Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G1135 Trochodendron aralioides HOM05D004550 ORTHO05D005340 1.2e-115 419.9 209 100.0
TAR629G0577 Trochodendron aralioides HOM05D004550 ORTHO05D005340 2.1e-88 329.3 208 81.2
TAR374G1091 Trochodendron aralioides HOM05D004550 ORTHO05D005340 1.3e-82 310.1 186 83.3
Nn4g23307 Nelumbo nucifera HOM05D004550 ORTHO05D005340 3.8e-82 308.5 208 76.0
Nn3g17356 Nelumbo nucifera HOM05D004550 ORTHO05D005340 1.3e-77 293.5 208 73.1
Aqoxy3G03523 Aquilegia oxysepala HOM05D004550 ORTHO05D005340 1.4e-76 290.0 210 71.4
Dinv34106 Davidia involucrata HOM05D004550 ORTHO05D005340 1.4e-76 290.0 205 72.7
MBI19_g03106_MAGBIO Magnolia biondii HOM05D004550 ORTHO05D005340 9.2e-76 287.3 209 72.2
CSS0021997 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 9.5e-73 277.3 204 69.1
CSS0045485 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 9.5e-73 277.3 204 69.1
Cfa008917 Carpinus fangiana HOM05D004550 ORTHO05D005340 2.1e-72 276.2 205 69.8
PSO063G6186 Papaver somniferum HOM05D004550 ORTHO05D005340 2.1e-72 276.2 204 71.6
PSO063G5570 Papaver somniferum HOM05D004550 ORTHO05D005340 4.7e-72 275.0 204 71.6
Rhsim12G0077600 Rhododendron simsii HOM05D004550 ORTHO05D005340 4.7e-72 275.0 202 69.8
CANSAT64G2188 Cannabis sativa HOM05D004550 ORTHO05D005340 8.0e-72 274.2 206 67.5
CiPaw.06G089400 Carya illinoinensis HOM05D004550 ORTHO05D005340 2.3e-71 272.7 202 70.3
GSVIVG01011473001 Vitis vinifera HOM05D004550 ORTHO05D005340 4.0e-71 271.9 210 68.1
Nitab4.5_0000334g0090 Nicotiana tabacum HOM05D004550 ORTHO05D005340 1.2e-70 270.4 206 66.0
Hma1.2p1_0354F.1_g133690 Hydrangea macrophylla HOM05D004550 ORTHO05D005340 2.0e-70 269.6 204 68.6
vmacro01339 Vaccinium macrocarpon HOM05D004550 ORTHO05D005340 2.0e-70 269.6 201 68.2
CiPaw.05G128700 Carya illinoinensis HOM05D004550 ORTHO05D005340 3.4e-70 268.9 202 69.3
Cpa.g.sc1.80 Carica papaya HOM05D004550 ORTHO05D005340 1.3e-69 266.9 181 74.6
Nitab4.5_0011843g0010 Nicotiana tabacum HOM05D004550 ORTHO05D005340 1.7e-69 266.5 206 66.0
QL03p070023 Quercus lobata HOM05D004550 ORTHO05D005340 2.2e-69 266.2 206 67.0
GSVIVG01001334001 Vitis vinifera HOM05D004550 ORTHO05D005340 2.9e-69 265.8 203 69.0
Migut.L01230 Erythranthe guttata HOM05D004550 ORTHO05D005340 3.7e-69 265.4 204 67.2
FvH4_4g30590 Fragaria vesca HOM05D004550 ORTHO05D005340 4.9e-69 265.0 198 72.7
Phvul.002G090800 Phaseolus vulgaris HOM05D004550 ORTHO05D005340 4.9e-69 265.0 206 67.0
Cc11_g12470 Coffea canephora HOM05D004550 ORTHO05D005340 6.4e-69 264.6 182 73.6
Lalb_Chr17g0340931 Lupinus albus HOM05D004550 ORTHO05D005340 8.3e-69 264.2 204 67.2
VMungo1215G2831 Vigna mungo HOM05D004550 ORTHO05D005340 8.3e-69 264.2 206 66.5
