Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G0811 Trochodendron aralioides HOM05D005950 ORTHO05D008673 1.2e-178 629.8 328 100.0
TAR629G3081 Trochodendron aralioides HOM05D005950 ORTHO05D008673 5.8e-125 451.4 292 80.8
QL03p049137 Quercus lobata HOM05D005950 ORTHO05D008673 1.7e-113 413.3 288 75.3
CiPaw.05G101200 Carya illinoinensis HOM05D005950 ORTHO05D008673 6.2e-111 404.8 254 80.3
Haze_12503 Corylus avellana HOM05D005950 ORTHO05D008673 2.0e-109 399.8 269 77.3
Manes.08G101200 Manihot esculenta HOM05D005950 ORTHO05D008673 2.0e-109 399.8 249 79.9
Aqoxy5G03108 Aquilegia oxysepala HOM05D005950 ORTHO05D008673 2.6e-109 399.4 266 80.1
GSVIVG01001090001 Vitis vinifera HOM05D005950 ORTHO05D008673 7.6e-109 397.9 277 75.8
MBI10_g32324_MAGBIO Magnolia biondii HOM05D005950 ORTHO05D008673 1.3e-108 397.1 288 72.9
CSS0041196 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 9.2e-107 391.0 244 80.7
Dinv03756 Davidia involucrata HOM05D005950 ORTHO05D008673 9.2e-107 391.0 256 77.3
CSS0009236 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 2.1e-106 389.8 244 80.3
Thecc.02G192100 Theobroma cacao HOM05D005950 ORTHO05D008673 2.7e-106 389.4 274 72.3
Eucgr.B03560 Eucalyptus grandis HOM05D005950 ORTHO05D008673 3.5e-106 389.0 248 78.6
Atru.chr12.1419 Acer truncatum HOM05D005950 ORTHO05D008673 4.6e-106 388.7 253 77.5
MELO3C022359.2 Cucumis melo HOM05D005950 ORTHO05D008673 1.7e-105 386.7 264 75.4
Prupe.1G214800 Prunus persica HOM05D005950 ORTHO05D008673 1.7e-105 386.7 266 73.7
MD13G1130900 Malus domestica HOM05D005950 ORTHO05D008673 3.0e-105 386.0 268 72.8
RhsimUnG0153300 Rhododendron simsii HOM05D005950 ORTHO05D008673 3.0e-105 386.0 250 77.6
FvH4_4g22640 Fragaria vesca HOM05D005950 ORTHO05D008673 3.9e-105 385.6 264 74.6
Rhsim12G0072500 Rhododendron simsii HOM05D005950 ORTHO05D008673 3.9e-105 385.6 250 77.6
FAN12G2095 Fragaria x ananassa HOM05D005950 ORTHO05D008673 5.1e-105 385.2 264 74.2
PGR102G2360 Punica granatum HOM05D005950 ORTHO05D008673 6.6e-105 384.8 265 74.0
COL.COLO4_36001 Corchorus olitorius HOM05D005950 ORTHO05D008673 1.1e-104 384.0 262 74.4
Duzib248G1270 Durio zibethinus HOM05D005950 ORTHO05D008673 1.1e-104 384.0 254 75.2
CsaV3_6G007730 Cucumis sativus L. HOM05D005950 ORTHO05D008673 1.9e-104 383.3 265 73.2
FAN07G2488 Fragaria x ananassa HOM05D005950 ORTHO05D008673 1.9e-104 383.3 264 74.2
TWI36G0089 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 2.5e-104 382.9 268 72.4
FAN17G1731 Fragaria x ananassa HOM05D005950 ORTHO05D008673 3.3e-104 382.5 264 73.9
Gorai.002G021400 Gossypium raimondii HOM05D005950 ORTHO05D008673 5.6e-104 381.7 258 72.9
RcHm_v2.0_Chr4g0428871 Rosa chinensis HOM05D005950 ORTHO05D008673 5.6e-104 381.7 256 75.4
Gohir.A01G020600 Gossypium hirsutum HOM05D005950 ORTHO05D008673 1.6e-103 380.2 258 72.9
Ciclev10005525m.g Citrus clementina HOM05D005950 ORTHO05D008673 2.8e-103 379.4 244 78.7
