Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G0696 Trochodendron aralioides HOM05D004795 ORTHO05D005518 2.0e-96 355.9 202 100.0
TAR629G1480 Trochodendron aralioides HOM05D004795 ORTHO05D005518 6.8e-68 261.2 202 74.8
TAR622G0902 Trochodendron aralioides HOM05D004795 ORTHO05D005518 7.3e-54 214.5 203 63.5
Nn3g17899 Nelumbo nucifera HOM05D004795 ORTHO05D005518 3.2e-49 199.1 207 61.8
Cfa007915 Carpinus fangiana HOM05D004795 ORTHO05D005518 1.1e-46 190.7 204 58.3
QL02p051034 Quercus lobata HOM05D004795 ORTHO05D005518 1.6e-45 186.8 205 56.1
QL12p016552 Quercus lobata HOM05D004795 ORTHO05D005518 1.6e-45 186.8 205 56.1
CiPaw.03G062800 Carya illinoinensis HOM05D004795 ORTHO05D005518 2.8e-45 186.0 206 55.8
Haze_14167 Corylus avellana HOM05D004795 ORTHO05D005518 3.8e-42 175.6 204 55.9
TWI77G0518 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 3.8e-42 175.6 207 53.6
CiPaw.04G043000 Carya illinoinensis HOM05D004795 ORTHO05D005518 1.9e-41 173.3 206 55.3
TWI53G1522 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 3.5e-40 169.1 204 52.9
MD09G1253700 Malus domestica HOM05D004795 ORTHO05D005518 7.8e-40 167.9 208 53.4
MD17G1245500 Malus domestica HOM05D004795 ORTHO05D005518 6.6e-39 164.9 208 51.4
COL.COLO4_09348 Corchorus olitorius HOM05D004795 ORTHO05D005518 8.1e-37 157.9 207 52.7
CANSAT78G0274 Cannabis sativa HOM05D004795 ORTHO05D005518 2.4e-36 156.4 211 52.1
Thecc.04G132300 Theobroma cacao HOM05D004795 ORTHO05D005518 3.1e-36 156.0 206 52.4
Duzib138G0938 Durio zibethinus HOM05D004795 ORTHO05D005518 9.0e-36 154.5 207 53.1
Eucgr.J01506 Eucalyptus grandis HOM05D004795 ORTHO05D005518 9.0e-36 154.5 183 51.4
Manes.02G069600 Manihot esculenta HOM05D004795 ORTHO05D005518 3.4e-35 152.5 192 53.6
Sabra17G0096100 Salix brachista HOM05D004795 ORTHO05D005518 3.4e-35 152.5 230 46.1
Prupe.3G143600 Prunus persica HOM05D004795 ORTHO05D005518 9.9e-35 151.0 208 51.4
arahy.Tifrunner.gnm1.ann1.HZ9SBP Arachis hypogaea HOM05D001490 ORTHO05D005518 1.7e-34 150.2 230 47.8
Nitab4.5_0000912g0060 Nicotiana tabacum HOM05D004795 ORTHO05D005518 2.2e-34 149.8 201 49.3
Duzib211G0180 Durio zibethinus HOM05D004795 ORTHO05D005518 2.9e-34 149.4 204 51.0
CAN.G625.30 Capsicum annuum HOM05D004795 ORTHO05D005518 4.9e-34 148.7 201 49.8
Potri.017G116100 Populus trichocarpa HOM05D004795 ORTHO05D005518 8.4e-34 147.9 230 45.7
Sopen02g030830 Solanum pennellii HOM05D004795 ORTHO05D005518 1.1e-33 147.5 200 50.0
Glyma.13G045200 Glycine max HOM05D004795 ORTHO05D005518 1.9e-33 146.7 209 51.2
Rhsim10G0068600 Rhododendron simsii HOM05D004795 ORTHO05D005518 4.2e-33 145.6 208 48.1
PGR004G2449 Punica granatum HOM05D004795 ORTHO05D005518 5.4e-33 145.2 206 48.5
PGSC0003DMG402026390 Solanum tuberosum HOM05D004795 ORTHO05D005518 5.4e-33 145.2 200 50.0
Duzib133G0847 Durio zibethinus HOM05D004795 ORTHO05D005518 7.1e-33 144.8 194 52.6
Dinv33956 Davidia involucrata HOM05D001490 ORTHO05D001450 9.3e-33 144.4 163 59.5
ClCG05G012330 Citrullus lanatus HOM05D004795 ORTHO05D005518 1.2e-32 144.1 196 46.9
Sabra04G0081300 Salix brachista HOM05D004795 ORTHO05D005518 1.2e-32 144.1 206 47.6
