Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G0785 Trochodendron aralioides HOM05D004908 ORTHO05D006418 1.8e-190 669.1 336 100.0
Nn4g23471 Nelumbo nucifera HOM05D004908 ORTHO05D006418 2.0e-117 426.4 340 66.5
Dinv17436 Davidia involucrata HOM05D004908 ORTHO05D006418 2.1e-106 389.8 339 60.2
CSS0022679 Camellia sinensis var. sinensis HOM05D004908 ORTHO05D006418 1.1e-102 377.5 339 59.3
Hma1.2p1_0060F.1_g032940 Hydrangea macrophylla HOM05D004908 ORTHO05D006418 7.8e-101 371.3 339 61.4
Cfa019355 Carpinus fangiana HOM05D004908 ORTHO05D006418 1.7e-100 370.2 344 61.9
Prupe.5G207300 Prunus persica HOM05D004908 ORTHO05D006418 2.5e-99 366.3 346 57.2
Aqoxy3G03654 Aquilegia oxysepala HOM05D004908 ORTHO05D006418 4.3e-99 365.5 339 59.9
QL10p019966 Quercus lobata HOM05D004908 ORTHO05D006418 1.2e-98 364.0 349 58.7
Gorai.008G298500 Gossypium raimondii HOM05D004908 ORTHO05D006418 1.4e-97 360.5 337 58.8
Gohir.A12G276800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.8e-97 360.1 337 58.8
CiPaw.12G009100 Carya illinoinensis HOM05D004908 ORTHO05D006418 2.3e-97 359.8 342 58.8
GSVIVG01008119001 Vitis vinifera HOM05D004908 ORTHO05D006418 1.2e-96 357.5 340 56.2
Haze_07746 Corylus avellana HOM05D004908 ORTHO05D006418 4.4e-96 355.5 373 57.4
Thecc.03G001900 Theobroma cacao HOM05D004908 ORTHO05D006418 4.4e-96 355.5 345 57.7
RcHm_v2.0_Chr7g0183321 Rosa chinensis HOM05D004908 ORTHO05D006418 3.7e-95 352.4 343 55.7
Potri.006G227300 Populus trichocarpa HOM05D004908 ORTHO05D006418 7.0e-94 348.2 338 56.2
Manes.14G087300 Manihot esculenta HOM05D004908 ORTHO05D006418 2.0e-93 346.7 347 55.6
FvH4_5g13640 Fragaria vesca HOM05D004908 ORTHO05D006418 1.0e-92 344.4 350 54.3
Cpa.g.sc94.75 Carica papaya HOM05D004908 ORTHO05D006418 5.6e-91 338.6 340 53.8
Atru.chr9.517 Acer truncatum HOM05D004908 ORTHO05D006418 7.3e-91 338.2 335 54.9
MD14G1214000 Malus domestica HOM05D004908 ORTHO05D006418 4.7e-90 335.5 276 63.4
TWI81G0201 Tripterygium wilfordii HOM05D004908 ORTHO05D006418 6.2e-90 335.1 338 58.0
Ciclev10021158m.g Citrus clementina HOM05D004908 ORTHO05D006418 8.0e-90 334.7 339 54.9
Gohir.D12G277800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.8e-89 333.6 332 55.4
CANSAT80G1354 Cannabis sativa HOM05D004908 ORTHO05D006418 2.0e-88 330.1 339 53.7
Rhsim08G0143800 Rhododendron simsii HOM05D004908 ORTHO05D006418 2.6e-88 329.7 373 49.6
A06p14680 Brassica napus HOM05D004908 ORTHO05D006418 3.4e-88 329.3 285 60.0
BraA06t24593Z Brassica rapa HOM05D004908 ORTHO05D006418 3.4e-88 329.3 285 60.0
Cc00_g03370 Coffea canephora HOM05D004908 ORTHO05D006418 3.4e-88 329.3 351 53.3
Sabra06G0175900 Salix brachista HOM05D004908 ORTHO05D006418 4.4e-88 328.9 339 56.0
BcaB07g31879 Brassica carinata HOM05D004908 ORTHO05D006418 7.5e-88 328.2 272 60.7
Carub.0001s1823 Capsella rubella HOM05D004908 ORTHO05D006418 1.3e-87 327.4 285 60.4
BolC5t30387H Brassica oleracea HOM05D004908 ORTHO05D006418 4.9e-87 325.5 278 60.1
Thhalv10008142m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 6.4e-87 325.1 285 60.4
AL1G31040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 8.3e-87 324.7 285 59.3
BcaC05g25755 Brassica carinata HOM05D004908 ORTHO05D006418 1.1e-86 324.3 265 61.5
