Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G0969 Trochodendron aralioides HOM05D007505 ORTHO05D009476 9.5e-83 310.1 151 100.0
Potri.015G084200 Populus trichocarpa HOM05D007505 ORTHO05D009476 4.2e-38 161.8 147 60.5
Dinv38525 Davidia involucrata HOM05D007505 ORTHO05D009476 2.1e-37 159.5 137 64.2
Ciclev10022689m.g Citrus clementina HOM05D007505 ORTHO05D009476 5.1e-36 154.8 152 58.6
Aqoxy5G03745 Aquilegia oxysepala HOM05D007505 ORTHO05D009476 1.5e-35 153.3 131 61.8
Sabra15G0107300 Salix brachista HOM05D007505 ORTHO05D009476 1.9e-35 152.9 139 59.0
Solyc03g112190.4 Solanum lycopersicum HOM05D002460 ORTHO05D002716 7.4e-35 151.0 145 57.9
PGSC0003DMG400018186 Solanum tuberosum HOM05D007505 ORTHO05D009476 7.4e-35 151.0 145 57.2
Sopen03g031290 Solanum pennellii HOM05D007505 ORTHO05D009476 1.6e-34 149.8 145 57.2
TAR629G2155 Trochodendron aralioides HOM05D001124 ORTHO05D001004 6.3e-34 147.9 102 72.5
Nitab4.5_0010452g0040 Nicotiana tabacum HOM05D002460 ORTHO05D002716 8.2e-34 147.5 138 53.6
Thecc.03G026000 Theobroma cacao HOM05D007505 ORTHO05D009476 1.1e-33 147.1 145 55.2
Cfa019219 Carpinus fangiana HOM05D007505 ORTHO05D009476 5.3e-33 144.8 144 55.6
Manes.06G110400 Manihot esculenta HOM05D007505 ORTHO05D009476 6.9e-33 144.4 145 57.9
CAN.G338.34 Capsicum annuum HOM05D007505 ORTHO05D009476 9.1e-33 144.1 144 53.5
Prupe.5G165400 Prunus persica HOM05D007505 ORTHO05D009476 1.2e-32 143.7 145 55.2
Cfa019221 Carpinus fangiana HOM05D007505 ORTHO05D009476 2.0e-32 142.9 144 54.9
Haze_07589 Corylus avellana HOM05D007505 ORTHO05D009476 2.6e-32 142.5 141 53.9
Oeu023645.1 Olea europaea HOM05D007505 ORTHO05D009476 3.4e-32 142.1 133 57.1
PSO675G7842 Papaver somniferum HOM05D007505 ORTHO05D009476 3.4e-32 142.1 152 55.9
Actinidia19362 Actinidia chinensis HOM05D007505 ORTHO05D009476 4.5e-32 141.7 144 54.2
PSO541G6268 Papaver somniferum HOM05D007505 ORTHO05D009476 5.9e-32 141.4 152 55.9
Gohir.A03G057100 Gossypium hirsutum HOM05D007505 ORTHO05D009476 1.1e-30 137.1 155 52.9
Rhsim08G0177900 Rhododendron simsii HOM05D007505 ORTHO05D009476 1.4e-30 136.7 147 55.8
Hma1.2p1_0046F.1_g027150 Hydrangea macrophylla HOM05D007505 ORTHO05D009476 1.9e-30 136.3 147 54.4
Atru.chr9.2580 Acer truncatum HOM05D007505 ORTHO05D009476 3.2e-30 135.6 148 50.0
RcHm_v2.0_Chr7g0192551 Rosa chinensis HOM05D007505 ORTHO05D009476 3.2e-30 135.6 144 56.9
TWI23G0126 Tripterygium wilfordii HOM05D007505 ORTHO05D009476 3.2e-30 135.6 134 56.0
Cc04_g11490 Coffea canephora HOM05D007505 ORTHO05D009476 4.2e-30 135.2 155 51.0
FvH4_5g06310 Fragaria vesca HOM05D007505 ORTHO05D009476 4.2e-30 135.2 145 54.5
Gohir.D03G109300 Gossypium hirsutum HOM05D007505 ORTHO05D009476 4.2e-30 135.2 158 51.9
Gorai.003G115400 Gossypium raimondii HOM05D007505 ORTHO05D009476 4.2e-30 135.2 158 51.9
Peaxi162Scf00089g01341 Petunia axillaris HOM05D002460 ORTHO05D002716 5.5e-30 134.8 129 56.6
QL10p006874 Quercus lobata HOM05D007505 ORTHO05D009476 5.5e-30 134.8 141 54.6
MD06G1165700 Malus domestica HOM05D007505 ORTHO05D009476 7.2e-30 134.4 141 53.2
FAN18G1005 Fragaria x ananassa HOM05D007505 ORTHO05D009476 9.4e-30 134.0 145 54.5
vmacro19295 Vaccinium macrocarpon HOM05D007505 ORTHO05D009476 1.2e-29 133.7 145 54.5