Atru.chr11.1702 Acer truncatum HOM05D004550 ORTHO05D005340 1.1e-68 263.8 204 69.1
FAN17G0531 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.1e-68 263.8 198 72.2
RcHm_v2.0_Chr4g0438981 Rosa chinensis HOM05D004550 ORTHO05D005340 1.4e-68 263.5 198 71.7
Haze_11945 Corylus avellana HOM05D004550 ORTHO05D005340 1.9e-68 263.1 182 72.5
Manes.05G107100 Manihot esculenta HOM05D004550 ORTHO05D005340 1.9e-68 263.1 184 72.8
MSTRG.7770 Avicennia marina HOM05D004550 ORTHO05D005340 4.1e-68 261.9 205 64.9
Duzib268G1083 Durio zibethinus HOM05D004550 ORTHO05D005340 4.1e-68 261.9 204 66.7
Eucgr.B03186 Eucalyptus grandis HOM05D004550 ORTHO05D005340 4.1e-68 261.9 180 75.0
Glyma.02G112600 Glycine max HOM05D004550 ORTHO05D005340 9.2e-68 260.8 183 70.5
Gohir.A12G162200 Gossypium hirsutum HOM05D004550 ORTHO05D005340 1.6e-67 260.0 199 67.3
Gohir.D12G165500 Gossypium hirsutum HOM05D004550 ORTHO05D005340 1.6e-67 260.0 199 67.8
Gorai.008G178200 Gossypium raimondii HOM05D004550 ORTHO05D005340 1.6e-67 260.0 199 67.8
FAN07G0354 Fragaria x ananassa HOM05D004550 ORTHO05D005340 4.6e-67 258.5 198 70.7
COL.COLO4_27949 Corchorus olitorius HOM05D004550 ORTHO05D005340 1.0e-66 257.3 183 72.1
Actinidia31956 Actinidia chinensis HOM05D004550 ORTHO05D005340 1.3e-66 256.9 206 65.5
Peaxi162Scf00364g00223 Petunia axillaris HOM05D004550 ORTHO05D005340 2.3e-66 256.1 204 63.7
Thecc.02G338200 Theobroma cacao HOM05D004550 ORTHO05D005340 3.0e-66 255.8 204 67.2
Duzib251G0963 Durio zibethinus HOM05D004550 ORTHO05D005340 3.9e-66 255.4 183 73.8
CAN.G1200.3 Capsicum annuum HOM05D004550 ORTHO05D005340 5.0e-66 255.0 204 61.8
Sabra08G0069100 Salix brachista HOM05D004550 ORTHO05D005340 5.0e-66 255.0 210 65.2
DCAR_030983 Daucus carota HOM05D004550 ORTHO05D005340 8.6e-66 254.2 181 69.6
Ca_27938_v3 Cicer arietinum L. HOM05D004550 ORTHO05D005340 1.1e-65 253.8 205 66.8
TWI31G0520 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 1.1e-65 253.8 200 69.5
Lj2g0016497 Lotus japonicus HOM05D004550 ORTHO05D005340 1.5e-65 253.4 206 65.5
Potri.008G092300 Populus trichocarpa HOM05D004550 ORTHO05D005340 1.5e-65 253.4 203 66.0
PGSC0003DMG400028333 Solanum tuberosum HOM05D004550 ORTHO05D005340 1.5e-65 253.4 204 61.8
Glyma.01G054200 Glycine max HOM05D004550 ORTHO05D005340 1.9e-65 253.1 206 64.1
Solyc05g012710.4 Solanum lycopersicum HOM05D004550 ORTHO05D005340 2.5e-65 252.7 204 61.3
Sopen05g007540 Solanum pennellii HOM05D004550 ORTHO05D005340 2.5e-65 252.7 204 61.8
Oeu021093.1 Olea europaea HOM05D004550 ORTHO05D005340 3.3e-65 252.3 169 74.6
Actinidia19927 Actinidia chinensis HOM05D004550 ORTHO05D005340 5.6e-65 251.5 207 65.2
Ciclev10032704m.g Citrus clementina HOM05D004550 ORTHO05D005340 5.6e-65 251.5 191 69.6
