Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G1005 Trochodendron aralioides HOM05D008015 ORTHO05D009180 2.3e-102 375.6 188 100.0
TAR629G2519 Trochodendron aralioides HOM05D008015 ORTHO05D009180 6.1e-55 218.0 199 64.3
Nn4g24386 Nelumbo nucifera HOM05D008015 ORTHO05D009180 2.4e-51 206.1 186 61.3
QL02p059324 Quercus lobata HOM05D008015 ORTHO05D009180 1.4e-46 190.3 186 57.0
Cfa007792 Carpinus fangiana HOM05D008015 ORTHO05D009180 2.0e-37 159.8 192 51.0
Potri.004G085100 Populus trichocarpa HOM05D008015 ORTHO05D009180 2.0e-37 159.8 166 56.0
Oeu032314.1 Olea europaea HOM05D008015 ORTHO05D009180 8.3e-36 154.5 183 49.2
Ciclev10012847m.g Citrus clementina HOM05D008015 ORTHO05D009180 2.4e-35 152.9 192 47.4
Duzib268G1603 Durio zibethinus HOM05D008015 ORTHO05D009180 1.3e-33 147.1 183 49.2
Nn3g18370 Nelumbo nucifera HOM05D008015 ORTHO05D009180 5.1e-33 145.2 198 51.5
MBI19_g08383_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 1.5e-32 143.7 177 48.0
Potri.017G131300 Populus trichocarpa HOM05D008015 ORTHO05D009180 4.3e-32 142.1 170 51.8
Cc07_g13270 Coffea canephora HOM05D008015 ORTHO05D009180 2.4e-30 136.3 171 50.3
CSS0009801 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 3.1e-30 136.0 159 55.3
CSS0018355 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 3.1e-30 136.0 159 55.3
Lalb_Chr18g0053531 Lupinus albus HOM05D008015 ORTHO05D009180 1.3e-28 130.6 146 52.1
Lalb_Chr15g0084981 Lupinus albus HOM05D008015 ORTHO05D009180 1.7e-28 130.2 168 50.0
CiPaw.03G073500 Carya illinoinensis HOM05D008015 ORTHO05D009180 2.9e-28 129.4 195 43.1
Eucgr.F02874 Eucalyptus grandis HOM05D008015 ORTHO05D009180 4.9e-28 128.6 194 43.8
MBI13_g45895_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 4.9e-28 128.6 184 43.5
Sabra17G0109400 Salix brachista HOM05D008015 ORTHO05D009180 3.2e-27 125.9 172 48.3
MSTRG.3702 Avicennia marina HOM05D008015 ORTHO05D009180 1.2e-26 124.0 164 46.3
LjContig00141g0001505 Lotus japonicus HOM05D008015 ORTHO05D009180 4.6e-26 122.1 168 45.2
Thecc.04G053900 Theobroma cacao HOM05D008015 ORTHO05D009180 6.0e-26 121.7 164 48.8
VMungo0647G1978 Vigna mungo HOM05D008015 ORTHO05D009180 3.0e-25 119.4 170 45.3
Actinidia35723 Actinidia chinensis HOM05D008015 ORTHO05D009180 5.1e-25 118.6 157 47.8
Prupe.3G166400 Prunus persica HOM05D008015 ORTHO05D009180 1.9e-24 116.7 218 40.4
Glyma.14G213100 Glycine max HOM05D008015 ORTHO05D009180 9.6e-24 114.4 172 45.9
Glyma.18G041300 Glycine max HOM05D008015 ORTHO05D009180 1.6e-23 113.6 184 42.9
MBI13_g14024_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 1.6e-23 113.6 176 41.5
Manes.02G078100 Manihot esculenta HOM05D008015 ORTHO05D009180 2.1e-23 113.2 190 42.6
Medtr3g065210 Medicago truncatula HOM05D008015 ORTHO05D009180 2.1e-23 113.2 160 43.8
TWI74G1025 Tripterygium wilfordii HOM05D008015 ORTHO05D009180 8.1e-23 111.3 163 44.2
Actinidia28799 Actinidia chinensis HOM05D008015 ORTHO05D009180 1.4e-22 110.5 158 44.9
RcHm_v2.0_Chr3g0491241 Rosa chinensis HOM05D008015 ORTHO05D009180 1.4e-22 110.5 236 37.3
