Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G1016 Trochodendron aralioides HOM05D003602 ORTHO05D004808 0.0e+00 1101.3 554 100.0
Dinv34217 Davidia involucrata HOM05D003602 ORTHO05D004808 1.1e-261 906.4 553 80.5
Nn1g00272 Nelumbo nucifera HOM05D003602 ORTHO05D004808 1.4e-261 906.0 554 81.0
Hma1.2p1_0390F.1_g142640 Hydrangea macrophylla HOM05D003602 ORTHO05D004808 1.1e-256 889.8 553 79.2
Actinidia17298 Actinidia chinensis HOM05D003602 ORTHO05D004808 1.8e-256 889.0 553 78.5
Lj7P499T29 Lonicera japonica HOM05D003602 ORTHO05D004808 3.1e-256 888.3 553 79.0
vmacro07844 Vaccinium macrocarpon HOM05D003602 ORTHO05D004808 1.5e-255 885.9 553 78.3
Gohir.A07G137000 Gossypium hirsutum HOM05D003602 ORTHO05D004808 2.2e-254 882.1 554 78.2
Duzib138G1559 Durio zibethinus HOM05D003602 ORTHO05D004808 1.1e-253 879.8 554 77.8
Duzib133G0673 Durio zibethinus HOM05D003602 ORTHO05D004808 2.5e-253 878.6 554 77.4
Manes.01G245400 Manihot esculenta HOM05D003602 ORTHO05D004808 5.5e-253 877.5 554 77.4
CSS0032390 Camellia sinensis var. sinensis HOM05D003602 ORTHO05D004808 7.2e-253 877.1 553 78.1
Gohir.D07G142200 Gossypium hirsutum HOM05D003602 ORTHO05D004808 9.4e-253 876.7 554 78.0
Thecc.01G340800 Theobroma cacao HOM05D003602 ORTHO05D004808 9.4e-253 876.7 554 78.2
Gorai.001G154000 Gossypium raimondii HOM05D003602 ORTHO05D004808 1.6e-252 875.9 554 77.8
THA.LOC104817368 Tarenaya hassleriana HOM05D003602 ORTHO05D004808 4.7e-252 874.4 554 76.7
Rhsim03G0025100 Rhododendron simsii HOM05D003602 ORTHO05D004808 5.1e-251 870.9 553 76.5
Manes.05G021800 Manihot esculenta HOM05D003602 ORTHO05D004808 9.7e-250 866.7 554 77.1
CiPaw.01G077200 Carya illinoinensis HOM05D003602 ORTHO05D004808 2.0e-247 859.0 554 75.8
Potri.002G172700 Populus trichocarpa HOM05D003602 ORTHO05D004808 2.0e-247 859.0 554 76.2
TWI59G0599 Tripterygium wilfordii HOM05D003602 ORTHO05D004808 1.3e-246 856.3 554 75.1
Cfa003788 Carpinus fangiana HOM05D003602 ORTHO05D004808 6.5e-246 854.0 554 75.1
Sabra02G0140500 Salix brachista HOM05D003602 ORTHO05D004808 1.6e-244 849.4 554 75.3
CANSAT56G2221 Cannabis sativa HOM05D003602 ORTHO05D004808 2.7e-244 848.6 554 75.1
Potri.014G100000 Populus trichocarpa HOM05D003602 ORTHO05D004808 2.7e-244 848.6 554 75.3
Sabra14G0073400 Salix brachista HOM05D003602 ORTHO05D004808 3.6e-244 848.2 554 75.1
Eucgr.D02383 Eucalyptus grandis HOM05D003602 ORTHO05D004808 8.0e-244 847.0 554 74.2
Oeu043228.1 Olea europaea HOM05D003602 ORTHO05D004808 1.0e-243 846.7 554 75.1
Haze_15672 Corylus avellana HOM05D003602 ORTHO05D004808 2.3e-243 845.5 554 74.4