COL.COLO4_36758 Corchorus olitorius HOM05D007505 ORTHO05D009476 1.6e-29 133.3 156 50.0
Nn3g16691 Nelumbo nucifera HOM05D007505 ORTHO05D009476 1.6e-29 133.3 103 68.0
Potri.012G086000 Populus trichocarpa HOM05D007505 ORTHO05D009476 2.1e-29 132.9 136 55.1
FAN08G0495 Fragaria x ananassa HOM05D007505 ORTHO05D009476 4.6e-29 131.7 145 53.1
Nitab4.5_0000003g0840 Nicotiana tabacum HOM05D007505 ORTHO05D009476 4.6e-29 131.7 150 50.0
PGR083G2149 Punica granatum HOM05D007505 ORTHO05D009476 4.6e-29 131.7 145 49.0
Cpa.g.sc159.18 Carica papaya HOM05D007505 ORTHO05D009476 6.1e-29 131.3 142 50.7
CSS0021026 Camellia sinensis var. sinensis HOM05D007505 ORTHO05D009476 1.4e-28 130.2 124 58.1
Nitab4.5_0001793g0050 Nicotiana tabacum HOM05D002460 ORTHO05D002716 2.3e-28 129.4 122 53.3
Lalb_Chr12g0201901 Lupinus albus HOM05D007505 ORTHO05D009476 3.0e-28 129.0 147 49.7
VMungo1215G0926 Vigna mungo HOM05D007505 ORTHO05D009476 3.0e-28 129.0 143 49.0
FAN13G2123 Fragaria x ananassa HOM05D007505 ORTHO05D009476 6.7e-28 127.9 145 52.4
Nn4g22591 Nelumbo nucifera HOM05D007505 ORTHO05D009476 6.7e-28 127.9 131 55.0
Oeu040858.1 Olea europaea HOM05D007505 ORTHO05D009476 6.7e-28 127.9 142 50.7
MELO3C002298.2 Cucumis melo HOM05D007505 ORTHO05D009476 2.0e-27 126.3 135 50.4
ECA247G3499 Erigeron canadensis HOM05D007505 ORTHO05D009476 2.6e-27 125.9 140 52.1
Nitab4.5_0008713g0030 Nicotiana tabacum HOM05D007505 ORTHO05D009476 2.6e-27 125.9 145 50.3
MD14G1171300 Malus domestica HOM05D007505 ORTHO05D009476 3.3e-27 125.6 147 50.3
Migut.O00159 Erythranthe guttata HOM05D007505 ORTHO05D009476 7.4e-27 124.4 145 48.3
DCAR_021591 Daucus carota HOM05D007505 ORTHO05D009476 1.3e-26 123.6 140 52.9
Glyma.17G084500 Glycine max HOM05D007505 ORTHO05D009476 1.3e-26 123.6 137 51.1
Glyma.05G041700 Glycine max HOM05D007505 ORTHO05D009476 3.7e-26 122.1 145 49.7
SGA_v2.0_scaffold90G27839 Striga asiatica HOM05D007505 ORTHO05D009476 3.7e-26 122.1 136 50.7
ClCG03G003000 Citrullus lanatus HOM05D007505 ORTHO05D009476 1.4e-25 120.2 132 50.0
Duzib205G0367 Durio zibethinus HOM05D007505 ORTHO05D009476 4.1e-25 118.6 100 60.0
Potri.012G086300 Populus trichocarpa HOM05D007505 ORTHO05D009476 9.1e-25 117.5 110 57.3
Eucgr.B00218 Eucalyptus grandis HOM05D007505 ORTHO05D009476 2.0e-24 116.3 148 46.6
MBI16_g31776_MAGBIO Magnolia biondii HOM05D007505 ORTHO05D009476 2.0e-24 116.3 147 45.6
Psat4g060840 Pisum sativum HOM05D007505 ORTHO05D009476 2.6e-24 115.9 142 47.9
Rhsim12G0168000 Rhododendron simsii HOM05D007505 ORTHO05D009476 2.6e-24 115.9 123 52.8
CiPaw.11G019500 Carya illinoinensis HOM05D007505 ORTHO05D009476 4.5e-24 115.2 143 48.3
TPR.G37551 Trifolium pratense HOM05D007505 ORTHO05D009476 1.3e-23 113.6 149 45.6
EL10Ac5g10655 Beta vulgaris HOM05D007505 ORTHO05D009476 1.7e-23 113.2 135 48.9
CsaV3_1G008840 Cucumis sativus L. HOM05D007505 ORTHO05D009476 2.9e-23 112.5 135 46.7
AUR62028725 Chenopodium quinoa HOM05D007505 ORTHO05D009476 3.8e-23 112.1 128 52.3
HanXRQChr02g0035811 Helianthus annuus HOM05D007505 ORTHO05D009476 3.8e-23 112.1 136 49.3
Medtr4g104870 Medicago truncatula HOM05D007505 ORTHO05D009476 6.5e-23 111.3 143 49.0
Sabra12G0061800 Salix brachista HOM05D007505 ORTHO05D009476 8.5e-23 110.9 117 53.8