C05p16860 Brassica napus HOM05D004908 ORTHO05D006418 1.1e-86 324.3 265 61.5
AT1G18600 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 4.1e-86 322.4 285 58.6
Hund02570 Selenicereus undatus HOM05D004908 ORTHO05D006418 7.0e-86 321.6 340 53.5
CARHR019220 Cardamine hirsuta HOM05D004908 ORTHO05D006418 9.2e-86 321.2 285 59.3
Duzib068G0428 Durio zibethinus HOM05D004908 ORTHO05D006418 9.2e-86 321.2 348 54.3
Eucgr.B00624 Eucalyptus grandis HOM05D004908 ORTHO05D006418 2.1e-85 320.1 348 53.2
MBI16_g10851_MAGBIO Magnolia biondii HOM05D004908 ORTHO05D006418 2.1e-85 320.1 336 50.6
Sopen12g018880 Solanum pennellii HOM05D004908 ORTHO05D006418 2.7e-85 319.7 341 54.3
Sp1g16570 Schrenkiella parvula HOM05D004908 ORTHO05D006418 1.0e-84 317.8 278 57.6
Sed0013495 Sechium edule HOM05D004908 ORTHO05D006418 1.0e-84 317.8 336 53.0
CsaV3_1G006120 Cucumis sativus L. HOM05D004908 ORTHO05D006418 3.0e-84 316.2 339 51.9
Prupe.5G207200 Prunus persica HOM05D004908 ORTHO05D006418 5.6e-83 312.0 342 51.8
Aa31LG7G3360 Aethionema arabicum HOM05D004908 ORTHO05D006418 7.3e-83 311.6 284 58.1
Lsat_1_v5_gn_5_22901 Lactuca sativa HOM05D004908 ORTHO05D006418 4.7e-82 308.9 340 51.8
Glyma.05G019500 Glycine max HOM05D004908 ORTHO05D006418 4.4e-80 302.4 281 57.7
MSTRG.9592 Avicennia marina HOM05D004908 ORTHO05D006418 2.2e-79 300.1 339 50.1
Oeu032097.2 Olea europaea HOM05D004908 ORTHO05D006418 3.7e-79 299.3 365 49.9
SGA_v2.0_scaffold51G18774 Striga asiatica HOM05D004908 ORTHO05D006418 1.4e-78 297.4 358 49.2
ClCG04G011680 Citrullus lanatus HOM05D004908 ORTHO05D006418 1.9e-78 297.0 279 56.6
Lj9C439G11 Lonicera japonica HOM05D004908 ORTHO05D006418 3.2e-78 296.2 205 69.3
Migut.D01626 Erythranthe guttata HOM05D004908 ORTHO05D006418 1.2e-77 294.3 235 64.7
Peaxi162Scf01223g00009 Petunia axillaris HOM05D004908 ORTHO05D006418 1.2e-77 294.3 345 50.1
HanXRQChr05g0153521 Helianthus annuus HOM05D004908 ORTHO05D006418 1.6e-77 293.9 263 58.6
THA.LOC104808039 Tarenaya hassleriana HOM05D004908 ORTHO05D006418 1.6e-77 293.9 249 61.4
Manes.14G087101 Manihot esculenta HOM05D004908 ORTHO05D006418 7.8e-77 291.6 351 50.4
Nitab4.5_0001797g0080 Nicotiana tabacum HOM05D004908 ORTHO05D006418 1.3e-76 290.8 360 49.2
Phvul.003G183300 Phaseolus vulgaris HOM05D004908 ORTHO05D006418 3.0e-76 289.7 272 56.2
TPR.G1983 Trifolium pratense HOM05D004908 ORTHO05D006418 3.3e-75 286.2 259 57.1
AUR62039652 Chenopodium quinoa HOM05D004908 ORTHO05D006418 1.2e-74 284.3 343 47.8
Medtr4g109700 Medicago truncatula HOM05D004908 ORTHO05D006418 2.8e-74 283.1 309 50.8
Ah.11g047620 Amaranthus hybridus HOM05D004908 ORTHO05D006418 8.1e-74 281.6 328 47.9
Lalb_Chr07g0178341 Lupinus albus HOM05D004908 ORTHO05D006418 1.4e-73 280.8 291 52.2
VMungo1215G2693 Vigna mungo HOM05D004908 ORTHO05D006418 2.4e-73 280.0 285 51.6
ECA246G3883 Erigeron canadensis HOM05D004908 ORTHO05D006418 5.2e-73 278.9 211 65.4
PSO478G4625 Papaver somniferum HOM05D004908 ORTHO05D006418 1.2e-72 277.7 260 57.3
Duzib205G0531 Durio zibethinus HOM05D004908 ORTHO05D006418 2.0e-72 276.9 329 47.1
arahy.Tifrunner.gnm1.ann1.J6BFMQ Arachis hypogaea HOM05D004908 ORTHO05D006418 7.6e-72 275.0 257 57.6
arahy.Tifrunner.gnm1.ann1.PAN20U Arachis hypogaea HOM05D004908 ORTHO05D006418 7.6e-72 275.0 257 57.6