vmacro16072 Vaccinium macrocarpon HOM05D005950 ORTHO05D008673 6.2e-103 378.3 283 71.7
Potri.001G100300 Populus trichocarpa HOM05D005950 ORTHO05D008673 3.1e-102 375.9 242 78.1
Actinidia33998 Actinidia chinensis HOM05D005950 ORTHO05D008673 5.2e-102 375.2 257 75.5
Sed0005763 Sechium edule HOM05D005950 ORTHO05D008673 1.5e-101 373.6 262 72.1
Peaxi162Scf00023g00931 Petunia axillaris HOM05D005950 ORTHO05D008673 5.8e-101 371.7 249 74.3
Aa31sc45G70 Aethionema arabicum HOM05D005950 ORTHO05D008673 4.9e-100 368.6 258 73.6
Lalb_Chr06g0164721 Lupinus albus HOM05D005950 ORTHO05D008673 4.9e-100 368.6 244 74.2
Cpa.g.sc182.2 Carica papaya HOM05D005950 ORTHO05D008673 8.4e-100 367.9 248 75.8
THA.LOC104820536 Tarenaya hassleriana HOM05D005950 ORTHO05D008673 8.4e-100 367.9 246 74.8
PSO017G6070 Papaver somniferum HOM05D005950 ORTHO05D008673 1.1e-99 367.5 272 70.6
PSO478G4484 Papaver somniferum HOM05D005950 ORTHO05D008673 1.1e-99 367.5 293 67.6
Phvul.007G000300 Phaseolus vulgaris HOM05D005950 ORTHO05D008673 1.1e-99 367.5 256 73.0
Hma1.2p1_0660F.1_g197630 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 1.4e-99 367.1 239 76.2
BolC5t31407H Brassica oleracea HOM05D005950 ORTHO05D008673 5.4e-99 365.2 252 74.6
Hund27394 Selenicereus undatus HOM05D005950 ORTHO05D008673 5.4e-99 365.2 244 73.0
Ah.03g135560 Amaranthus hybridus HOM05D005950 ORTHO05D008673 7.1e-99 364.8 274 68.2
ATR0582G132 Amborella trichopoda HOM05D005950 ORTHO05D008673 7.1e-99 364.8 270 68.1
BcaC05g26819 Brassica carinata HOM05D005950 ORTHO05D008673 9.3e-99 364.4 252 74.6
Lsat_1_v5_gn_3_32320 Lactuca sativa HOM05D005950 ORTHO05D008673 9.3e-99 364.4 246 74.4
C05p26890 Brassica napus HOM05D005950 ORTHO05D008673 4.6e-98 362.1 253 74.3
Carub.0001s2657 Capsella rubella HOM05D005950 ORTHO05D008673 6.0e-98 361.7 253 71.5
Cc11_g15000 Coffea canephora HOM05D005950 ORTHO05D008673 1.0e-97 360.9 257 71.2
LjContig00470g0001843 Lotus japonicus HOM05D005950 ORTHO05D008673 1.0e-97 360.9 249 72.3
A09p37910 Brassica napus HOM05D005950 ORTHO05D008673 1.3e-97 360.5 253 74.3
CAN.G624.24 Capsicum annuum HOM05D005950 ORTHO05D008673 1.7e-97 360.1 247 71.7
Nitab4.5_0006153g0020 Nicotiana tabacum HOM05D005950 ORTHO05D008673 1.7e-97 360.1 244 73.0
TPR.G7754 Trifolium pratense HOM05D005950 ORTHO05D008673 2.3e-97 359.8 273 68.9
BraA09t39303Z Brassica rapa HOM05D005950 ORTHO05D008673 3.0e-97 359.4 253 73.9
AL1G41670 Arabidopsis lyrata HOM05D005950 ORTHO05D008673 6.6e-97 358.2 253 71.1
AT1G28140 Arabidopsis thaliana HOM05D005950 ORTHO05D008673 8.7e-97 357.8 253 70.8
Thhalv10008446m.g Eutrema salsugineum HOM05D005950 ORTHO05D008673 8.7e-97 357.8 252 70.2
BcaB07g32425 Brassica carinata HOM05D005950 ORTHO05D008673 1.1e-96 357.5 252 73.4
Sc19g0003090 Simmondsia chinensis HOM05D005950 ORTHO05D008673 1.1e-96 357.5 258 69.8
DCAR_024633 Daucus carota HOM05D000512 ORTHO05D008673 2.5e-96 356.3 246 71.1
