_gn_2_95001 Lactuca sativa HOM05D005900 ORTHO05D007306 4.0e-46 189.1 183 54.6
CsaV3_4G033440 Cucumis sativus L. HOM05D005900 ORTHO05D007306 6.9e-46 188.3 250 49.2
MSTRG.22403 Avicennia marina HOM05D005900 ORTHO05D007306 9.0e-46 188.0 251 47.8
CiPaw.03G184600 Carya illinoinensis HOM05D005900 ORTHO05D007306 3.4e-45 186.0 189 56.6
Ciclev10005823m.g Citrus clementina HOM05D005900 ORTHO05D007306 1.3e-44 184.1 245 48.6
vmacro01013 Vaccinium macrocarpon HOM05D005900 ORTHO05D007306 1.3e-44 184.1 297 44.4
Sabra01G0047700 Salix brachista HOM05D005900 ORTHO05D007306 1.7e-44 183.7 236 51.7
Potri.001G068500 Populus trichocarpa HOM05D005900 ORTHO05D007306 2.9e-44 183.0 233 51.9
TWI36G0396 Tripterygium wilfordii HOM05D005900 ORTHO05D007306 2.9e-44 183.0 220 48.2
Prupe.1G213900 Prunus persica HOM05D005900 ORTHO05D007306 8.4e-44 181.4 226 50.9
Cpa.g.sc36.199 Carica papaya HOM05D005900 ORTHO05D007306 1.4e-43 180.6 253 46.6
Eucgr.B02910 Eucalyptus grandis HOM05D005900 ORTHO05D007306 3.2e-43 179.5 258 46.9
Sc06g0007790 Simmondsia chinensis HOM05D005900 ORTHO05D007306 3.2e-43 179.5 242 48.8
CDE09G0879 Ceratophyllum demersum HOM05D005900 ORTHO05D007306 2.1e-42 176.8 240 47.9
Cfa010215 Carpinus fangiana HOM05D005900 ORTHO05D007306 1.8e-41 173.7 253 47.4
COL.COLO4_27171 Corchorus olitorius HOM05D005900 ORTHO05D007306 1.8e-41 173.7 252 46.4
SGA_v2.0_scaffold154G37193 Striga asiatica HOM05D005900 ORTHO05D007306 1.8e-41 173.7 250 46.4
Eucgr.E01503 Eucalyptus grandis HOM05D005900 ORTHO05D007306 6.7e-41 171.8 249 46.6
Haze_24259 Corylus avellana HOM05D005900 ORTHO05D007306 1.1e-40 171.0 256 46.1
Peaxi162Scf00079g01513 Petunia axillaris HOM05D005900 ORTHO05D007306 1.5e-40 170.6 268 44.8
ClCG11G017800 Citrullus lanatus HOM05D005900 ORTHO05D007306 1.9e-40 170.2 252 45.6
SalBow2G0170 Salvia bowleyana HOM05D005900 ORTHO05D007306 2.5e-40 169.9 199 47.7
SGA_v2.0_scaffold28G11983 Striga asiatica HOM05D005900 ORTHO05D007306 7.4e-40 168.3 250 47.2
Cfa011664 Carpinus fangiana HOM05D005900 ORTHO05D007306 2.8e-39 166.4 250 45.6
RcHm_v2.0_Chr4g0428761 Rosa chinensis HOM05D005900 ORTHO05D007306 2.8e-39 166.4 247 43.7
Hund20854 Selenicereus undatus HOM05D005900 ORTHO05D007306 2.8e-39 166.4 243 45.3
Thecc.02G191100 Theobroma cacao HOM05D005900 ORTHO05D007306 3.7e-39 166.0 250 46.0
Gorai.002G021100 Gossypium raimondii HOM05D005900 ORTHO05D007306 2.4e-38 163.3 243 44.0
AUR62006518 Chenopodium quinoa HOM05D005900 ORTHO05D007306 4.1e-38 162.5 242 45.5
Sed0015511 Sechium edule HOM05D005900 ORTHO05D007306 9.0e-38 161.4 248 45.6
Migut.C01115 Erythranthe guttata HOM05D005900 ORTHO05D007306 2.0e-37 160.2 241 43.6
FvH4_4g22530 Fragaria vesca HOM05D005900 ORTHO05D007306 2.0e-37 160.2 240 44.2
FAN12G4206 Fragaria x ananassa HOM05D005900 ORTHO05D007306 2.0e-37 160.2 240 44.2