Prupe.1G281100 Prunus persica HOM05D004550 ORTHO05D005340 9.5e-65 250.8 178 73.0
Potri.010G162600 Populus trichocarpa HOM05D004550 ORTHO05D005340 1.2e-64 250.4 202 66.8
Sabra10G0123800 Salix brachista HOM05D001252 ORTHO05D005340 1.2e-64 250.4 185 70.8
arahy.Tifrunner.gnm1.ann1.M1L69X Arachis hypogaea HOM05D004550 ORTHO05D005340 2.8e-64 249.2 208 63.9
FAN12G3802 Fragaria x ananassa HOM05D004550 ORTHO05D005340 2.8e-64 249.2 190 71.6
FAN22G1576 Fragaria x ananassa HOM05D004550 ORTHO05D005340 6.2e-64 248.1 196 69.4
SGA_v2.0_scaffold16G07747 Striga asiatica HOM05D004550 ORTHO05D005340 6.2e-64 248.1 171 72.5
PGR102G3210 Punica granatum HOM05D004550 ORTHO05D005340 8.0e-64 247.7 182 70.3
arahy.Tifrunner.gnm1.ann1.F9ESEJ Arachis hypogaea HOM05D004550 ORTHO05D005340 1.1e-63 247.3 206 64.6
Manes.05G087100 Manihot esculenta HOM05D004550 ORTHO05D005340 1.1e-63 247.3 175 73.1
ATR0730G201 Amborella trichopoda HOM05D004550 ORTHO05D005340 1.4e-63 246.9 184 70.1
DCAR_007179 Daucus carota HOM05D004550 ORTHO05D005340 1.8e-63 246.5 174 71.8
Lalb_Chr04g0255821 Lupinus albus HOM05D004550 ORTHO05D005340 1.8e-63 246.5 204 63.2
SGA_v2.0_scaffold36G14423 Striga asiatica HOM05D004550 ORTHO05D005340 1.8e-63 246.5 184 69.0
CsaV3_5G025150 Cucumis sativus L. HOM05D004550 ORTHO05D005340 3.1e-63 245.7 202 64.4
TWI79G1514 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 4.0e-63 245.4 205 65.4
ClCG09G021950 Citrullus lanatus HOM05D004550 ORTHO05D005340 5.2e-63 245.0 202 63.9
ECA233G5814 Erigeron canadensis HOM05D004550 ORTHO05D005340 5.2e-63 245.0 180 67.8
EL10Ac6g13282 Beta vulgaris HOM05D004550 ORTHO05D005340 6.8e-63 244.6 205 62.4
MELO3C002974.2 Cucumis melo HOM05D004550 ORTHO05D005340 8.9e-63 244.2 201 64.7
Ah.03g134600 Amaranthus hybridus HOM05D004550 ORTHO05D005340 2.0e-62 243.0 206 62.1
Ah.02g129300 Amaranthus hybridus HOM05D004550 ORTHO05D005340 2.6e-62 242.7 168 73.2
Sed0017620 Sechium edule HOM05D004550 ORTHO05D005340 2.6e-62 242.7 202 64.9
TPR.G30749 Trifolium pratense HOM05D004550 ORTHO05D005340 2.6e-62 242.7 206 62.6
CDE04G2021 Ceratophyllum demersum HOM05D004550 ORTHO05D005340 3.4e-62 242.3 221 60.2
RcHm_v2.0_Chr2g0166971 Rosa chinensis HOM05D004550 ORTHO05D005340 3.4e-62 242.3 171 70.2
FvH4_6g47773 Fragaria vesca HOM05D004550 ORTHO05D005340 1.7e-61 240.0 184 66.3
FAN14G0263 Fragaria x ananassa HOM05D004550 ORTHO05D005340 4.9e-61 238.4 184 65.8
HanXRQChr12g0362721 Helianthus annuus HOM05D004550 ORTHO05D005340 4.9e-61 238.4 183 64.5
Medtr5g043020 Medicago truncatula HOM05D004550 ORTHO05D005340 4.9e-61 238.4 161 75.8
Sp5g24440 Schrenkiella parvula HOM05D004550 ORTHO05D005340 6.4e-61 238.0 197 65.0