Aqoxy7G00067 Aquilegia oxysepala HOM05D003602 ORTHO05D004808 8.8e-243 843.6 556 75.0
Sed0018077 Sechium edule HOM05D003602 ORTHO05D004808 8.8e-243 843.6 554 73.8
QL08p045638 Quercus lobata HOM05D003602 ORTHO05D004808 9.7e-242 840.1 556 75.4
CsaV3_3G007970 Cucumis sativus L. HOM05D003602 ORTHO05D004808 1.7e-241 839.3 554 72.9
Sed0022447 Sechium edule HOM05D003602 ORTHO05D004808 2.8e-241 838.6 554 73.6
ClCG05G000750 Citrullus lanatus HOM05D003602 ORTHO05D004808 3.7e-241 838.2 554 73.3
MELO3C006015.2 Cucumis melo HOM05D003602 ORTHO05D004808 6.3e-241 837.4 554 72.9
Ciclev10018709m.g Citrus clementina HOM05D003602 ORTHO05D004808 8.2e-241 837.0 554 73.6
arahy.Tifrunner.gnm1.ann1.M38EY0 Arachis hypogaea HOM05D003602 ORTHO05D004808 1.1e-240 836.6 554 74.4
arahy.Tifrunner.gnm1.ann1.100NT6 Arachis hypogaea HOM05D003602 ORTHO05D004808 2.4e-240 835.5 554 74.2
Nitab4.5_0001763g0060 Nicotiana tabacum HOM05D003602 ORTHO05D004808 1.2e-239 833.2 553 73.2
COL.COLO4_06273 Corchorus olitorius HOM05D003602 ORTHO05D004808 2.0e-239 832.4 555 74.1
AL4G45940 Arabidopsis lyrata HOM05D003602 ORTHO05D004808 2.6e-239 832.0 555 73.0
Lalb_Chr17g0342751 Lupinus albus HOM05D003602 ORTHO05D004808 7.7e-239 830.5 552 73.4
Prupe.2G190300 Prunus persica HOM05D003602 ORTHO05D004808 1.0e-238 830.1 554 74.2
PGSC0003DMG401000117 Solanum tuberosum HOM05D003602 ORTHO05D004808 2.9e-238 828.6 553 72.3
Lalb_Chr04g0254381 Lupinus albus HOM05D003602 ORTHO05D004808 6.5e-238 827.4 554 73.1
Migut.N01537 Erythranthe guttata HOM05D003602 ORTHO05D004808 1.5e-237 826.2 554 73.5
Nitab4.5_0002614g0030 Nicotiana tabacum HOM05D003602 ORTHO05D004808 1.9e-237 825.9 553 72.5
PGR042G2389 Punica granatum HOM05D003602 ORTHO05D004808 2.5e-237 825.5 556 74.1
DCAR_008665 Daucus carota HOM05D003602 ORTHO05D004808 3.2e-237 825.1 553 73.2
Carub.0004s2923 Capsella rubella HOM05D003602 ORTHO05D004808 1.2e-236 823.2 555 71.7
Glyma.16G023700 Glycine max HOM05D003602 ORTHO05D004808 1.2e-236 823.2 554 72.4
Sopen01g039780 Solanum pennellii HOM05D003602 ORTHO05D004808 1.2e-236 823.2 553 72.0
Solyc01g096060.4 Solanum lycopersicum HOM05D003602 ORTHO05D004808 3.6e-236 821.6 553 72.0
MD01G1083100 Malus domestica HOM05D003602 ORTHO05D004808 4.7e-236 821.2 552 73.4
RcHm_v2.0_Chr1g0360031 Rosa chinensis HOM05D003602 ORTHO05D004808 6.1e-236 820.8 554 72.4
SGA_v2.0_scaffold22G09976 Striga asiatica HOM05D003602 ORTHO05D004808 1.0e-235 820.1 554 73.3
CARHR141850 Cardamine hirsuta HOM05D003602 ORTHO05D004808 1.8e-235 819.3 554 71.8