Cpa.g.sc340.4 Carica papaya HOM05D008015 ORTHO05D009180 1.8e-22 110.2 183 43.7
MD09G1270500 Malus domestica HOM05D008015 ORTHO05D009180 2.4e-22 109.8 221 39.4
Lalb_Chr17g0346041 Lupinus albus HOM05D008015 ORTHO05D009180 1.5e-21 107.1 159 45.3
Sed0025761 Sechium edule HOM05D008015 ORTHO05D009180 2.0e-21 106.7 150 44.0
ATR0753G067 Amborella trichopoda HOM05D008015 ORTHO05D009180 3.4e-21 105.9 180 35.6
FAN26G1918 Fragaria x ananassa HOM05D008015 ORTHO05D009180 5.8e-21 105.1 222 36.0
TWI77G0273 Tripterygium wilfordii HOM05D008015 ORTHO05D009180 7.6e-21 104.8 142 46.5
FAN23G1273 Fragaria x ananassa HOM05D008015 ORTHO05D009180 9.9e-21 104.4 222 35.1
MELO3C022825.2 Cucumis melo HOM05D008015 ORTHO05D009180 8.4e-20 101.3 147 42.9
ClCG03G008850 Citrullus lanatus HOM05D008015 ORTHO05D009180 3.2e-19 99.4 149 43.6
TPR.G30001 Trifolium pratense HOM05D008015 ORTHO05D009180 3.2e-19 99.4 166 41.6
CsaV3_5G023910 Cucumis sativus L. HOM05D009275 ORTHO05D009180 4.2e-19 99.0 151 43.7
Rhsim10G0178500 Rhododendron simsii HOM05D008015 ORTHO05D009180 4.2e-19 99.0 177 41.8
DCAR_014163 Daucus carota HOM05D008015 ORTHO05D009180 7.1e-19 98.2 191 39.3
CDE05G1037 Ceratophyllum demersum HOM05D008015 ORTHO05D009180 1.2e-18 97.4 163 39.9
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 1.6e-18 97.1 164 40.2
Aqoxy1G02179 Aquilegia oxysepala HOM05D008015 ORTHO05D009180 2.1e-18 96.7 179 40.8
PSO478G3758 Papaver somniferum HOM05D008015 ORTHO05D009180 2.7e-18 96.3 166 42.8
SalBow5G5173 Salvia bowleyana HOM05D008015 ORTHO05D009180 2.7e-18 96.3 150 39.3
VMungo1383G2632 Vigna mungo HOM05D008015 ORTHO05D009180 1.7e-17 93.6 140 42.9
Gohir.A07G073500 Gossypium hirsutum HOM05D008015 ORTHO05D009180 2.3e-17 93.2 155 42.6
CANSAT35G1526 Cannabis sativa HOM05D008015 ORTHO05D009180 3.0e-17 92.8 186 40.3
Gohir.D07G078200 Gossypium hirsutum HOM05D008015 ORTHO05D009180 3.9e-17 92.4 154 42.2
Gorai.001G082600 Gossypium raimondii HOM05D008015 ORTHO05D009180 3.9e-17 92.4 154 42.2
Phvul.001G229400 Phaseolus vulgaris HOM05D008015 ORTHO05D009180 3.9e-17 92.4 132 42.4
SGA_v2.0_scaffold45G17152 Striga asiatica HOM05D008015 ORTHO05D009180 5.1e-17 92.0 186 39.8
Phvul.008G237600 Phaseolus vulgaris HOM05D008015 ORTHO05D009180 1.1e-16 90.9 135 43.7
MBI13_g24899_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 2.5e-16 89.7 82 56.1
Dinv28182 Davidia involucrata HOM05D008015 ORTHO05D009180 5.6e-16 88.6 171 39.8
FvH4_1g30203 Fragaria vesca HOM05D008015 ORTHO05D009180 5.6e-16 88.6 129 41.9
FAN19G3187 Fragaria x ananassa HOM05D008015 ORTHO05D009180 1.3e-15 87.4 202 33.7
Actinidia17202 Actinidia chinensis HOM05D008015 ORTHO05D009180 1.1e-14 84.3 174 36.8
Lsat_1_v5_gn_8_114880 Lactuca sativa HOM05D008015 ORTHO05D009180 1.1e-14 84.3 178 37.1
Medtr5g077940 Medicago truncatula HOM05D008015 ORTHO05D009180 2.4e-14 83.2 168 39.3
Psat2g045760 Pisum sativum HOM05D008015 ORTHO05D009180 9.0e-14 81.3 169 37.9
PGR004G2766 Punica granatum HOM05D009275 ORTHO05D009180 3.4e-13 79.3 203 33.0
arahy.Tifrunner.gnm1.ann1.NRE7W4 Arachis hypogaea HOM05D009275 ORTHO05D009180 5.8e-13 78.6 163 35.6
