Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G1106 Trochodendron aralioides HOM05D002902 ORTHO05D008465 2.0e-39 165.2 80 100.0
Nn4g23687 Nelumbo nucifera HOM05D002902 ORTHO05D008465 3.3e-18 94.7 60 76.7
Manes.01G021700 Manihot esculenta HOM05D002902 ORTHO05D008465 4.4e-18 94.4 70 68.6
CiPaw.15G125100 Carya illinoinensis HOM05D002902 ORTHO05D008465 5.7e-18 94.0 60 76.7
ATR0787G175 Amborella trichopoda HOM05D002902 ORTHO05D008465 7.4e-18 93.6 60 75.0
CDE04G1152 Ceratophyllum demersum HOM05D002902 ORTHO05D008465 1.7e-17 92.4 60 76.7
MBI16_g23745_MAGBIO Magnolia biondii HOM05D002902 ORTHO05D008465 1.7e-17 92.4 60 71.7
HPP92_021349 Vanilla planifolia HOM05D002902 ORTHO05D008465 1.7e-17 92.4 62 71.0
Cfa019837 Carpinus fangiana HOM05D002902 ORTHO05D008465 3.7e-17 91.3 60 70.0
PSO017G6356 Papaver somniferum HOM05D002902 ORTHO05D008465 3.7e-17 91.3 61 72.1
QL10p023175 Quercus lobata HOM05D002902 ORTHO05D008465 3.7e-17 91.3 59 74.6
Cc04_g07640 Coffea canephora HOM05D002902 ORTHO05D008465 6.3e-17 90.5 60 71.7
Eucgr.B00672 Eucalyptus grandis HOM05D002902 ORTHO05D008465 8.2e-17 90.1 59 72.9
Hma1.2p1_0595F.1_g186050 Hydrangea macrophylla HOM05D002902 ORTHO05D008465 8.2e-17 90.1 59 74.6
PSO478G3794 Papaver somniferum HOM05D002902 ORTHO05D008465 8.2e-17 90.1 58 74.1
Peaxi162Scf00119g00121 Petunia axillaris HOM05D002902 ORTHO05D008465 8.2e-17 90.1 60 70.0
Solyc12g038370.2 Solanum lycopersicum HOM05D002902 ORTHO05D008465 1.1e-16 89.7 61 68.9
BcaC09g48816 Brassica carinata HOM05D002902 ORTHO05D008465 1.4e-16 89.4 60 68.3
A01p35860 Brassica napus HOM05D002902 ORTHO05D008465 1.4e-16 89.4 60 68.3
C01p45650 Brassica napus HOM05D002902 ORTHO05D008465 1.4e-16 89.4 60 68.3
BraA01t03665Z Brassica rapa HOM05D002902 ORTHO05D008465 1.4e-16 89.4 60 68.3
Thhalv10021489m.g Eutrema salsugineum HOM05D002902 ORTHO05D008465 1.4e-16 89.4 60 68.3
Sopen12g018510 Solanum pennellii HOM05D002902 ORTHO05D008465 1.4e-16 89.4 61 68.9
GSVIVG01022737001 Vitis vinifera HOM05D002902 ORTHO05D008465 1.4e-16 89.4 60 68.3
Aa31LG8G5440 Aethionema arabicum HOM05D002902 ORTHO05D008465 1.8e-16 89.0 60 66.7
BolC1t04526H Brassica oleracea HOM05D002902 ORTHO05D008465 1.8e-16 89.0 60 68.3
CSS0029797 Camellia sinensis var. sinensis HOM05D002902 ORTHO05D008465 1.8e-16 89.0 60 70.0
Lsat_1_v5_gn_4_112141 Lactuca sativa HOM05D002902 ORTHO05D008465 2.4e-16 88.6 57 66.7
Lalb_Chr13g0302421 Lupinus albus HOM05D002902 ORTHO05D008465 2.4e-16 88.6 61 67.2
Nitab4.5_0006132g0030 Nicotiana tabacum HOM05D002902 ORTHO05D008465 2.4e-16 88.6 60 66.7
Sed0016028 Sechium edule HOM05D002902 ORTHO05D008465 2.4e-16 88.6 61 73.8
TPR.G26792 Trifolium pratense HOM05D002902 ORTHO05D008465 2.4e-16 88.6 61 65.6
Ah.11g047210 Amaranthus hybridus HOM05D002902 ORTHO05D008465 3.1e-16 88.2 60 73.3
AL3G31890 Arabidopsis lyrata HOM05D002902 ORTHO05D008465 3.1e-16 88.2 60 65.0
AT3G18580 Arabidopsis thaliana HOM05D002902 ORTHO05D008465 3.1e-16 88.2 60 65.0