MSTRG.17352 Avicennia marina HOM05D003602 ORTHO05D004808 2.3e-235 818.9 554 72.0
Glyma.07G054900 Glycine max HOM05D003602 ORTHO05D004808 3.0e-235 818.5 554 72.4
Thhalv10001293m.g Eutrema salsugineum HOM05D003602 ORTHO05D004808 5.2e-235 817.8 554 71.3
AT2G46520 Arabidopsis thaliana HOM05D003602 ORTHO05D004808 6.7e-235 817.4 555 71.2
SGA_v2.0_scaffold22G09979 Striga asiatica HOM05D003602 ORTHO05D004808 8.8e-235 817.0 552 72.8
Peaxi162Scf00345g00023 Petunia axillaris HOM05D003602 ORTHO05D004808 3.3e-234 815.1 553 71.6
CAN.G1415.23 Capsicum annuum HOM05D003602 ORTHO05D004808 4.4e-234 814.7 553 71.4
BcaC02g12682 Brassica carinata HOM05D003602 ORTHO05D004808 3.7e-233 811.6 554 71.3
Sp4g28560 Schrenkiella parvula HOM05D003602 ORTHO05D004808 3.7e-233 811.6 554 70.9
A05p01280 Brassica napus HOM05D003602 ORTHO05D004808 1.4e-232 809.7 554 70.2
BraA05t19126Z Brassica rapa HOM05D003602 ORTHO05D004808 1.4e-232 809.7 554 70.2
Phvul.006G114200 Phaseolus vulgaris HOM05D003602 ORTHO05D004808 1.3e-230 803.1 554 72.6
Lj3g0012795 Lotus japonicus HOM05D003602 ORTHO05D004808 3.8e-230 801.6 560 71.1
VMungo0540G0209 Vigna mungo HOM05D003602 ORTHO05D004808 5.0e-230 801.2 554 72.4
VMungo0540G0473 Vigna mungo HOM05D003602 ORTHO05D004808 6.5e-230 800.8 554 72.0
TPR.G20226 Trifolium pratense HOM05D003602 ORTHO05D004808 1.5e-229 799.7 554 70.9
Oeu007881.3 Olea europaea HOM05D003602 ORTHO05D004808 5.5e-229 797.7 626 66.1
Medtr8g027450 Medicago truncatula HOM05D003602 ORTHO05D004808 1.6e-228 796.2 554 70.8
ATR0605G321 Amborella trichopoda HOM05D003602 ORTHO05D004808 1.4e-227 793.1 554 70.4
Phvul.006G114111 Phaseolus vulgaris HOM05D003602 ORTHO05D004808 4.0e-227 791.6 554 70.9
PSO135G0828 Papaver somniferum HOM05D003602 ORTHO05D004808 5.2e-227 791.2 556 69.8
PSO384G3294 Papaver somniferum HOM05D003602 ORTHO05D004808 4.4e-226 788.1 556 69.6
Sc02g0002440 Simmondsia chinensis HOM05D003602 ORTHO05D004808 4.4e-226 788.1 547 70.2
Sc02g0002490 Simmondsia chinensis HOM05D003602 ORTHO05D004808 4.4e-226 788.1 547 70.2
FvH4_7g16830 Fragaria vesca HOM05D003602 ORTHO05D004808 5.7e-226 787.7 555 70.1
FAN01G1925 Fragaria x ananassa HOM05D003602 ORTHO05D004808 1.3e-225 786.6 555 69.9
FAN06G4341 Fragaria x ananassa HOM05D003602 ORTHO05D004808 1.3e-225 786.6 555 70.1
FAN10G3025 Fragaria x ananassa HOM05D003602 ORTHO05D004808 1.7e-225 786.2 555 69.9
FAN06G1715 Fragaria x ananassa HOM05D003602 ORTHO05D004808 2.8e-225 785.4 555 69.7
FAN03G2718 Fragaria x ananassa HOM05D003602 ORTHO05D004808 4.8e-225 784.6 555 69.5
FAN10G2704 Fragaria x ananassa HOM05D003602 ORTHO05D004808 1.4e-224 783.1 555 69.5