HanXRQChr06g0175111 Helianthus annuus HOM05D005950 ORTHO05D008673 4.3e-96 355.5 250 72.0
Sp1g24330 Schrenkiella parvula HOM05D005950 ORTHO05D008673 4.3e-96 355.5 254 71.3
HPP92_007045 Vanilla planifolia HOM05D005950 ORTHO05D008673 1.3e-95 354.0 243 71.6
VMungo0720G2460 Vigna mungo HOM05D005950 ORTHO05D008673 1.3e-95 354.0 245 71.8
CDE02G3863 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 2.1e-95 353.2 227 76.7
Medtr1g099520 Medicago truncatula HOM05D005950 ORTHO05D008673 2.1e-95 353.2 263 69.2
Nitab4.5_0000208g0380 Nicotiana tabacum HOM05D005950 ORTHO05D008673 3.6e-95 352.4 242 72.3
PGSC0003DMG400028387 Solanum tuberosum HOM05D005950 ORTHO05D008673 4.8e-95 352.1 246 70.3
Migut.K01055 Erythranthe guttata HOM05D005950 ORTHO05D008673 6.2e-95 351.7 264 70.1
SalBow2G0445 Salvia bowleyana HOM05D005950 ORTHO05D008673 6.2e-95 351.7 252 71.0
Solyc05g012700.3 Solanum lycopersicum HOM05D005950 ORTHO05D008673 8.1e-95 351.3 247 69.6
AUR62005715 Chenopodium quinoa HOM05D005950 ORTHO05D008673 1.1e-94 350.9 274 66.1
arahy.Tifrunner.gnm1.ann1.MTDN4F Arachis hypogaea HOM05D005950 ORTHO05D008673 1.4e-94 350.5 291 62.5
Sopen05g007530 Solanum pennellii HOM05D005950 ORTHO05D008673 1.8e-94 350.1 247 69.2
Sabra01G0075200 Salix brachista HOM05D005950 ORTHO05D008673 2.4e-94 349.7 298 64.1
CARHR027610 Cardamine hirsuta HOM05D005950 ORTHO05D008673 2.0e-93 346.7 251 70.5
Oeu027106.1 Olea europaea HOM05D005950 ORTHO05D008673 2.6e-93 346.3 254 69.7
CANSAT01G2759 Cannabis sativa HOM05D005950 ORTHO05D008673 4.9e-92 342.0 241 72.2
Os03g0850600 Oryza sativa ssp. japonica HOM05D005950 ORTHO05D008673 5.4e-91 338.6 225 75.6
EL10Ac6g13611 Beta vulgaris HOM05D005950 ORTHO05D008673 7.1e-91 338.2 249 66.7
MSTRG.8054 Avicennia marina HOM05D005950 ORTHO05D008673 1.2e-90 337.4 254 68.5
SGA_v2.0_scaffold157G37356 Striga asiatica HOM05D005950 ORTHO05D008673 6.0e-90 335.1 284 63.7
ClCG06G001700 Citrullus lanatus HOM05D005950 ORTHO05D008673 2.3e-89 333.2 264 67.4
Zm00001eb064540 Zea mays HOM05D005950 ORTHO05D008673 2.1e-87 326.6 231 70.6
Mapoly0027s0093 Marchantia polymorpha HOM05D005950 ORTHO05D008673 3.4e-85 319.3 264 60.2
Pp3c8_12800 Physcomitrium patens HOM05D005950 ORTHO05D008673 1.4e-83 313.9 238 65.1
Psat6g195320 Pisum sativum HOM05D005950 ORTHO05D008673 5.5e-83 312.0 227 70.5
Glyma.20G249800 Glycine max HOM05D005950 ORTHO05D008673 1.6e-82 310.5 215 73.5
unitig_747.g21110 Utricularia gibba HOM05D005950 ORTHO05D008673 1.6e-82 310.5 252 65.1
Ca_10708_v3 Cicer arietinum L. HOM05D005950 ORTHO05D008673 1.8e-81 307.0 212 72.6
Lj3A1077T57 Lonicera japonica HOM05D005950 ORTHO05D008673 2.5e-80 303.1 204 77.0
SEGI_01129 Sequoiadendron giganteum HOM05D005950 ORTHO05D008673 2.5e-80 303.1 208 71.2
SMO367G1143 Selaginella moellendorffii HOM05D005950 ORTHO05D008673 3.3e-80 302.8 264 58.7
