Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G0886 Trochodendron aralioides HOM05D007119 ORTHO05D009220 2.6e-261 904.8 452 100.0
TAR629G0375 Trochodendron aralioides HOM05D007119 ORTHO05D009220 5.9e-221 770.8 445 85.4
Dinv14769 Davidia involucrata HOM05D007119 ORTHO05D009220 2.9e-199 698.7 445 76.9
GSVIVG01010292001 Vitis vinifera HOM05D007119 ORTHO05D009220 1.5e-192 676.4 445 74.8
Manes.13G018700 Manihot esculenta HOM05D007119 ORTHO05D009220 2.0e-192 676.0 445 72.6
Nn3g16605 Nelumbo nucifera HOM05D007119 ORTHO05D009220 7.5e-192 674.1 448 73.2
Thecc.02G269100 Theobroma cacao HOM05D007119 ORTHO05D009220 4.9e-191 671.4 447 72.7
COL.COLO4_23551 Corchorus olitorius HOM05D007119 ORTHO05D009220 3.5e-189 665.2 445 72.4
CSS0010905 Camellia sinensis var. sinensis HOM05D007119 ORTHO05D009220 7.8e-189 664.1 445 73.3
CiPaw.05G175700 Carya illinoinensis HOM05D007119 ORTHO05D009220 7.8e-189 664.1 445 72.4
Potri.008G181500 Populus trichocarpa HOM05D007119 ORTHO05D009220 6.6e-188 661.0 443 73.8
Eucgr.H04699 Eucalyptus grandis HOM05D007119 ORTHO05D009220 1.9e-187 659.4 445 71.5
Gohir.D12G151200 Gossypium hirsutum HOM05D007119 ORTHO05D009220 7.3e-187 657.5 445 71.5
Gorai.008G162700 Gossypium raimondii HOM05D007119 ORTHO05D009220 1.2e-186 656.8 445 71.5
Actinidia15126 Actinidia chinensis HOM05D007119 ORTHO05D009220 4.0e-185 651.7 445 72.6
Hma1.2p1_0079F.1_g041390 Hydrangea macrophylla HOM05D007119 ORTHO05D009220 2.0e-184 649.4 446 72.6
QL03p055873 Quercus lobata HOM05D007119 ORTHO05D009220 4.4e-184 648.3 445 71.0
Duzib248G1022 Durio zibethinus HOM05D007119 ORTHO05D009220 6.4e-183 644.4 445 70.8
Prupe.1G238900 Prunus persica HOM05D007119 ORTHO05D009220 1.6e-181 639.8 446 71.7
FvH4_4g24980 Fragaria vesca HOM05D007119 ORTHO05D009220 2.7e-181 639.0 445 71.0
RcHm_v2.0_Chr4g0432041 Rosa chinensis HOM05D007119 ORTHO05D009220 5.1e-180 634.8 445 69.4
Ciclev10031444m.g Citrus clementina HOM05D007119 ORTHO05D009220 6.6e-180 634.4 444 68.7
Atru.chr11.2204 Acer truncatum HOM05D007119 ORTHO05D009220 2.5e-179 632.5 438 70.1
Haze_12309 Corylus avellana HOM05D007119 ORTHO05D009220 1.2e-178 630.2 514 63.6
PSO017G0770 Papaver somniferum HOM05D007119 ORTHO05D009220 1.6e-178 629.8 442 69.7
Aqoxy3G01324 Aquilegia oxysepala HOM05D007119 ORTHO05D009220 3.1e-177 625.5 443 68.2
CANSAT01G1522 Cannabis sativa HOM05D007119 ORTHO05D009220 3.1e-177 625.5 447 69.4
vmacro16153 Vaccinium macrocarpon HOM05D007119 ORTHO05D009220 3.1e-177 625.5 494 65.4
Gorai.005G173800 Gossypium raimondii HOM05D007119 ORTHO05D009220 7.6e-176 620.9 446 67.7
TWI36G1063 Tripterygium wilfordii HOM05D007119 ORTHO05D009220 4.9e-175 618.2 448 67.0
MD13G1107500 Malus domestica HOM05D007119 ORTHO05D009220 3.2e-174 615.5 447 69.6
CAN.G49.9 Capsicum annuum HOM05D007119 ORTHO05D009220 6.0e-173 611.3 445 67.6
Medtr3g086170 Medicago truncatula HOM05D007119 ORTHO05D009220 1.0e-172 610.5 442 67.6
Glyma.11G245800 Glycine max HOM05D007119 ORTHO05D009220 1.3e-172 610.1 445 67.9
THA.LOC104825682 Tarenaya hassleriana HOM05D007119 ORTHO05D009220 5.1e-172 608.2 444 65.5
Sc14g0008910 Simmondsia chinensis HOM05D007119 ORTHO05D009220 6.6e-172 607.8 445 64.5
Lalb_Chr23g0277791 Lupinus albus HOM05D007119 ORTHO05D009220 8.7e-172 607.4 445 68.1