Cc02_g39500 Coffea canephora HOM05D003602 ORTHO05D004808 3.5e-223 778.5 553 69.4
HanXRQChr04g0120491 Helianthus annuus HOM05D003602 ORTHO05D004808 1.9e-221 772.7 551 68.6
unitig_736.g22809 Utricularia gibba HOM05D003602 ORTHO05D004808 4.0e-219 765.0 554 69.1
Lsat_1_v5_gn_7_961 Lactuca sativa HOM05D003602 ORTHO05D004808 1.5e-218 763.1 557 68.6
Ca_23524_v3 Cicer arietinum L. HOM05D003602 ORTHO05D004808 4.9e-217 758.1 554 68.6
ECA236G0047 Erigeron canadensis HOM05D003602 ORTHO05D004808 4.9e-217 758.1 553 67.8
Aa31LG1G27870 Aethionema arabicum HOM05D003602 ORTHO05D004808 8.3e-217 757.3 554 67.5
Aqoxy4G00207 Aquilegia oxysepala HOM05D003602 ORTHO05D004808 3.1e-216 755.4 528 72.0
Actinidia39220 Actinidia chinensis HOM05D003602 ORTHO05D004808 4.1e-216 755.0 475 78.3
QL11p045606 Quercus lobata HOM05D003602 ORTHO05D004808 1.2e-215 753.4 600 66.8
SEGI_02600 Sequoiadendron giganteum HOM05D003602 ORTHO05D004808 5.9e-215 751.1 554 65.2
C04p01410 Brassica napus HOM05D003602 ORTHO05D004808 2.9e-214 748.8 554 66.2
BolC4t21795H Brassica oleracea HOM05D003602 ORTHO05D004808 3.8e-214 748.4 554 66.2
CSS0048042 Camellia sinensis var. sinensis HOM05D003602 ORTHO05D004808 1.2e-212 743.4 462 79.0
Dinv32601 Davidia involucrata HOM05D003602 ORTHO05D004808 1.8e-211 739.6 522 73.8
Hund27357 Selenicereus undatus HOM05D003602 ORTHO05D004808 2.9e-209 732.3 547 64.7
AUR62020311 Chenopodium quinoa HOM05D003602 ORTHO05D004808 1.9e-205 719.5 547 64.0
EL10Ac6g13271 Beta vulgaris HOM05D003602 ORTHO05D004808 9.5e-205 717.2 547 62.9
SalBow2G0371 Salvia bowleyana HOM05D003602 ORTHO05D004808 2.1e-204 716.1 556 65.1
TAR375G0067 Trochodendron aralioides HOM05D003602 ORTHO05D004808 7.5e-202 707.6 441 81.6
HPP92_002938 Vanilla planifolia HOM05D003602 ORTHO05D004808 3.2e-200 702.2 566 60.2
Ah.14g081150 Amaranthus hybridus HOM05D003602 ORTHO05D004808 3.9e-198 695.3 547 61.2
Carub.0001s3638 Capsella rubella HOM05D003602 ORTHO05D004808 5.1e-198 694.9 559 63.7
Ah.03g136880 Amaranthus hybridus HOM05D003602 ORTHO05D004808 1.5e-197 693.3 547 60.9
CARHR193560 Cardamine hirsuta HOM05D003602 ORTHO05D004808 7.3e-197 691.0 528 64.4
SHI11330 Sapria himalayana HOM05D003602 ORTHO05D004808 1.3e-190 670.2 554 59.0
CARHR195690 Cardamine hirsuta HOM05D003602 ORTHO05D004808 1.9e-189 666.4 554 61.6
BcaC03g13954 Brassica carinata HOM05D003602 ORTHO05D004808 5.6e-189 664.8 558 59.5
Mapoly0156s0024 Marchantia polymorpha HOM05D003602 ORTHO05D004808 6.2e-188 661.4 548 58.4
