Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G1025 Trochodendron aralioides HOM05D004462 ORTHO05D005231 3.6e-70 268.1 129 100.0
CAN.G809.94 Capsicum annuum HOM05D004462 ORTHO05D005231 1.5e-12 76.6 49 69.4
PGSC0003DMG400019728 Solanum tuberosum HOM05D004462 ORTHO05D005231 5.8e-12 74.7 49 65.3
Peaxi162Scf00344g01910 Petunia axillaris HOM05D004462 ORTHO05D005231 7.5e-12 74.3 49 65.3
TWI53G1401 Tripterygium wilfordii HOM05D004462 ORTHO05D005231 9.8e-12 73.9 49 65.3
Nitab4.5_0000483g0160 Nicotiana tabacum HOM05D004462 ORTHO05D005231 1.3e-11 73.6 49 65.3
CSS0041519 Camellia sinensis var. sinensis HOM05D004462 ORTHO05D005231 1.7e-11 73.2 49 63.3
Nn6g35012 Nelumbo nucifera HOM05D004462 ORTHO05D005231 1.7e-11 73.2 49 71.4
TAR383G0952 Trochodendron aralioides HOM05D004462 ORTHO05D005231 1.7e-11 73.2 64 56.2
Solyc02g081430.3 Solanum lycopersicum HOM05D004462 ORTHO05D005231 2.9e-11 72.4 49 63.3
Sopen02g026070 Solanum pennellii HOM05D004462 ORTHO05D005231 2.9e-11 72.4 49 63.3
Gohir.A07G176700 Gossypium hirsutum HOM05D004462 ORTHO05D005231 3.7e-11 72.0 49 63.3
Gohir.D07G184000 Gossypium hirsutum HOM05D004462 ORTHO05D005231 3.7e-11 72.0 49 63.3
Gorai.001G204400 Gossypium raimondii HOM05D004462 ORTHO05D005231 3.7e-11 72.0 49 63.3
Thecc.08G108000 Theobroma cacao HOM05D004462 ORTHO05D005231 3.7e-11 72.0 49 61.2
Nn4g24875 Nelumbo nucifera HOM05D004462 ORTHO05D005231 4.9e-11 71.6 49 65.3
GSVIVG01001479001 Vitis vinifera HOM05D004462 ORTHO05D005231 4.9e-11 71.6 49 63.3
ATR0753G103 Amborella trichopoda HOM05D004462 ORTHO05D005231 6.4e-11 71.2 49 65.3
Duzib128G1697 Durio zibethinus HOM05D004462 ORTHO05D005231 6.4e-11 71.2 49 61.2
FvH4_1g30090 Fragaria vesca HOM05D004462 ORTHO05D005231 6.4e-11 71.2 49 61.2
FAN19G2026 Fragaria x ananassa HOM05D004462 ORTHO05D005231 6.4e-11 71.2 49 61.2
RcHm_v2.0_Chr3g0491671 Rosa chinensis HOM05D004462 ORTHO05D005231 6.4e-11 71.2 49 63.3
vmacro18490 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 6.4e-11 71.2 49 59.2
Atru.chr1.1966 Acer truncatum HOM05D004462 ORTHO05D005231 8.3e-11 70.9 49 63.3
MSTRG.15620 Avicennia marina HOM05D004462 ORTHO05D005231 8.3e-11 70.9 49 61.2
Gohir.A08G037800 Gossypium hirsutum HOM05D004462 ORTHO05D005231 8.3e-11 70.9 49 63.3
Gohir.D08G048100 Gossypium hirsutum HOM05D004462 ORTHO05D005231 8.3e-11 70.9 49 63.3
Gorai.004G047600 Gossypium raimondii HOM05D004462 ORTHO05D005231 8.3e-11 70.9 49 63.3
Nn4g24876 Nelumbo nucifera HOM05D004462 ORTHO05D005231 8.3e-11 70.9 49 65.3
Lalb_Chr10g0104001 Lupinus albus HOM05D004462 ORTHO05D005231 1.1e-10 70.5 49 63.3
Potri.017G140900 Populus trichocarpa HOM05D004462 ORTHO05D005231 1.1e-10 70.5 49 61.2