Glyma.11G215300 Glycine max HOM05D008015 ORTHO05D009180 7.6e-13 78.2 179 35.8
COL.COLO4_13422 Corchorus olitorius HOM05D009275 ORTHO05D009180 4.9e-12 75.5 181 33.7
BcaB06g27100 Brassica carinata HOM05D009275 ORTHO05D009180 1.1e-11 74.3 154 41.6
CARHR215350 Cardamine hirsuta HOM05D009275 ORTHO05D009180 1.9e-11 73.6 179 37.4
Thhalv10027910m.g Eutrema salsugineum HOM05D009275 ORTHO05D009180 1.9e-11 73.6 165 37.6
Lj2P519T18 Lonicera japonica HOM05D008015 ORTHO05D009180 2.4e-11 73.2 140 42.1
arahy.Tifrunner.gnm1.ann1.I66ZQ3 Arachis hypogaea HOM05D009275 ORTHO05D009180 5.4e-11 72.0 163 35.0
AL7G46310 Arabidopsis lyrata HOM05D009275 ORTHO05D009180 1.2e-10 70.9 167 38.3
A04p10720 Brassica napus HOM05D009275 ORTHO05D009180 1.2e-10 70.9 156 41.0
BraA04t16736Z Brassica rapa HOM05D009275 ORTHO05D009180 1.2e-10 70.9 156 41.0
Carub.0007s3272 Capsella rubella HOM05D009275 ORTHO05D009180 1.2e-10 70.9 98 49.0
Thhalv10019019m.g Eutrema salsugineum HOM05D009275 ORTHO05D009180 2.7e-10 69.7 119 43.7
BcaC02g09585 Brassica carinata HOM05D009275 ORTHO05D009180 3.5e-10 69.3 156 41.0
C04p44430 Brassica napus HOM05D009275 ORTHO05D009180 3.5e-10 69.3 156 41.0
BolC4t26014H Brassica oleracea HOM05D009275 ORTHO05D009180 3.5e-10 69.3 156 41.0
CARHR292200 Cardamine hirsuta HOM05D009275 ORTHO05D009180 3.5e-10 69.3 131 41.2
Sp7g04570 Schrenkiella parvula HOM05D009275 ORTHO05D009180 3.5e-10 69.3 154 40.3
AT5G37550 Arabidopsis thaliana HOM05D009275 ORTHO05D009180 1.0e-09 67.8 178 36.5
AL2G23880 Arabidopsis lyrata HOM05D009275 ORTHO05D009180 1.8e-09 67.0 125 43.2
A02p13520 Brassica napus HOM05D009275 ORTHO05D009180 6.7e-09 65.1 182 31.9
BraA02t06410Z Brassica rapa HOM05D009275 ORTHO05D009180 1.9e-08 63.5 182 31.3
Sp5g21250 Schrenkiella parvula HOM05D009275 ORTHO05D009180 1.9e-08 63.5 157 35.0
Aa31LG2G2900 Aethionema arabicum HOM05D009275 ORTHO05D009180 2.5e-08 63.2 175 35.4
Migut.K00921 Erythranthe guttata HOM05D008015 ORTHO05D009180 2.5e-08 63.2 163 32.5
Carub.0002s1218 Capsella rubella HOM05D009275 ORTHO05D009180 3.3e-08 62.8 166 36.1
AT1G66190 Arabidopsis thaliana HOM05D009275 ORTHO05D009180 7.4e-08 61.6 120 40.8
C02p21840 Brassica napus HOM05D009275 ORTHO05D009180 7.4e-08 61.6 182 31.3
BolC2t08316H Brassica oleracea HOM05D009275 ORTHO05D009180 7.4e-08 61.6 182 31.3
MBI13_g29561_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 1.3e-07 60.8 119 37.8
BcaC03g14735 Brassica carinata HOM05D009275 ORTHO05D009180 1.6e-07 60.5 181 32.0
Lsat_1_v5_gn_3_63900 Lactuca sativa HOM05D008015 ORTHO05D009180 1.6e-07 60.5 184 29.3
Aa31LG9G17500 Aethionema arabicum HOM05D009275 ORTHO05D009180 2.1e-07 60.1 166 35.5
BcaB05g24157 Brassica carinata HOM05D009275 ORTHO05D009180 2.1e-07 60.1 182 31.9
unitig_32.g11793 Utricularia gibba HOM05D008015 ORTHO05D009180 1.1e-06 57.8 98 38.8
THA.LOC104805631 Tarenaya hassleriana HOM05D009275 ORTHO05D009180 3.1e-06 56.2 50 64.0
Prupe.5G165400 Prunus persica HOM05D007505 ORTHO05D009476 5.3e-06 55.5 87 41.4


User provided reference genes

Program Settings