A02p08760 Brassica napus HOM05D003602 ORTHO05D004808 1.7e-185 653.3 555 59.6
EL10Ac8g18571 Beta vulgaris HOM05D003602 ORTHO05D004808 7.1e-184 647.9 554 58.5
Migut.B01885 Erythranthe guttata HOM05D003602 ORTHO05D004808 5.6e-181 638.3 415 74.2
BraA02t05946Z Brassica rapa HOM05D003602 ORTHO05D004808 8.1e-180 634.4 555 57.8
Zm00001eb055080 Zea mays HOM05D003602 ORTHO05D004808 2.5e-173 612.8 566 54.2
Pp3c16_3270 Physcomitrium patens HOM05D003602 ORTHO05D004808 2.1e-172 609.8 548 55.3
CDE10G0721 Ceratophyllum demersum HOM05D003602 ORTHO05D004808 8.1e-172 607.8 481 63.6
Zm00001eb216140 Zea mays HOM05D003602 ORTHO05D004808 1.9e-168 596.7 567 53.1
Pp3c27_3380 Physcomitrium patens HOM05D003602 ORTHO05D004808 9.3e-168 594.3 550 53.8
Os01g0235400 Oryza sativa ssp. japonica HOM05D003602 ORTHO05D004808 3.8e-161 572.4 544 53.1
SMO364G0669 Selaginella moellendorffii HOM05D003602 ORTHO05D004808 5.5e-160 568.5 560 51.2
SalBow3G0266 Salvia bowleyana HOM05D003602 ORTHO05D004808 6.2e-156 555.1 415 65.8
CBR_g50023 Chara braunii HOM05D003602 ORTHO05D004808 1.3e-150 537.3 573 49.2
GSVIVG01027164001 Vitis vinifera HOM05D003602 ORTHO05D004808 2.3e-150 536.6 313 83.4
Cpa.g.sc18.79 Carica papaya HOM05D003602 ORTHO05D004808 1.0e-137 494.6 319 76.5
TPR.G33518 Trifolium pratense HOM05D003602 ORTHO05D004808 1.2e-119 434.5 451 52.5
Cre16.g685901 Chlamydomonas reinhardtii HOM05D003602 ORTHO05D004808 1.6e-119 434.1 527 43.1
SMO358G0230 Selaginella moellendorffii HOM05D003602 ORTHO05D004808 1.0e-118 431.4 509 46.8
MCO04G210 Micromonas commoda HOM05D003602 ORTHO05D004808 1.1e-115 421.4 566 41.2
AUR62011778 Chenopodium quinoa HOM05D003602 ORTHO05D004808 7.0e-115 418.7 399 53.6
BcaB03g13365 Brassica carinata HOM05D003602 ORTHO05D004808 1.3e-113 414.5 528 47.7
CDE10G0625 Ceratophyllum demersum HOM05D003602 ORTHO05D004808 1.7e-113 414.1 479 48.9
Medtr6g051660 Medicago truncatula HOM05D003602 ORTHO05D004808 1.1e-107 394.8 314 63.7
Psat4g162200 Pisum sativum HOM05D003602 ORTHO05D004808 3.7e-100 369.8 256 72.7
PRCOL_00001712 Prasinoderma coloniale HOM05D003602 ORTHO05D004808 1.1e-96 358.2 536 38.1
AagrBONN_evm.TU.Sc2ySwM_228.4084 Anthoceros agrestis HOM05D003602 ORTHO05D004808 1.5e-93 347.8 306 57.8
FAN17G1261 Fragaria x ananassa HOM05D003602 ORTHO05D004808 2.6e-93 347.1 350 53.7
MD07G1151800 Malus domestica HOM05D003602 ORTHO05D004808 1.9e-91 340.9 214 76.2
AagrBONN_evm.TU.Sc2ySwM_368.664__665 Anthoceros agrestis HOM05D003602 ORTHO05D004808 4.3e-88 329.7 315 54.0
CAN.G1045.28 Capsicum annuum HOM05D003602 ORTHO05D004808 5.4e-83 312.8 245 64.5