AUR62021531 Chenopodium quinoa HOM05D004908 ORTHO05D006418 9.9e-72 274.6 355 46.2
MELO3C002041.2 Cucumis melo HOM05D004908 ORTHO05D006418 2.9e-71 273.1 314 50.3
CDE07G0469 Ceratophyllum demersum HOM05D004908 ORTHO05D006418 1.9e-70 270.4 319 44.8
Lj4g0028183 Lotus japonicus HOM05D004908 ORTHO05D006418 1.2e-69 267.7 258 53.5
FAN08G1663 Fragaria x ananassa HOM05D004908 ORTHO05D006418 3.9e-68 262.7 342 46.8
unitig_699.g19027 Utricularia gibba HOM05D004908 ORTHO05D006418 1.1e-67 261.2 266 52.3
FAN13G1921 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.9e-67 260.4 344 45.9
EL10Ac5g11159 Beta vulgaris HOM05D004908 ORTHO05D006418 4.3e-67 259.2 210 61.0
PSO017G6704 Papaver somniferum HOM05D004908 ORTHO05D006418 2.1e-66 256.9 339 48.7
PSO017G5063 Papaver somniferum HOM05D004908 ORTHO05D006418 2.8e-66 256.5 339 48.7
FAN08G0411 Fragaria x ananassa HOM05D004908 ORTHO05D006418 5.8e-64 248.8 339 46.6
DCAR_011562 Daucus carota HOM05D004908 ORTHO05D006418 1.7e-63 247.3 260 53.5
Os01g0763100 Oryza sativa ssp. japonica HOM05D004908 ORTHO05D006418 1.7e-63 247.3 208 59.6
Nitab4.5_0006506g0020 Nicotiana tabacum HOM05D004908 ORTHO05D006418 2.9e-63 246.5 207 61.4
SHI17490 Sapria himalayana HOM05D004908 ORTHO05D006418 2.9e-63 246.5 208 60.6
FAN13G3071 Fragaria x ananassa HOM05D004908 ORTHO05D006418 2.1e-61 240.4 271 50.2
FAN18G1888 Fragaria x ananassa HOM05D004908 ORTHO05D006418 3.3e-59 233.0 342 43.6
SalBow7G1843 Salvia bowleyana HOM05D004908 ORTHO05D006418 2.8e-58 229.9 250 49.6
Sc04g0004310 Simmondsia chinensis HOM05D004908 ORTHO05D006418 1.8e-57 227.3 342 43.0
vmacro17622 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 1.3e-55 221.1 205 57.6
PGR083G2541 Punica granatum HOM05D004908 ORTHO05D006418 4.9e-55 219.2 274 46.0
HPP92_019201 Vanilla planifolia HOM05D004908 ORTHO05D006418 1.2e-53 214.5 202 53.0
PSO017G2617 Papaver somniferum HOM05D004908 ORTHO05D006418 1.6e-53 214.2 214 52.8
ATR0827G189 Amborella trichopoda HOM05D004908 ORTHO05D006418 4.6e-53 212.6 196 56.1
AL2G34040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 6.7e-52 208.8 294 43.9
FAN13G1644 Fragaria x ananassa HOM05D004908 ORTHO05D006418 7.4e-51 205.3 198 55.6
Zm00001eb370410 Zea mays HOM05D004908 ORTHO05D006418 1.6e-50 204.1 200 54.5
CARHR067290 Cardamine hirsuta HOM05D004908 ORTHO05D006418 1.1e-49 201.4 274 44.2
Psat0s3566g0040 Pisum sativum HOM05D004908 ORTHO05D006418 2.6e-48 196.8 208 51.4
AT1G74130 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 1.3e-47 194.5 267 42.7
Prupe.3G124800 Prunus persica HOM05D004908 ORTHO05D006418 6.5e-47 192.2 355 40.8
Gohir.D10G255500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.1e-46 191.4 126 74.6
Carub.0002s2094 Capsella rubella HOM05D004908 ORTHO05D006418 4.6e-45 186.0 275 42.5
BraA07t31547Z Brassica rapa HOM05D003320 ORTHO05D003941 7.9e-45 185.3 250 43.6
Carub.0002s2095 Capsella rubella HOM05D004908 ORTHO05D006418 4.3e-43 179.5 239 45.2
SalBow7G4422 Salvia bowleyana HOM05D004908 ORTHO05D006418 9.6e-43 178.3 258 42.6
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 1.6e-42 177.6 311 38.6
Thhalv10019561m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 2.1e-42 177.2 289 41.2
