Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G1015 Trochodendron aralioides HOM05D004962 ORTHO05D006249 9.7e-32 139.4 66 100.0
TAR371G0254 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.0e-25 119.4 64 90.6
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 9.8e-24 112.8 64 81.2
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 1.3e-23 112.5 64 81.2
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 1.7e-23 112.1 64 81.2
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 2.2e-23 111.7 64 81.2
vmacro10604 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 4.8e-23 110.5 64 81.2
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 1.1e-22 109.4 64 76.6
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 1.1e-22 109.4 64 76.6
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 1.4e-22 109.0 64 78.1
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 1.4e-22 109.0 64 78.1
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 1.8e-22 108.6 64 78.1
Dinv31590 Davidia involucrata HOM05D004962 ORTHO05D006249 1.8e-22 108.6 64 76.6
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 2.4e-22 108.2 64 78.1
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 4.1e-22 107.5 64 75.0
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 4.1e-22 107.5 64 76.6
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 4.1e-22 107.5 64 78.1
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 4.1e-22 107.5 64 75.0
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 5.4e-22 107.1 64 76.6
TPR.G18855 Trifolium pratense HOM05D004962 ORTHO05D006249 7.0e-22 106.7 64 75.0
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 9.1e-22 106.3 64 71.9
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 9.1e-22 106.3 64 71.9
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 1.2e-21 105.9 64 75.0
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 1.2e-21 105.9 64 75.0
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 1.2e-21 105.9 64 75.0
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 1.6e-21 105.5 64 75.0
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 1.6e-21 105.5 64 75.0
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 1.6e-21 105.5 64 75.0
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 2.0e-21 105.1 64 76.6
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 2.0e-21 105.1 64 71.9
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 2.0e-21 105.1 64 75.0
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 2.7e-21 104.8 64 75.0
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 2.7e-21 104.8 64 75.0
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 2.7e-21 104.8 64 75.0
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 2.7e-21 104.8 64 73.4
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 3.5e-21 104.4 64 73.4
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 3.5e-21 104.4 66 77.3
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 4.5e-21 104.0 64 75.0
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 4.5e-21 104.0 64 75.0
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 4.5e-21 104.0 64 73.4
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 4.5e-21 104.0 64 76.6
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 5.9e-21 103.6 64 71.9
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 7.7e-21 103.2 64 75.0
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 7.7e-21 103.2 64 71.9
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 7.7e-21 103.2 64 71.9
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 1.0e-20 102.8 64 70.3
Actinidia16688 Actinidia chinensis HOM05D004962 ORTHO05D006249 1.3e-20 102.4 64 73.4
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 1.3e-20 102.4 64 76.6
COL.COLO4_32126 Corchorus olitorius HOM05D004962 ORTHO05D006249 1.7e-20 102.1 64 71.9
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 2.3e-20 101.7 64 73.4
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 2.9e-20 101.3 64 71.9
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 3.8e-20 100.9 64 71.9
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 5.0e-20 100.5 64 73.4
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 6.6e-20 100.1 64 70.3
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 6.6e-20 100.1 64 73.4
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 8.6e-20 99.8 64 68.8
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 8.6e-20 99.8 64 70.3
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 8.6e-20 99.8 64 70.3
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 1.1e-19 99.4 64 71.9
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 1.1e-19 99.4 64 70.3
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 1.1e-19 99.4 64 75.0
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 1.1e-19 99.4 64 71.9
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 1.5e-19 99.0 64 70.3
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 1.5e-19 99.0 64 68.8
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 2.5e-19 98.2 64 73.4
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 2.5e-19 98.2 64 68.8
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 2.5e-19 98.2 64 68.8
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 2.5e-19 98.2 64 68.8
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 3.3e-19 97.8 64 70.3
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 4.2e-19 97.4 64 70.3
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 4.2e-19 97.4 64 68.8
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 5.5e-19 97.1 65 72.3
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 1.2e-18 95.9 65 70.8
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 1.6e-18 95.5 64 71.9
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 3.6e-18 94.4 64 70.3
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 3.6e-18 94.4 64 70.3
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 3.6e-18 94.4 64 67.2
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 4.7e-18 94.0 64 67.2
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 4.7e-18 94.0 64 67.2
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 4.7e-18 94.0 64 67.2
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 4.7e-18 94.0 64 67.2
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 4.7e-18 94.0 64 67.2
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 4.7e-18 94.0 64 67.2
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 1.0e-17 92.8 64 67.2
CDE06G0233 Ceratophyllum demersum HOM05D004962 ORTHO05D006249 3.0e-17 91.3 64 65.6
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 6.8e-17 90.1 66 66.7
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 8.9e-17 89.7 64 64.1
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 2.6e-16 88.2 64 62.5
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 3.4e-16 87.8 65 64.6
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 3.4e-16 87.8 64 64.1
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 4.4e-16 87.4 65 63.1
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 7.5e-16 86.7 64 62.5
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 9.8e-16 86.3 65 64.6
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 2.2e-15 85.1 65 63.1
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 2.2e-15 85.1 65 61.5
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 2.2e-15 85.1 65 61.5
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 2.2e-15 85.1 65 61.5
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 2.2e-15 85.1 65 61.5
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 2.2e-15 85.1 65 61.5
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 2.8e-15 84.7 65 61.5
ClCG04G012840 Citrullus lanatus HOM05D004962 ORTHO05D001482 2.8e-15 84.7 64 67.2
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 4.9e-15 84.0 65 61.5
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 8.3e-15 83.2 65 63.1
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 1.1e-14 82.8 65 60.0
HPP92_023439 Vanilla planifolia HOM05D004962 ORTHO05D006249 1.1e-14 82.8 64 59.4
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 2.0e-13 78.6 71 54.9
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 2.7e-13 78.2 64 57.8
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 2.9e-12 74.7 67 58.2
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 4.3e-11 70.9 40 72.5
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 1.6e-10 68.9 65 55.4
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 2.3e-09 65.1 64 54.7
SEGI_19116 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 3.7e-07 57.8 39 64.1
SEGI_20231 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 3.7e-07 57.8 39 64.1


User provided reference genes

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