Thhalv10019782m.g Eutrema salsugineum HOM05D003602 ORTHO05D004808 2.3e-81 307.4 471 41.2
BolC2t07237H Brassica oleracea HOM05D003602 ORTHO05D004808 1.6e-79 301.2 333 49.8
Lj9C388G20 Lonicera japonica HOM05D003602 ORTHO05D004808 1.3e-73 281.6 193 71.5
QL10p039122 Quercus lobata HOM05D003602 ORTHO05D004808 3.4e-69 266.9 168 76.8
BcaC03g15021 Brassica carinata HOM05D003602 ORTHO05D018547 2.3e-65 254.2 542 36.5
Cfa023442 Carpinus fangiana HOM05D003602 ORTHO05D004808 9.6e-56 222.2 559 28.6
Lsat_1_v5_gn_2_68180 Lactuca sativa HOM05D003602 ORTHO05D004808 3.9e-49 200.3 154 68.2
QL04p077689 Quercus lobata HOM05D003602 ORTHO05D002925 5.1e-49 199.9 132 74.2
QL06p027270 Quercus lobata HOM05D004207 ORTHO05D005188 2.5e-48 197.6 125 79.2
TAR375G0657 Trochodendron aralioides HOM05D003602 ORTHO05D004808 3.4e-45 187.2 104 87.5
QL05p088277 Quercus lobata HOM05D003602 ORTHO05D007458 3.2e-43 180.6 116 75.0
AL350U10020 Arabidopsis lyrata HOM05D003602 ORTHO05D004808 1.0e-41 175.6 404 30.4
ECA240G0654 Erigeron canadensis HOM05D003602 ORTHO05D004808 1.1e-38 165.6 133 68.4
AagrBONN_evm.TU.Sc2ySwM_368.663 Anthoceros agrestis HOM05D003602 ORTHO05D004808 1.5e-37 161.8 397 30.2
QL02p042411 Quercus lobata HOM05D002707 ORTHO05D002925 5.8e-37 159.8 107 74.8
Lsat_1_v5_gn_2_118360 Lactuca sativa HOM05D003602 ORTHO05D020334 3.9e-33 147.1 184 47.8
FAN22G1715 Fragaria x ananassa HOM05D003602 ORTHO05D020334 2.5e-32 144.4 128 57.8
BolC2t08632H Brassica oleracea HOM05D003602 ORTHO05D004808 1.0e-28 132.5 147 48.3
C02p25670 Brassica napus HOM05D003602 ORTHO05D018547 5.5e-27 126.7 201 40.3
Lj9C388T18 Lonicera japonica HOM05D003602 ORTHO05D020334 5.5e-27 126.7 100 66.0
ECA247G2319 Erigeron canadensis HOM05D003602 ORTHO05D020334 9.4e-27 125.9 114 52.6
Dinv07459 Davidia involucrata HOM05D003602 ORTHO05D004808 2.2e-23 114.8 75 66.7
FAN17G1901 Fragaria x ananassa HOM05D003602 ORTHO05D020334 2.2e-23 114.8 101 58.4
Oeu004956.1 Olea europaea HOM05D003602 ORTHO05D004808 1.9e-19 101.7 262 32.4
Psat4g156360 Pisum sativum HOM05D003602 ORTHO05D004808 3.2e-19 100.9 67 76.1
Psat0s1548g0040 Pisum sativum HOM05D000278 ORTHO05D015036 1.5e-16 92.0 65 64.6
SEGI_28185 Sequoiadendron giganteum HOM05D000644 ORTHO05D000504 1.5e-13 82.0 65 58.5
AL3G34240 Arabidopsis lyrata HOM05D003602 ORTHO05D004808 2.2e-12 78.2 132 33.3
CARHR124510 Cardamine hirsuta HOM05D003602 ORTHO05D020334 2.5e-11 74.7 66 54.5
VMungo1309G3028 Vigna mungo HOM05D024188 ORTHO05D008631 1.4e-09 68.9 43 72.1


User provided reference genes

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