SMO115G0120 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 1.1e-10 70.5 49 59.2
COL.COLO4_16416 Corchorus olitorius HOM05D004462 ORTHO05D005231 1.4e-10 70.1 49 63.3
Sabra17G0118400 Salix brachista HOM05D004462 ORTHO05D005231 1.4e-10 70.1 49 63.3
EL10Ac4g08901 Beta vulgaris HOM05D004462 ORTHO05D005231 1.9e-10 69.7 49 63.3
CANSAT35G0603 Cannabis sativa HOM05D004462 ORTHO05D005231 1.9e-10 69.7 49 59.2
Duzib138G0229 Durio zibethinus HOM05D004462 ORTHO05D005231 1.9e-10 69.7 49 59.2
FAN23G0373 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.9e-10 69.7 49 59.2
FAN26G3346 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.9e-10 69.7 49 59.2
FAN28G0360 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.9e-10 69.7 49 59.2
Hma1.2p1_0085F.1_g043860 Hydrangea macrophylla HOM05D004462 ORTHO05D005231 1.9e-10 69.7 49 59.2
RcHm_v2.0_Chr3g0491741 Rosa chinensis HOM05D004462 ORTHO05D005231 1.9e-10 69.7 49 63.3
Sc09g0004600 Simmondsia chinensis HOM05D004462 ORTHO05D005231 1.9e-10 69.7 49 61.2
PGR044G0250 Punica granatum HOM05D004462 ORTHO05D005231 2.4e-10 69.3 49 59.2
QL02p063959 Quercus lobata HOM05D004462 ORTHO05D005231 2.4e-10 69.3 49 61.2
AL2G23110 Arabidopsis lyrata HOM05D004462 ORTHO05D005231 3.2e-10 68.9 49 63.3
Ca_17052_v3 Cicer arietinum L. HOM05D004462 ORTHO05D005231 3.2e-10 68.9 49 61.2
HanXRQChr14g0443511 Helianthus annuus HOM05D004462 ORTHO05D005231 3.2e-10 68.9 49 59.2
LjContig00141g0019021 Lotus japonicus HOM05D004462 ORTHO05D005231 3.2e-10 68.9 49 59.2
Ciclev10013005m.g Citrus clementina HOM05D004462 ORTHO05D005231 4.1e-10 68.6 49 59.2
Haze_14345 Corylus avellana HOM05D004462 ORTHO05D005231 4.1e-10 68.6 49 59.2
Dinv28268 Davidia involucrata HOM05D004462 ORTHO05D005231 4.1e-10 68.6 49 61.2
Prupe.3G165500 Prunus persica HOM05D004462 ORTHO05D005231 4.1e-10 68.6 48 60.4
Cfa007736 Carpinus fangiana HOM05D004462 ORTHO05D005231 5.4e-10 68.2 49 59.2
CiPaw.03G079700 Carya illinoinensis HOM05D004462 ORTHO05D005231 5.4e-10 68.2 50 56.0
DCAR_003392 Daucus carota HOM05D004462 ORTHO05D005231 5.4e-10 68.2 49 59.2
Medtr5g076470 Medicago truncatula HOM05D004462 ORTHO05D005231 5.4e-10 68.2 49 61.2
RcHm_v2.0_Chr3g0491701 Rosa chinensis HOM05D004462 ORTHO05D005231 7.0e-10 67.8 49 61.2
AUR62037507 Chenopodium quinoa HOM05D004462 ORTHO05D005231 9.2e-10 67.4 49 57.1
MD17G1267600 Malus domestica HOM05D004462 ORTHO05D005231 9.2e-10 67.4 49 61.2
Manes.02G082400 Manihot esculenta HOM05D004462 ORTHO05D005231 9.2e-10 67.4 49 57.1
Sp7g05300 Schrenkiella parvula HOM05D004462 ORTHO05D005231 9.2e-10 67.4 49 59.2
Aqoxy3G04063 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 1.2e-09 67.0 49 59.2
Eucgr.F02921 Eucalyptus grandis HOM05D004462 ORTHO05D005231 1.2e-09 67.0 49 59.2