Cpa.g.sc170.57 Carica papaya HOM05D004795 ORTHO05D005518 7.8e-32 141.4 222 48.2
Cc07_g08730 Coffea canephora HOM05D004795 ORTHO05D005518 3.9e-31 139.0 202 49.0
CsaV3_3G020240 Cucumis sativus L. HOM05D004795 ORTHO05D005518 6.6e-31 138.3 185 48.1
DCAR_025909 Daucus carota HOM05D004795 ORTHO05D005518 8.7e-31 137.9 189 49.7
Gohir.D11G325800 Gossypium hirsutum HOM05D004795 ORTHO05D005518 8.7e-31 137.9 210 48.6
Gohir.D11G325700 Gossypium hirsutum HOM05D004795 ORTHO05D005518 5.6e-30 135.2 210 47.6
VMungo1383G1737 Vigna mungo HOM05D004795 ORTHO05D005518 5.6e-30 135.2 168 56.5
FAN02G3195 Fragaria x ananassa HOM05D004795 ORTHO05D005518 2.8e-29 132.9 195 52.8
FAN05G2248 Fragaria x ananassa HOM05D004795 ORTHO05D005518 2.8e-29 132.9 198 52.5
Glyma.19G049900 Glycine max HOM05D004795 ORTHO05D005518 2.8e-29 132.9 211 52.6
VMungo0464G1679 Vigna mungo HOM05D004795 ORTHO05D005518 3.6e-29 132.5 207 50.7
Manes.01G111300 Manihot esculenta HOM05D004795 ORTHO05D005518 4.8e-29 132.1 192 47.4
RcHm_v2.0_Chr2g0148201 Rosa chinensis HOM05D004795 ORTHO05D005518 6.2e-29 131.7 204 50.5
FAN14G2363 Fragaria x ananassa HOM05D004795 ORTHO05D005518 8.1e-29 131.3 202 51.5
FAN14G5069 Fragaria x ananassa HOM05D004795 ORTHO05D005518 8.1e-29 131.3 202 51.5
FvH4_6g36230 Fragaria vesca HOM05D004795 ORTHO05D005518 1.1e-28 131.0 194 52.1
Phvul.008G007200 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 1.4e-28 130.6 166 54.8
MELO3C023735.2 Cucumis melo HOM05D004795 ORTHO05D005518 1.8e-28 130.2 187 46.0
MSTRG.3555 Avicennia marina HOM05D004795 ORTHO05D005518 6.9e-28 128.3 212 43.4
Atru.chr1.1662 Acer truncatum HOM05D004795 ORTHO05D005518 9.0e-28 127.9 192 47.4
Phvul.004G066100 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 1.5e-27 127.1 202 51.0
Gohir.D11G326300 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.0e-27 126.7 210 46.7
Glyma.08G366700 Glycine max HOM05D004795 ORTHO05D005518 4.5e-27 125.6 156 52.6
Ciclev10012794m.g Citrus clementina HOM05D004795 ORTHO05D005518 7.6e-27 124.8 207 48.3
Hma1.2p1_1109F.1_g258120 Hydrangea macrophylla HOM05D004795 ORTHO05D005518 1.7e-26 123.6 203 51.2
Oeu016627.1 Olea europaea HOM05D004795 ORTHO05D005518 1.7e-26 123.6 207 44.4
Oeu050378.1 Olea europaea HOM05D004795 ORTHO05D005518 1.7e-26 123.6 206 43.2
Sed0015257 Sechium edule HOM05D004795 ORTHO05D005518 1.7e-26 123.6 185 44.9
Peaxi162Scf00394g00712 Petunia axillaris HOM05D004795 ORTHO05D005518 2.2e-26 123.2 153 51.6
Aqoxy3G00247 Aquilegia oxysepala HOM05D004795 ORTHO05D005518 1.4e-25 120.6 220 42.7
FAN09G4185 Fragaria x ananassa HOM05D004795 ORTHO05D005518 4.2e-25 119.0 196 50.0
Lj2g0010000 Lotus japonicus HOM05D004795 ORTHO05D005518 1.3e-23 114.0 222 45.5
Oeu039734.1 Olea europaea HOM05D004795 ORTHO05D005518 1.3e-23 114.0 188 42.6
Migut.L00330 Erythranthe guttata HOM05D004795 ORTHO05D005518 1.8e-23 113.6 215 43.3
Glyma.18G295700 Glycine max HOM05D004795 ORTHO05D005518 3.9e-23 112.5 170 51.2
Lsat_1_v5_gn_4_154580 Lactuca sativa HOM05D004795 ORTHO05D005518 3.9e-23 112.5 195 42.6
Gorai.008G056400 Gossypium raimondii HOM05D004795 ORTHO05D005518 5.1e-23 112.1 169 46.7