CANSAT80G2368 Cannabis sativa HOM05D007505 ORTHO05D009476 1.1e-22 110.5 155 43.9
SalBow5G2951 Salvia bowleyana HOM05D007505 ORTHO05D009476 1.9e-22 109.8 126 51.6
AUR62008143 Chenopodium quinoa HOM05D007505 ORTHO05D009476 2.5e-22 109.4 129 50.4
Sed0000715 Sechium edule HOM05D007505 ORTHO05D009476 3.2e-22 109.0 127 47.2
Lj4g0014699 Lotus japonicus HOM05D007505 ORTHO05D009476 9.4e-22 107.5 154 43.5
Lsat_1_v5_gn_1_27760 Lactuca sativa HOM05D007505 ORTHO05D009476 2.7e-21 105.9 129 48.8
ATR0824G199 Amborella trichopoda HOM05D007505 ORTHO05D009476 4.7e-21 105.1 131 47.3
Phvul.003G205200 Phaseolus vulgaris HOM05D007505 ORTHO05D009476 6.1e-21 104.8 104 51.0
arahy.Tifrunner.gnm1.ann1.33YNZL Arachis hypogaea HOM05D007505 ORTHO05D009476 1.4e-20 103.6 149 45.0
Dinv20598 Davidia involucrata HOM05D007505 ORTHO05D009476 1.1e-19 100.5 76 65.8
Sc04g0001500 Simmondsia chinensis HOM05D007505 ORTHO05D009476 2.6e-19 99.4 107 54.2
unitig_61.g26472 Utricularia gibba HOM05D007505 ORTHO05D009476 6.3e-18 94.7 131 44.3
Hma1.2p1_1092F.1_g255960 Hydrangea macrophylla HOM05D007505 ORTHO05D009476 1.1e-17 94.0 77 58.4
Carub.0007s1636 Capsella rubella HOM05D007505 ORTHO05D009476 2.6e-16 89.4 142 40.1
AL7G28500 Arabidopsis lyrata HOM05D007505 ORTHO05D009476 1.3e-15 87.0 141 40.4
THA.LOC104800396 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 2.2e-15 86.3 143 42.7
THA.LOC104800397 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 2.2e-15 86.3 143 42.7
THA.LOC104825178 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 5.0e-15 85.1 144 41.7
AT4G24700 Arabidopsis thaliana HOM05D007505 ORTHO05D009476 6.5e-15 84.7 123 43.9
BcaNung07358 Brassica carinata HOM05D007505 ORTHO05D009476 6.5e-15 84.7 131 40.5
A01p16040 Brassica napus HOM05D006209 ORTHO05D007645 8.5e-15 84.3 128 42.2
BolC1t01930H Brassica oleracea HOM05D006209 ORTHO05D007645 8.5e-15 84.3 125 44.0
BraA01t01538Z Brassica rapa HOM05D007505 ORTHO05D009476 8.5e-15 84.3 144 40.3
C01p20030 Brassica napus HOM05D006209 ORTHO05D007645 1.5e-14 83.6 125 42.4
BcaC09g50839 Brassica carinata HOM05D007505 ORTHO05D009476 1.9e-14 83.2 145 39.3
BraA03t14621Z Brassica rapa HOM05D000464 ORTHO05D000408 4.2e-14 82.0 137 40.9
CARHR232080 Cardamine hirsuta HOM05D007505 ORTHO05D009476 5.5e-14 81.6 141 40.4
Duzib068G0261 Durio zibethinus HOM05D007505 ORTHO05D009476 5.5e-14 81.6 75 57.3
Thhalv10026466m.g Eutrema salsugineum HOM05D007505 ORTHO05D009476 5.5e-14 81.6 126 41.3
BolC7t45867H Brassica oleracea HOM05D000464 ORTHO05D000408 1.2e-13 80.5 127 39.4
A03p55480 Brassica napus HOM05D007505 ORTHO05D009476 8.0e-13 77.8 127 39.4
Os02g0595200 Oryza sativa ssp. japonica HOM05D007505 ORTHO05D009476 2.3e-12 76.3 162 35.2
Zm00001eb246040 Zea mays HOM05D007505 ORTHO05D009476 9.7e-11 70.9 147 36.7
HPP92_004606 Vanilla planifolia HOM05D007505 ORTHO05D009476 3.1e-09 65.9 87 40.2
BcaC06g32867 Brassica carinata HOM05D007505 ORTHO05D009476 1.1e-06 57.4 104 39.4
VMungo1383G2632 Vigna mungo HOM05D008015 ORTHO05D009180 1.5e-06 57.0 139 32.4
Glyma.18G041300 Glycine max HOM05D008015 ORTHO05D009180 1.9e-06 56.6 142 31.0
Phvul.001G229400 Phaseolus vulgaris HOM05D008015 ORTHO05D009180 1.9e-06 56.6 136 30.9


User provided reference genes

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