TPR.G14230 Trifolium pratense HOM05D007119 ORTHO05D009220 8.7e-172 607.4 457 66.5
Gohir.A12G146600 Gossypium hirsutum HOM05D007119 ORTHO05D009220 1.9e-171 606.3 450 66.9
ATR0824G105 Amborella trichopoda HOM05D007119 ORTHO05D009220 5.6e-171 604.7 445 65.6
Cc11_g16270 Coffea canephora HOM05D007119 ORTHO05D009220 7.3e-171 604.4 445 66.5
Sed0010682 Sechium edule HOM05D007119 ORTHO05D009220 1.2e-170 603.6 445 66.7
Sabra08G0138500 Salix brachista HOM05D007119 ORTHO05D009220 2.8e-170 602.4 540 59.3
Glyma.18G011400 Glycine max HOM05D007119 ORTHO05D009220 3.6e-170 602.1 445 67.4
Gohir.A03G131100 Gossypium hirsutum HOM05D007119 ORTHO05D009220 6.2e-170 601.3 446 65.9
CsaV3_5G030670 Cucumis sativus L. HOM05D007119 ORTHO05D009220 1.1e-169 600.5 445 66.3
MD16G1107500 Malus domestica HOM05D007119 ORTHO05D009220 2.4e-169 599.4 447 67.6
Nn4g22487 Nelumbo nucifera HOM05D007119 ORTHO05D009220 2.4e-169 599.4 372 76.3
Carub.0005s0397 Capsella rubella HOM05D007119 ORTHO05D009220 5.2e-169 598.2 443 65.7
arahy.Tifrunner.gnm1.ann1.3UY64B Arachis hypogaea HOM05D007119 ORTHO05D009220 1.5e-168 596.7 444 65.1
arahy.Tifrunner.gnm1.ann1.U7Q0BA Arachis hypogaea HOM05D007119 ORTHO05D009220 1.5e-168 596.7 444 65.1
Lj6g0003042 Lotus japonicus HOM05D007119 ORTHO05D009220 5.8e-168 594.7 445 65.6
Phvul.001G257500 Phaseolus vulgaris HOM05D007119 ORTHO05D009220 1.3e-167 593.6 445 66.3
AL5G14790 Arabidopsis lyrata HOM05D007119 ORTHO05D009220 8.4e-167 590.9 445 64.5
AT3G26090 Arabidopsis thaliana HOM05D007119 ORTHO05D009220 1.9e-166 589.7 444 64.0
MSTRG.13331 Avicennia marina HOM05D007119 ORTHO05D009220 3.2e-166 589.0 445 64.5
Aa31LG2G6270 Aethionema arabicum HOM05D007119 ORTHO05D009220 9.3e-166 587.4 443 63.7
Migut.E00228 Erythranthe guttata HOM05D007119 ORTHO05D009220 2.7e-165 585.9 446 66.1
CARHR147090 Cardamine hirsuta HOM05D007119 ORTHO05D009220 6.6e-164 581.3 445 64.5
Gohir.D02G154800 Gossypium hirsutum HOM05D007119 ORTHO05D009220 8.7e-164 580.9 397 71.0
DCAR_007027 Daucus carota HOM05D007119 ORTHO05D009220 1.3e-162 577.0 444 64.2
Solyc05g014160.4 Solanum lycopersicum HOM05D007119 ORTHO05D009220 2.4e-161 572.8 425 66.6
VMungo1383G3713 Vigna mungo HOM05D007119 ORTHO05D009220 2.4e-161 572.8 445 64.9
Sp2g15290 Schrenkiella parvula HOM05D007119 ORTHO05D009220 3.1e-161 572.4 445 63.4
Lsat_1_v5_gn_8_150440 Lactuca sativa HOM05D007119 ORTHO05D009220 4.0e-161 572.0 445 62.5
HanXRQChr12g0372081 Helianthus annuus HOM05D007119 ORTHO05D009220 9.0e-161 570.9 445 62.9
FAN22G2246 Fragaria x ananassa HOM05D007119 ORTHO05D009220 5.8e-160 568.2 435 66.9
BcaC06g31092 Brassica carinata HOM05D007119 ORTHO05D009220 7.6e-160 567.8 445 63.1
A06p42260 Brassica napus HOM05D007119 ORTHO05D009220 2.9e-159 565.8 443 62.8
BraA06t27142Z Brassica rapa HOM05D007119 ORTHO05D009220 2.9e-159 565.8 443 62.8
BraA09t38102Z Brassica rapa HOM05D007119 ORTHO05D009220 4.9e-159 565.1 444 62.2
BcaB07g30623 Brassica carinata HOM05D007119 ORTHO05D009220 1.4e-158 563.5 446 61.7
BcaC04g21404 Brassica carinata HOM05D007119 ORTHO05D009220 2.4e-158 562.8 444 61.7
BolC9t56067H Brassica oleracea HOM05D007119 ORTHO05D009220 2.4e-158 562.8 444 61.7