TWI18G0365 Tripterygium wilfordii HOM05D005900 ORTHO05D007306 3.4e-37 159.5 235 44.3
FAN07G0479 Fragaria x ananassa HOM05D005900 ORTHO05D007306 4.5e-37 159.1 238 42.4
Gohir.D01G018900 Gossypium hirsutum HOM05D005900 ORTHO05D007306 4.5e-37 159.1 243 43.2
AUR62025013 Chenopodium quinoa HOM05D005900 ORTHO05D007306 7.6e-37 158.3 242 45.0
PSO170G6181 Papaver somniferum HOM05D005900 ORTHO05D007306 7.6e-37 158.3 225 45.8
Os01g0259900 Oryza sativa ssp. japonica HOM05D005900 ORTHO05D007306 1.0e-36 157.9 246 42.3
Migut.C00405 Erythranthe guttata HOM05D005900 ORTHO05D007306 1.3e-36 157.5 242 43.8
Gohir.A01G020300 Gossypium hirsutum HOM05D005900 ORTHO05D007306 1.7e-36 157.1 201 46.8
FAN17G1441 Fragaria x ananassa HOM05D005900 ORTHO05D007306 3.8e-36 156.0 147 54.4
ECA238G4295 Erigeron canadensis HOM05D005900 ORTHO05D007306 6.5e-36 155.2 195 49.2
CSS0033783 Camellia sinensis var. sinensis HOM05D005900 ORTHO05D007306 8.5e-36 154.8 178 56.2
MD13G1131700 Malus domestica HOM05D005900 ORTHO05D007306 1.4e-35 154.1 222 51.4
EL10Ac1g01696 Beta vulgaris HOM05D005900 ORTHO05D007306 2.5e-35 153.3 237 43.0
MD16G1142000 Malus domestica HOM05D005900 ORTHO05D007306 2.5e-35 153.3 222 50.0
PSO017G3279 Papaver somniferum HOM05D005900 ORTHO05D007306 1.6e-34 150.6 215 46.0
Ca_13888_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 3.6e-34 149.4 210 43.8
Os08g0422600 Oryza sativa ssp. japonica HOM05D005900 ORTHO05D007306 4.6e-34 149.1 237 44.3
Ca_23210_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 3.0e-33 146.4 210 42.9
Zm00001eb127900 Zea mays HOM05D005900 ORTHO05D007306 5.7e-32 142.1 244 43.0
Lalb_Chr15g0079851 Lupinus albus HOM05D005900 ORTHO05D007306 5.3e-30 135.6 244 39.8
THA.LOC104799437 Tarenaya hassleriana HOM05D005900 ORTHO05D007306 9.1e-30 134.8 206 42.7
arahy.Tifrunner.gnm1.ann1.UQH0GN Arachis hypogaea HOM05D005900 ORTHO05D007306 4.5e-29 132.5 234 38.0
Medtr8g012410 Medicago truncatula HOM05D005900 ORTHO05D007306 1.0e-28 131.3 210 42.4
Aa31LG1G17260 Aethionema arabicum HOM05D005900 ORTHO05D007306 1.3e-28 131.0 241 40.7
arahy.Tifrunner.gnm1.ann1.5NZU5R Arachis hypogaea HOM05D005900 ORTHO05D007306 3.8e-28 129.4 251 37.1
Lj3g0021746 Lotus japonicus HOM05D005900 ORTHO05D007306 3.8e-28 129.4 244 37.3
Duzib052G0736 Durio zibethinus HOM05D005900 ORTHO05D007306 5.0e-28 129.0 257 38.9
Psat4g204640 Pisum sativum HOM05D005900 ORTHO05D007306 2.5e-27 126.7 241 39.0
Manes.08G100300 Manihot esculenta HOM05D005900 ORTHO05D007306 1.2e-26 124.4 154 46.8
Glyma.13G175800 Glycine max HOM05D005900 ORTHO05D007306 4.7e-26 122.5 245 38.8
Glyma.07G200400 Glycine max HOM05D005900 ORTHO05D007306 2.3e-25 120.2 204 42.6
TPR.G16445 Trifolium pratense HOM05D005900 ORTHO05D007306 2.3e-25 120.2 244 38.5
VMungo0331G1117 Vigna mungo HOM05D005900 ORTHO05D007306 6.7e-25 118.6 244 40.2