CARHR093940 Cardamine hirsuta HOM05D002902 ORTHO05D008465 3.1e-16 88.2 60 65.0
Phvul.003G178400 Phaseolus vulgaris HOM05D002902 ORTHO05D008465 3.1e-16 88.2 61 67.2
BcaB06g25906 Brassica carinata HOM05D002902 ORTHO05D008465 4.1e-16 87.8 60 65.0
BcaC05g28599 Brassica carinata HOM05D002902 ORTHO05D008465 4.1e-16 87.8 60 65.0
C05p47020 Brassica napus HOM05D002902 ORTHO05D008465 4.1e-16 87.8 60 65.0
BraA05t21946Z Brassica rapa HOM05D002902 ORTHO05D008465 4.1e-16 87.8 60 65.0
THA.LOC104803364 Tarenaya hassleriana HOM05D002902 ORTHO05D008465 4.1e-16 87.8 59 69.5
TWI15G0714 Tripterygium wilfordii HOM05D002902 ORTHO05D008465 5.3e-16 87.4 61 68.9
BolC5t33432H Brassica oleracea HOM05D002902 ORTHO05D008465 7.0e-16 87.0 60 65.0
CAN.G578.2 Capsicum annuum HOM05D002902 ORTHO05D008465 7.0e-16 87.0 60 65.0
Lj4g0009401 Lotus japonicus HOM05D002902 ORTHO05D008465 7.0e-16 87.0 61 65.6
Medtr4g111750 Medicago truncatula HOM05D002902 ORTHO05D008465 7.0e-16 87.0 61 63.9
RcHm_v2.0_Chr7g0184411 Rosa chinensis HOM05D002902 ORTHO05D008465 9.1e-16 86.7 59 66.1
Haze_18587 Corylus avellana HOM05D002902 ORTHO05D008465 1.2e-15 86.3 57 71.9
Dinv36892 Davidia involucrata HOM05D002902 ORTHO05D008465 1.2e-15 86.3 60 70.0
Carub.0003s1836 Capsella rubella HOM05D002902 ORTHO05D008465 1.6e-15 85.9 60 63.3
A05p31040 Brassica napus HOM05D002902 ORTHO05D008465 2.0e-15 85.5 60 63.3
Potri.012G058800 Populus trichocarpa HOM05D002902 ORTHO05D008465 2.0e-15 85.5 60 68.3
Sabra12G0041200 Salix brachista HOM05D002902 ORTHO05D008465 2.0e-15 85.5 60 66.7
VMungo1215G0298 Vigna mungo HOM05D002902 ORTHO05D008465 2.0e-15 85.5 61 63.9
Glyma.05G014200 Glycine max HOM05D002902 ORTHO05D008465 2.6e-15 85.1 61 67.2
EL10Ac5g11239 Beta vulgaris HOM05D002902 ORTHO05D008465 3.5e-15 84.7 60 63.3
DCAR_011552 Daucus carota HOM05D002902 ORTHO05D008465 3.5e-15 84.7 60 68.3
MD06G1209800 Malus domestica HOM05D002902 ORTHO05D008465 3.5e-15 84.7 60 66.7
Cpa.g.sc13.67 Carica papaya HOM05D002902 ORTHO05D008465 4.5e-15 84.3 62 69.4
Migut.N02424 Erythranthe guttata HOM05D002902 ORTHO05D008465 4.5e-15 84.3 61 63.9
THA.LOC104821851 Tarenaya hassleriana HOM05D002902 ORTHO05D008465 4.5e-15 84.3 62 64.5
Ciclev10022157m.g Citrus clementina HOM05D002902 ORTHO05D008465 7.7e-15 83.6 60 66.7
HanXRQChr16g0502061 Helianthus annuus HOM05D002902 ORTHO05D008465 7.7e-15 83.6 61 65.6
MD14G1220600 Malus domestica HOM05D002902 ORTHO05D008465 7.7e-15 83.6 60 65.0
FvH4_5g12820 Fragaria vesca HOM05D002902 ORTHO05D008465 1.0e-14 83.2 62 56.5
arahy.Tifrunner.gnm1.ann1.BUM0G4 Arachis hypogaea HOM05D002902 ORTHO05D008465 1.7e-14 82.4 61 60.7
arahy.Tifrunner.gnm1.ann1.F2QG3S Arachis hypogaea HOM05D002902 ORTHO05D008465 1.7e-14 82.4 61 60.7
Os01g0642900 Oryza sativa ssp. japonica HOM05D002902 ORTHO05D008465 1.7e-14 82.4 59 67.8
Prupe.5G215900 Prunus persica HOM05D002902 ORTHO05D008465 1.7e-14 82.4 60 66.7
Sp3g16660 Schrenkiella parvula HOM05D002902 ORTHO05D008465 1.7e-14 82.4 58 67.2
vmacro17685 Vaccinium macrocarpon HOM05D002902 ORTHO05D008465 1.7e-14 82.4 63 66.7