unitig_21.g20859 Utricularia gibba HOM05D004550 ORTHO05D005340 1.1e-60 237.3 183 65.0
Thhalv10019103m.g Eutrema salsugineum HOM05D004550 ORTHO05D005340 1.4e-60 236.9 202 62.4
Psat2g127440 Pisum sativum HOM05D004550 ORTHO05D005340 3.2e-60 235.7 207 60.4
CARHR062270 Cardamine hirsuta HOM05D004550 ORTHO05D005340 4.1e-60 235.3 202 63.4
Lsat_1_v5_gn_8_46800 Lactuca sativa HOM05D004550 ORTHO05D005340 5.4e-60 235.0 179 65.4
A02p15870 Brassica napus HOM05D004550 ORTHO05D005340 7.0e-60 234.6 161 75.2
BolC2t08705H Brassica oleracea HOM05D004550 ORTHO05D005340 9.2e-60 234.2 156 76.9
FAN05G1708 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.2e-59 233.8 179 67.6
BcaB05g24446 Brassica carinata HOM05D004550 ORTHO05D005340 1.6e-59 233.4 156 76.3
C02p26330 Brassica napus HOM05D004550 ORTHO05D005340 1.6e-59 233.4 156 76.9
PSO478G0019 Papaver somniferum HOM05D004550 ORTHO05D005340 2.1e-59 233.0 206 61.7
Carub.0002s1599 Capsella rubella HOM05D004550 ORTHO05D005340 3.5e-59 232.3 202 61.4
Hund05856 Selenicereus undatus HOM05D004550 ORTHO05D005340 6.0e-59 231.5 200 60.5
Sc04g0007790 Simmondsia chinensis HOM05D004550 ORTHO05D005340 7.8e-59 231.1 205 62.4
AT1G69390 Arabidopsis thaliana HOM05D004550 ORTHO05D005340 5.1e-58 228.4 202 61.9
Prupe.3G261900 Prunus persica HOM05D004550 ORTHO05D005340 8.6e-58 227.6 193 62.2
A07p35690 Brassica napus HOM05D004550 ORTHO05D005340 1.9e-57 226.5 157 75.2
BraA07t31157Z Brassica rapa HOM05D004550 ORTHO05D005340 1.9e-57 226.5 157 75.2
HanXRQChr08g0210541 Helianthus annuus HOM05D004550 ORTHO05D005340 2.5e-57 226.1 201 60.2
HanXRQChr08g0211031 Helianthus annuus HOM05D004550 ORTHO05D005340 2.5e-57 226.1 201 60.2
AL2G28500 Arabidopsis lyrata HOM05D004550 ORTHO05D005340 3.3e-57 225.7 156 75.0
C06p40530 Brassica napus HOM05D004550 ORTHO05D005340 5.6e-57 224.9 157 74.5
BolC6t39378H Brassica oleracea HOM05D004550 ORTHO05D005340 5.6e-57 224.9 157 74.5
BcaB03g15897 Brassica carinata HOM05D004550 ORTHO05D005340 2.8e-56 222.6 152 75.0
BcaC03g15080 Brassica carinata HOM05D004550 ORTHO05D005340 6.2e-56 221.5 151 76.2
THA.LOC104822027 Tarenaya hassleriana HOM05D004550 ORTHO05D005340 6.2e-56 221.5 150 75.3
Aa31LG4G11470 Aethionema arabicum HOM05D004550 ORTHO05D005340 4.0e-55 218.8 196 61.7
HPP92_018458 Vanilla planifolia HOM05D004550 ORTHO05D005340 5.2e-55 218.4 176 64.8
MD09G1057200 Malus domestica HOM05D004550 ORTHO05D005340 8.9e-55 217.6 189 63.0
Potri.004G121000 Populus trichocarpa HOM05D004550 ORTHO05D005340 1.7e-53 213.4 151 72.8
HanXRQChr17g0545411 Helianthus annuus HOM05D004550 ORTHO05D005340 2.9e-53 212.6 168 66.1
Os12g0498400 Oryza sativa ssp. japonica HOM05D004550 ORTHO05D005340 3.2e-52 209.1 202 55.9