Duzib052G0358 Durio zibethinus HOM05D005950 ORTHO05D008673 7.4e-80 301.6 207 75.8
AagrBONN_evm.TU.Sc2ySwM_344.2741 Anthoceros agrestis HOM05D005950 ORTHO05D008673 9.6e-80 301.2 241 63.5
CBR_g3659 Chara braunii HOM05D005950 ORTHO05D008673 1.7e-76 290.4 246 61.0
arahy.Tifrunner.gnm1.ann1.PXY63F Arachis hypogaea HOM05D005950 ORTHO05D008673 1.0e-73 281.2 257 58.4
Nn3g16271 Nelumbo nucifera HOM05D005950 ORTHO05D008673 1.0e-73 281.2 261 59.4
AUR62028840 Chenopodium quinoa HOM05D005950 ORTHO05D008673 8.2e-71 271.6 206 68.0
Hma1.2p1_0660F.1_g197620 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 9.0e-70 268.1 180 74.4
CDE06G2125 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 1.3e-60 237.7 149 78.5
MCO02G210 Micromonas commoda HOM05D005950 ORTHO05D008673 3.2e-51 206.5 216 50.5
TWI18G1378 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 7.4e-48 195.3 149 67.1
Cre04.g228450 Chlamydomonas reinhardtii HOM05D005950 ORTHO05D008673 5.9e-45 185.7 223 47.5
PRCOL_00003015 Prasinoderma coloniale HOM05D005950 ORTHO05D008673 2.1e-42 177.2 215 44.2
Gohir.D01G019100 Gossypium hirsutum HOM05D005950 ORTHO05D008673 7.7e-37 158.7 121 64.5
TPR.G36353 Trifolium pratense HOM05D005950 ORTHO05D008673 6.3e-31 139.0 86 77.9
Peaxi162Scf00040g00101 Petunia axillaris HOM05D005950 ORTHO05D008673 1.1e-27 128.3 136 52.9
MD16G1141000 Malus domestica HOM05D005950 ORTHO05D020170 5.4e-22 109.4 69 75.4
Zm00001eb422050 Zea mays HOM05D005950 ORTHO05D008673 2.9e-20 103.6 83 60.2
FAN20G0916 Fragaria x ananassa HOM05D005950 ORTHO05D020170 4.3e-19 99.8 67 74.6
Zm00001eb141620 Zea mays HOM05D005950 ORTHO05D444810 1.2e-18 98.2 68 66.2
FAN25G3256 Fragaria x ananassa HOM05D005950 ORTHO05D203075 1.6e-18 97.8 111 51.4
Hma1.2p1_0660F.1_g197640 Hydrangea macrophylla HOM05D005950 ORTHO05D020170 1.6e-18 97.8 56 80.4
Peaxi162Scf00003g00713 Petunia axillaris HOM05D005950 ORTHO05D305722 4.9e-15 86.3 136 40.4
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 4.9e-15 86.3 63 63.5
CDE06G1299 Ceratophyllum demersum HOM05D005950 ORTHO05D130736 2.0e-13 80.9 71 63.4
AL1G56270 Arabidopsis lyrata HOM05D005950 ORTHO05D000283 2.7e-13 80.5 63 63.5
C05p26860 Brassica napus HOM05D005950 ORTHO05D020170 5.9e-13 79.3 51 76.5
Peaxi162Scf00059g01815 Petunia axillaris HOM05D005950 ORTHO05D306406 5.9e-13 79.3 170 34.7
Glyma.10G298600 Glycine max HOM05D005950 ORTHO05D020170 2.3e-12 77.4 47 74.5
BolC5t31405H Brassica oleracea HOM05D005950 ORTHO05D020170 6.6e-12 75.9 62 64.5
A09p37930 Brassica napus HOM05D005950 ORTHO05D020170 9.5e-11 72.0 53 67.9
Peaxi162Scf00968g00313 Petunia axillaris HOM05D005950 ORTHO05D305879 3.6e-10 70.1 103 43.7
Peaxi162Scf00141g00098 Petunia axillaris HOM05D005950 ORTHO05D306108 9.8e-08 62.0 43 67.4
AL4G33820 Arabidopsis lyrata HOM05D005950 ORTHO05D080589 4.9e-07 59.7 83 41.0


User provided reference genes

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