Actinidia32995 Actinidia chinensis HOM05D004462 ORTHO05D005231 1.6e-09 66.6 49 57.1
Carub.0002s1171 Capsella rubella HOM05D004462 ORTHO05D005231 1.6e-09 66.6 49 57.1
MBI12_g42585_MAGBIO Magnolia biondii HOM05D004462 ORTHO05D005231 1.6e-09 66.6 49 59.2
HPP92_011089 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.6e-09 66.6 49 57.1
HPP92_011106 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.6e-09 66.6 49 57.1
Actinidia28772 Actinidia chinensis HOM05D004462 ORTHO05D005231 2.0e-09 66.2 49 55.1
arahy.Tifrunner.gnm1.ann1.TN4V22 Arachis hypogaea HOM05D004462 ORTHO05D005231 2.0e-09 66.2 49 61.2
ECA238G1611 Erigeron canadensis HOM05D004462 ORTHO05D005231 2.0e-09 66.2 49 59.2
Thhalv10027981m.g Eutrema salsugineum HOM05D004462 ORTHO05D005231 2.0e-09 66.2 49 59.2
Lalb_Chr04g0251561 Lupinus albus HOM05D004462 ORTHO05D005231 2.0e-09 66.2 49 61.2
PSO063G2986 Papaver somniferum HOM05D004462 ORTHO05D005231 2.0e-09 66.2 49 63.3
PSO782G5040 Papaver somniferum HOM05D004462 ORTHO05D005231 2.0e-09 66.2 49 63.3
A04p10520 Brassica napus HOM05D004462 ORTHO05D005231 2.7e-09 65.9 49 57.1
BraA04t16718Z Brassica rapa HOM05D004462 ORTHO05D005231 2.7e-09 65.9 49 57.1
Lsat_1_v5_gn_2_72121 Lactuca sativa HOM05D004462 ORTHO05D005231 2.7e-09 65.9 49 51.0
MD17G1267400 Malus domestica HOM05D004462 ORTHO05D005231 2.7e-09 65.9 49 61.2
Carub.0007s3236 Capsella rubella HOM05D004462 ORTHO05D005231 3.5e-09 65.5 49 57.1
DCAR_014136 Daucus carota HOM05D004462 ORTHO05D005231 3.5e-09 65.5 49 55.1
HPP92_016581 Vanilla planifolia HOM05D004462 ORTHO05D005231 3.5e-09 65.5 49 55.1
DCAR_003393 Daucus carota HOM05D004462 ORTHO05D005231 6.0e-09 64.7 49 51.0
HanXRQChr12g0365631 Helianthus annuus HOM05D004462 ORTHO05D005231 6.0e-09 64.7 49 59.2
AT1G65820 Arabidopsis thaliana HOM05D004462 ORTHO05D005231 7.8e-09 64.3 49 57.1
CARHR215890 Cardamine hirsuta HOM05D004462 ORTHO05D005231 7.8e-09 64.3 49 55.1
CiPaw.04G050400 Carya illinoinensis HOM05D004462 ORTHO05D005231 7.8e-09 64.3 49 55.1
CDE05G2284 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 7.8e-09 64.3 49 59.2
MD09G1269000 Malus domestica HOM05D004462 ORTHO05D005231 7.8e-09 64.3 49 59.2
THA.LOC104805662 Tarenaya hassleriana HOM05D004462 ORTHO05D005231 7.8e-09 64.3 49 57.1
BcaC02g09558 Brassica carinata HOM05D004462 ORTHO05D005231 1.0e-08 63.9 49 55.1
C04p44160 Brassica napus HOM05D004462 ORTHO05D005231 1.0e-08 63.9 49 55.1
Aa31LG2G2630 Aethionema arabicum HOM05D000188 ORTHO05D000362 1.3e-08 63.5 49 53.1
A06p23000 Brassica napus HOM05D004462 ORTHO05D005231 1.3e-08 63.5 49 55.1
Os03g0709000 Oryza sativa ssp. japonica HOM05D004462 ORTHO05D005231 1.3e-08 63.5 49 59.2
SalBow5G4757 Salvia bowleyana HOM05D004462 ORTHO05D005231 1.3e-08 63.5 49 55.1