A09p25150 Brassica napus HOM05D007119 ORTHO05D009220 5.4e-158 561.6 444 61.7
BcaC06g33928 Brassica carinata HOM05D007119 ORTHO05D009220 7.1e-158 561.2 443 62.1
ECA233G0282 Erigeron canadensis HOM05D007119 ORTHO05D009220 9.3e-158 560.8 424 63.7
C09p32210 Brassica napus HOM05D007119 ORTHO05D009220 2.1e-157 559.7 444 61.5
C07p35060 Brassica napus HOM05D007119 ORTHO05D009220 3.5e-157 558.9 443 62.1
BolC7t44037H Brassica oleracea HOM05D007119 ORTHO05D009220 7.9e-157 557.8 443 61.9
Hund25421 Selenicereus undatus HOM05D007119 ORTHO05D009220 1.8e-156 556.6 457 60.8
SalBow8G1200 Salvia bowleyana HOM05D007119 ORTHO05D009220 7.4e-155 551.2 419 63.2
Ah.03g133650 Amaranthus hybridus HOM05D007119 ORTHO05D009220 2.0e-152 543.1 445 58.4
AUR62024193 Chenopodium quinoa HOM05D007119 ORTHO05D009220 7.6e-152 541.2 463 58.3
Lj6C818G13 Lonicera japonica HOM05D007119 ORTHO05D009220 1.2e-149 533.9 432 65.0
Peaxi162Scf00128g00648 Petunia axillaris HOM05D007119 ORTHO05D009220 1.8e-148 530.0 384 68.2
Psat5g093400 Pisum sativum HOM05D007119 ORTHO05D009220 2.1e-146 523.1 380 68.7
Thhalv10004169m.g Eutrema salsugineum HOM05D007119 ORTHO05D009220 5.5e-142 508.4 380 65.8
ClCG05G026170 Citrullus lanatus HOM05D007119 ORTHO05D009220 7.1e-142 508.1 455 58.7
SGA_v2.0_scaffold87G27113 Striga asiatica HOM05D007119 ORTHO05D009220 2.2e-138 496.5 396 62.4
EL10As2g23223 Beta vulgaris HOM05D007119 ORTHO05D009220 9.0e-137 491.1 457 55.1
BcaC06g31096 Brassica carinata HOM05D007119 ORTHO05D009220 2.0e-128 463.4 442 55.2
Oeu012665.1 Olea europaea HOM05D007119 ORTHO05D009220 1.9e-126 456.8 313 68.4
MELO3C011902.2 Cucumis melo HOM05D007119 ORTHO05D009220 1.1e-123 447.6 454 53.5
Nitab4.5_0002688g0040 Nicotiana tabacum HOM05D007119 ORTHO05D009220 1.5e-123 447.2 334 67.4
SEGI_05094 Sequoiadendron giganteum HOM05D007119 ORTHO05D009220 4.5e-120 435.6 400 54.8
Sopen05g009180 Solanum pennellii HOM05D007119 ORTHO05D009220 1.5e-110 404.1 304 67.1
Ca_16499_v3 Cicer arietinum L. HOM05D007119 ORTHO05D009220 1.5e-107 394.0 292 67.8
MBI08_g43995_MAGBIO Magnolia biondii HOM05D007119 ORTHO05D009220 2.9e-95 353.2 241 73.9
MBI08_g44099_MAGBIO Magnolia biondii HOM05D007119 ORTHO05D009220 2.9e-95 353.2 241 73.9
AUR62005541 Chenopodium quinoa HOM05D007119 ORTHO05D009220 8.0e-93 345.1 308 57.1
AagrBONN_evm.TU.Sc2ySwM_117.1226 Anthoceros agrestis HOM05D001585 ORTHO05D001677 1.2e-88 331.3 437 42.6
Nitab4.5_0000041g0220 Nicotiana tabacum HOM05D007119 ORTHO05D009220 1.9e-73 280.8 209 68.9
PGSC0003DMG401010743 Solanum tuberosum HOM05D007119 ORTHO05D009220 1.6e-72 277.7 184 75.5
SMO165G0024 Selaginella moellendorffii HOM05D007119 ORTHO05D009220 6.0e-72 275.8 371 41.2
HanXRQChr08g0208021 Helianthus annuus HOM05D007119 ORTHO05D009220 8.9e-68 261.9 215 62.3
CANSAT25G1465 Cannabis sativa HOM05D007119 ORTHO05D009220 4.2e-25 120.2 102 61.8
HanXRQChr08g0208031 Helianthus annuus HOM05D007119 ORTHO05D009220 4.8e-21 106.7 87 64.4
Nitab4.5_0002688g0050 Nicotiana tabacum HOM05D007119 ORTHO05D036862 2.5e-17 94.4 68 63.2
Nitab4.5_0000041g0230 Nicotiana tabacum HOM05D007119 ORTHO05D036862 3.2e-17 94.0 68 63.2
Peaxi162Scf00128g00647 Petunia axillaris HOM05D007119 ORTHO05D036862 9.7e-14 82.4 80 48.8


User provided reference genes

Program Settings