Mapoly0086s0048 Marchantia polymorpha HOM05D004908 ORTHO05D006418 4.8e-42 176.0 200 49.5
BcaC08g46817 Brassica carinata HOM05D004908 ORTHO05D006418 8.2e-42 175.3 292 39.0
Pp3c22_7870 Physcomitrium patens HOM05D004908 ORTHO05D006418 1.1e-41 174.9 203 47.3
RcHm_v2.0_Chr1g0346931 Rosa chinensis HOM05D004908 ORTHO05D006418 1.1e-41 174.9 123 73.2
AagrBONN_evm.TU.Sc2ySwM_368.1628 Anthoceros agrestis HOM05D004908 ORTHO05D006418 1.8e-41 174.1 191 47.1
FvH4_5g13620 Fragaria vesca HOM05D004908 ORTHO05D006418 2.4e-41 173.7 159 57.9
SalBow7G0217 Salvia bowleyana HOM05D004908 ORTHO05D006418 3.1e-41 173.3 229 45.9
Solyc12g038590.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 8.4e-39 165.2 221 48.0
BolC6t39860H Brassica oleracea HOM05D004908 ORTHO05D006418 1.1e-38 164.9 232 41.8
Actinidia04812 Actinidia chinensis HOM05D004908 ORTHO05D006418 2.5e-38 163.7 216 45.8
Solyc12g038600.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 7.1e-38 162.2 129 62.8
SEGI_05482 Sequoiadendron giganteum HOM05D004908 ORTHO05D006418 1.8e-36 157.5 159 56.6
C06p48280 Brassica napus HOM05D004908 ORTHO05D006418 6.7e-36 155.6 198 43.9
AT1G74140 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 3.3e-35 153.3 269 39.8
BcaC08g46813 Brassica carinata HOM05D004908 ORTHO05D006418 3.3e-35 153.3 230 40.0
Glyma.17G080300 Glycine max HOM05D004908 ORTHO05D006418 7.4e-35 152.1 164 51.8
RcHm_v2.0_Chr6g0258631 Rosa chinensis HOM05D004908 ORTHO05D006418 1.6e-34 151.0 121 66.9
C06p48290 Brassica napus HOM05D003320 ORTHO05D003941 2.2e-34 150.6 221 41.2
MCO07G692 Micromonas commoda HOM05D004908 ORTHO05D006418 6.3e-34 149.1 235 34.5
BcaC08g46846 Brassica carinata HOM05D003320 ORTHO05D003941 1.8e-33 147.5 299 37.5
RcHm_v2.0_Chr7g0183341 Rosa chinensis HOM05D004908 ORTHO05D006418 4.5e-32 142.9 118 59.3
SalBow7G4769 Salvia bowleyana HOM05D004908 ORTHO05D006418 7.7e-32 142.1 219 42.5
Actinidia13428 Actinidia chinensis HOM05D004908 ORTHO05D006418 1.1e-27 128.3 101 63.4
HPP92_019191 Vanilla planifolia HOM05D004908 ORTHO05D006418 3.3e-27 126.7 103 56.3
vmacro17623 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 5.7e-27 125.9 88 71.6
Gohir.A06G087200 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.1e-25 121.7 73 74.0
RcHm_v2.0_Chr6g0258651 Rosa chinensis HOM05D004908 ORTHO05D006418 1.9e-22 110.9 74 73.0
RcHm_v2.0_Chr1g0346941 Rosa chinensis HOM05D004908 ORTHO05D006418 1.2e-21 108.2 71 70.4
CBR_g24070 Chara braunii HOM05D000019 ORTHO05D000002 2.8e-18 97.1 104 42.3
BolC6t39863H Brassica oleracea HOM05D004908 ORTHO05D039080 1.3e-15 88.2 168 37.5
FvH4_5g13610 Fragaria vesca HOM05D004908 ORTHO05D006418 5.0e-15 86.3 73 61.6
Dinv17434 Davidia involucrata HOM05D004908 ORTHO05D006418 1.1e-14 85.1 83 56.6
BcaC08g46819 Brassica carinata HOM05D004908 ORTHO05D039080 1.8e-12 77.8 69 52.2
Gohir.A07G149500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.1e-09 68.6 42 71.4
PRCOL_00000970 Prasinoderma coloniale HOM05D049057 ORTHO05D049180 2.5e-06 57.4 136 32.4
RcHm_v2.0_Chr6g0263661 Rosa chinensis HOM05D004908 ORTHO05D006418 4.2e-06 56.6 40 65.0


User provided reference genes

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