ClCG03G008870 Citrullus lanatus HOM05D004462 ORTHO05D005231 2.3e-08 62.8 49 57.1
Sed0009749 Sechium edule HOM05D004462 ORTHO05D005231 2.3e-08 62.8 49 55.1
BcaB04g19159 Brassica carinata HOM05D004462 ORTHO05D005231 3.0e-08 62.4 49 55.1
DCAR_003394 Daucus carota HOM05D004462 ORTHO05D005231 3.0e-08 62.4 49 51.0
Lsat_1_v5_gn_2_72161 Lactuca sativa HOM05D004462 ORTHO05D005231 3.0e-08 62.4 49 51.0
CARHR057680 Cardamine hirsuta HOM05D004462 ORTHO05D005231 3.9e-08 62.0 49 53.1
AUR62004745 Chenopodium quinoa HOM05D004462 ORTHO05D005231 3.9e-08 62.0 49 51.0
arahy.Tifrunner.gnm1.ann1.UF2MTZ Arachis hypogaea HOM05D004462 ORTHO05D005231 5.0e-08 61.6 44 61.4
BcaB05g24136 Brassica carinata HOM05D004462 ORTHO05D005231 5.0e-08 61.6 49 51.0
BcaC03g14720 Brassica carinata HOM05D004462 ORTHO05D005231 6.6e-08 61.2 49 51.0
C02p21630 Brassica napus HOM05D004462 ORTHO05D005231 6.6e-08 61.2 49 51.0
BolC2t08300H Brassica oleracea HOM05D004462 ORTHO05D005231 6.6e-08 61.2 49 51.0
CsaV3_5G023890 Cucumis sativus L. HOM05D004462 ORTHO05D005231 6.6e-08 61.2 49 53.1
Migut.K01204 Erythranthe guttata HOM05D004462 ORTHO05D005231 6.6e-08 61.2 49 53.1
Sp5g20770 Schrenkiella parvula HOM05D004462 ORTHO05D005231 6.6e-08 61.2 49 51.0
Sed0028045 Sechium edule HOM05D004462 ORTHO05D005231 6.6e-08 61.2 49 53.1
vmacro20446 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 6.6e-08 61.2 39 64.1
Oeu002679.1 Olea europaea HOM05D004462 ORTHO05D005231 8.6e-08 60.8 49 49.0
PSO210G6210 Papaver somniferum HOM05D004462 ORTHO05D005231 8.6e-08 60.8 39 66.7
A02p13370 Brassica napus HOM05D004462 ORTHO05D005231 1.1e-07 60.5 49 51.0
BraA02t06395Z Brassica rapa HOM05D004462 ORTHO05D005231 1.1e-07 60.5 49 51.0
Psat2g044120 Pisum sativum HOM05D004462 ORTHO05D005231 1.1e-07 60.5 49 53.1
Sabra04G0051800 Salix brachista HOM05D004462 ORTHO05D005231 1.1e-07 60.5 44 59.1
TPR.G5341 Trifolium pratense HOM05D004462 ORTHO05D005231 1.5e-07 60.1 49 55.1
Zm00001eb054680 Zea mays HOM05D004462 ORTHO05D005231 1.5e-07 60.1 48 58.3
Cc00_g30600 Coffea canephora HOM05D004462 ORTHO05D005231 1.2e-06 57.0 50 54.0
Cc02_g03200 Coffea canephora HOM05D004462 ORTHO05D005231 1.2e-06 57.0 50 54.0
Hund06859 Selenicereus undatus HOM05D004462 ORTHO05D005231 1.6e-06 56.6 42 54.8
Mapoly0075s0081 Marchantia polymorpha HOM05D004462 ORTHO05D005231 2.8e-06 55.8 49 55.1
Cpa.g.c42729 Carica papaya HOM05D004462 ORTHO05D005231 4.7e-06 55.1 44 52.3
CDE06G2132 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 6.2e-06 54.7 50 50.0
vmacro18489 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 6.2e-06 54.7 39 59.0


User provided reference genes

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