Sabra04G0067200 Salix brachista HOM05D004550 ORTHO05D005340 5.4e-52 208.4 148 70.3
MSTRG.729 Avicennia marina HOM05D004550 ORTHO05D005340 7.8e-51 204.5 135 74.8
AUR62032858 Chenopodium quinoa HOM05D004550 ORTHO05D005340 2.1e-48 196.4 204 52.5
AUR62005866 Chenopodium quinoa HOM05D004550 ORTHO05D005340 2.8e-48 196.1 204 52.5
Gohir.D02G127801 Gossypium hirsutum HOM05D004550 ORTHO05D005340 2.4e-47 193.0 204 52.9
Gorai.005G143600 Gossypium raimondii HOM05D004550 ORTHO05D005340 2.4e-47 193.0 204 52.9
SEGI_17925 Sequoiadendron giganteum HOM05D004550 ORTHO05D005340 8.9e-47 191.0 165 63.0
MELO3C012132.2 Cucumis melo HOM05D004550 ORTHO05D005340 2.2e-45 186.4 153 64.7
CsaV3_5G033110 Cucumis sativus L. HOM05D004550 ORTHO05D005340 1.4e-44 183.7 205 50.2
Zm00001eb409620 Zea mays HOM05D004550 ORTHO05D005340 7.1e-44 181.4 127 71.7
Sed0010995 Sechium edule HOM05D004550 ORTHO05D005340 3.3e-41 172.6 145 62.8
ClCG05G023910 Citrullus lanatus HOM05D004550 ORTHO05D005340 1.3e-40 170.6 154 61.0
Thecc.02G337600 Theobroma cacao HOM05D004550 ORTHO05D005340 3.4e-38 162.5 109 76.1
MD16G1066100 Malus domestica HOM05D004550 ORTHO05D005340 1.1e-36 157.5 98 81.6
Pp3c20_5010 Physcomitrium patens HOM05D004550 ORTHO05D005340 9.3e-36 154.5 151 58.9
Mapoly0021s0017 Marchantia polymorpha HOM05D004550 ORTHO05D005340 1.2e-35 154.1 111 74.8
Pp3c23_20800 Physcomitrium patens HOM05D004550 ORTHO05D005340 1.2e-35 154.1 149 59.1
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 3.0e-34 149.4 133 61.7
SMO356G0701 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 1.4e-31 140.6 123 61.8
SMO141G0150 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 1.8e-31 140.2 99 66.7
Pp3c9_20530 Physcomitrium patens HOM05D004550 ORTHO05D005340 9.0e-31 137.9 144 53.5
Actinidia33237 Actinidia chinensis HOM05D004550 ORTHO05D005340 2.0e-30 136.7 105 65.7
arahy.Tifrunner.gnm1.ann1.QAIU0T Arachis hypogaea HOM05D004550 ORTHO05D005340 1.1e-25 120.9 81 71.6
BcaC08g45895 Brassica carinata HOM05D004550 ORTHO05D005340 2.6e-22 109.8 71 80.3
C06p37000 Brassica napus HOM05D004550 ORTHO05D005340 1.6e-19 100.5 95 61.1
BolC6t38810H Brassica oleracea HOM05D004550 ORTHO05D005340 1.6e-19 100.5 95 61.1
BcaB03g15467 Brassica carinata HOM05D004550 ORTHO05D005340 2.7e-19 99.8 67 77.6
Potri.017G088401 Populus trichocarpa HOM05D004550 ORTHO05D005340 5.7e-17 92.0 68 64.7
PRCOL_00005365 Prasinoderma coloniale HOM05D004550 ORTHO05D005340 1.0e-13 81.3 139 34.5
Cre17.g720350 Chlamydomonas reinhardtii HOM05D004550 ORTHO05D005340 3.8e-13 79.3 94 43.6
MCO05G609 Micromonas commoda HOM05D004550 ORTHO05D005340 1.4e-12 77.4 108 41.7


User provided reference genes

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