VMungo0251G3272 Vigna mungo HOM05D005900 ORTHO05D007306 8.8e-25 118.2 244 38.5
BolC6t39862H Brassica oleracea HOM05D005900 ORTHO05D007306 4.4e-24 115.9 108 52.8
BcaC08g46818 Brassica carinata HOM05D005900 ORTHO05D007306 5.7e-24 115.5 108 52.8
Lj6g0004130 Lotus japonicus HOM05D005900 ORTHO05D007306 5.7e-24 115.5 245 39.2
BraA02t09265Z Brassica rapa HOM05D005900 ORTHO05D007306 1.3e-23 114.4 216 37.0
A02p43400 Brassica napus HOM05D005900 ORTHO05D007306 3.7e-23 112.8 216 36.6
Cc04_g15860 Coffea canephora HOM05D005900 ORTHO05D007306 3.7e-23 112.8 78 65.4
C02p63500 Brassica napus HOM05D005900 ORTHO05D007306 1.8e-22 110.5 222 37.4
BcaC03g18270 Brassica carinata HOM05D005900 ORTHO05D007306 4.1e-22 109.4 241 34.9
Sp2g27740 Schrenkiella parvula HOM05D005900 ORTHO05D007306 4.1e-22 109.4 241 36.9
BolC2t12415H Brassica oleracea HOM05D005900 ORTHO05D007306 7.0e-22 108.6 189 40.2
C03p61480 Brassica napus HOM05D005900 ORTHO05D007306 9.1e-22 108.2 205 36.1
BcaB07g29751 Brassica carinata HOM05D005900 ORTHO05D007306 1.2e-21 107.8 201 38.3
Ca_13890_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 2.6e-21 106.7 99 52.5
BcaB04g19984 Brassica carinata HOM05D005900 ORTHO05D007306 3.4e-21 106.3 109 50.5
Thhalv10004934m.g Eutrema salsugineum HOM05D005900 ORTHO05D007306 1.0e-20 104.8 187 39.0
ATR0582G041 Amborella trichopoda HOM05D005900 ORTHO05D007306 1.7e-20 104.0 203 38.9
Aqoxy4G02969 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 1.7e-20 104.0 211 34.6
Phvul.002G231200 Phaseolus vulgaris HOM05D005900 ORTHO05D007306 1.9e-19 100.5 244 36.5
unitig_747.g21266 Utricularia gibba HOM05D005900 ORTHO05D007306 8.0e-18 95.1 97 48.5
MELO3C032361.2 Cucumis melo HOM05D005900 ORTHO05D007306 5.2e-17 92.4 192 40.6
AL8G42100 Arabidopsis lyrata HOM05D005900 ORTHO05D007306 3.3e-16 89.7 244 34.0
Atru.chr12.1335 Acer truncatum HOM05D005900 ORTHO05D007306 8.2e-15 85.1 65 61.5
Aqoxy83s001 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 1.1e-14 84.7 158 38.6
Aqoxy4G03322 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 3.1e-14 83.2 158 38.0
AT5G64680 Arabidopsis thaliana HOM05D005900 ORTHO05D007306 6.5e-12 75.5 168 31.5
Aqoxy2G04193 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 1.6e-10 70.9 137 38.7
TAR371G1010 Trochodendron aralioides HOM05D005900 ORTHO05D414540 1.0e-09 68.2 43 76.7
Carub.0008s2548 Capsella rubella HOM05D005900 ORTHO05D007306 1.8e-09 67.4 189 30.2
Haze_23070 Corylus avellana HOM05D005900 ORTHO05D007306 3.0e-09 66.6 201 37.3
Nn3g20876 Nelumbo nucifera HOM05D005900 ORTHO05D007306 5.2e-09 65.9 40 70.0
SEGI_10970 Sequoiadendron giganteum HOM05D005900 ORTHO05D007306 5.7e-08 62.4 247 29.6
CARHR278660 Cardamine hirsuta HOM05D005900 ORTHO05D007306 5.3e-06 55.8 161 32.3


User provided reference genes

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