ECA232G4870 Erigeron canadensis HOM05D006989 ORTHO05D008787 3.8e-14 81.3 53 69.8
Zm00001eb158710 Zea mays HOM05D002902 ORTHO05D008465 3.8e-14 81.3 59 66.1
CsaV3_1G006450 Cucumis sativus L. HOM05D002902 ORTHO05D008465 5.0e-14 80.9 61 65.6
HPP92_021354 Vanilla planifolia HOM05D002902 ORTHO05D008465 5.0e-14 80.9 42 88.1
AUR62032179 Chenopodium quinoa HOM05D002902 ORTHO05D008465 6.5e-14 80.5 60 61.7
SEGI_38419 Sequoiadendron giganteum HOM05D002902 ORTHO05D008465 6.5e-14 80.5 57 61.4
Hund02528 Selenicereus undatus HOM05D002902 ORTHO05D008465 8.5e-14 80.1 60 61.7
SalBow3G0049 Salvia bowleyana HOM05D002902 ORTHO05D008465 1.1e-13 79.7 60 60.0
Atru.chr9.728 Acer truncatum HOM05D002902 ORTHO05D008465 1.5e-13 79.3 60 61.7
Actinidia25078 Actinidia chinensis HOM05D002902 ORTHO05D008465 1.5e-13 79.3 57 68.4
MSTRG.12406 Avicennia marina HOM05D002902 ORTHO05D008465 1.5e-13 79.3 60 60.0
PGR083G0096 Punica granatum HOM05D002902 ORTHO05D008465 1.5e-13 79.3 60 61.7
Thecc.03G026800 Theobroma cacao HOM05D002902 ORTHO05D008465 2.1e-12 75.5 58 60.3
Gorai.001G048000 Gossypium raimondii HOM05D002902 ORTHO05D008465 2.7e-12 75.1 58 60.3
Gohir.A07G040800 Gossypium hirsutum HOM05D002902 ORTHO05D008465 3.6e-12 74.7 58 62.1
Gohir.D07G045000 Gossypium hirsutum HOM05D002902 ORTHO05D008465 4.7e-12 74.3 58 60.3
MELO3C002071.2 Cucumis melo HOM05D002902 ORTHO05D008465 6.1e-12 73.9 57 63.2
CANSAT11G1420 Cannabis sativa HOM05D002902 ORTHO05D008465 5.2e-11 70.9 58 56.9
Duzib205G0631 Durio zibethinus HOM05D002902 ORTHO05D008465 6.7e-11 70.5 45 71.1
unitig_22.g5685 Utricularia gibba HOM05D002902 ORTHO05D008465 1.1e-10 69.7 65 52.3
Aqoxy3G00373 Aquilegia oxysepala HOM05D002902 ORTHO05D008465 1.7e-09 65.9 36 75.0
Lj9A432T69 Lonicera japonica HOM05D002902 ORTHO05D008465 2.2e-09 65.5 37 73.0
CDE03G0322 Ceratophyllum demersum HOM05D002902 ORTHO05D008465 3.7e-09 64.7 38 81.6
Oeu027138.3 Olea europaea HOM05D002902 ORTHO05D008465 4.8e-09 64.3 37 75.7
Pp3c16_13590 Physcomitrium patens HOM05D002902 ORTHO05D008465 6.3e-09 63.9 56 51.8
Ca_25849_v3 Cicer arietinum L. HOM05D002902 ORTHO05D008465 1.8e-08 62.4 34 79.4
Ca_25850_v3 Cicer arietinum L. HOM05D002902 ORTHO05D008465 1.8e-08 62.4 34 79.4
Nitab4.5_0000208g0130 Nicotiana tabacum HOM05D002902 ORTHO05D008465 4.1e-08 61.2 34 73.5
DCAR_029838 Daucus carota HOM05D002902 ORTHO05D008465 5.3e-08 60.8 36 77.8
AUR62036939 Chenopodium quinoa HOM05D002902 ORTHO05D008465 1.6e-07 59.3 34 73.5
Pp3c5_8750 Physcomitrium patens HOM05D002902 ORTHO05D008465 3.5e-07 58.2 49 51.0
Mapoly0132s0028 Marchantia polymorpha HOM05D002902 ORTHO05D008465 1.7e-06 55.8 43 48.8
TWI81G1091 Tripterygium wilfordii HOM05D002902 ORTHO05D008465 3.8e-06 54.7 42 57.1
SGA_v2.0_scaffold8G04329 Striga asiatica HOM05D000495 ORTHO05D008465 5.0e-06 54.3 31 71.0
Psat0s3619g0160 Pisum sativum HOM05D000001 ORTHO05D011365 8.5e-06 53.5 57 56.1


User provided reference genes

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