Gohir.D12G053200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 6.7e-23 111.7 169 47.3
Nitab4.5_0004416g0090 Nicotiana tabacum HOM05D004795 ORTHO05D005518 3.3e-22 109.4 161 47.2
Lj1g0003158 Lotus japonicus HOM05D004795 ORTHO05D005518 4.3e-22 109.0 180 48.3
Gohir.A12G054400 Gossypium hirsutum HOM05D004795 ORTHO05D005518 7.4e-22 108.2 187 44.9
PGR042G3836 Punica granatum HOM05D004795 ORTHO05D005518 2.1e-21 106.7 207 43.0
Aa31LG9G17140 Aethionema arabicum HOM05D004795 ORTHO05D005518 3.7e-21 105.9 221 40.7
C02p22330 Brassica napus HOM05D004795 ORTHO05D005518 4.8e-21 105.5 214 37.4
Ah.16g101690 Amaranthus hybridus HOM05D004795 ORTHO05D005518 6.2e-21 105.1 202 43.1
BolC2t08386H Brassica oleracea HOM05D004795 ORTHO05D005518 8.1e-21 104.8 214 38.3
Lalb_Chr10g0091311 Lupinus albus HOM05D004795 ORTHO05D005518 1.4e-20 104.0 166 44.6
BraA02t06447Z Brassica rapa HOM05D004795 ORTHO05D005518 1.8e-20 103.6 211 38.9
MBI09_g36997_MAGBIO Magnolia biondii HOM05D004795 ORTHO05D005518 2.4e-20 103.2 208 46.6
Gohir.A11G163900 Gossypium hirsutum HOM05D004795 ORTHO05D005518 3.1e-20 102.8 206 40.8
Gorai.007G182000 Gossypium raimondii HOM05D004795 ORTHO05D005518 9.0e-20 101.3 206 40.3
Gorai.007G356700 Gossypium raimondii HOM05D004795 ORTHO05D005518 9.0e-20 101.3 172 44.8
HanXRQChr11g0330661 Helianthus annuus HOM05D004795 ORTHO05D005518 2.0e-19 100.1 156 46.8
Ca_08078_v3 Cicer arietinum L. HOM05D004795 ORTHO05D005518 2.6e-19 99.8 165 43.6
Sc11g0008370 Simmondsia chinensis HOM05D004795 ORTHO05D005518 2.6e-19 99.8 197 44.2
Potri.004G098200 Populus trichocarpa HOM05D004795 ORTHO05D005518 3.4e-19 99.4 131 48.1
THA.LOC104805574 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 4.5e-19 99.0 221 38.5
BcaC03g14785 Brassica carinata HOM05D004795 ORTHO05D005518 2.2e-18 96.7 218 37.2
Thhalv10027906m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 1.4e-17 94.0 214 40.7
BraA07t31003Z Brassica rapa HOM05D004795 ORTHO05D005518 7.1e-17 91.7 207 38.2
Sp5g21970 Schrenkiella parvula HOM05D004795 ORTHO05D005518 9.3e-17 91.3 221 35.7
THA.LOC104822635 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 9.3e-17 91.3 220 40.9
BcaB05g24226 Brassica carinata HOM05D004795 ORTHO05D005518 1.2e-16 90.9 211 37.4
HanXRQChr11g0325401 Helianthus annuus HOM05D004795 ORTHO05D005518 2.1e-16 90.1 175 40.6
A07p33770 Brassica napus HOM05D004795 ORTHO05D005518 2.7e-16 89.7 202 34.2
Thhalv10019032m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 2.7e-16 89.7 225 33.3
BcaB06g27183 Brassica carinata HOM05D004795 ORTHO05D005518 3.5e-16 89.4 212 38.7
Lalb_Chr02g0158191 Lupinus albus HOM05D004795 ORTHO05D005518 3.5e-16 89.4 165 41.8
TPR.G31528 Trifolium pratense HOM05D004795 ORTHO05D005518 3.5e-16 89.4 178 43.8
AT1G67035 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 7.9e-16 88.2 203 41.4
Psat3g098240 Pisum sativum HOM05D004795 ORTHO05D005518 7.9e-16 88.2 172 44.8
Medtr7g082230 Medicago truncatula HOM05D004795 ORTHO05D005518 1.0e-15 87.8 171 43.9
Carub.0002s1332 Capsella rubella HOM05D004795 ORTHO05D005518 1.3e-15 87.4 199 41.2
A04p11270 Brassica napus HOM05D004795 ORTHO05D005518 1.8e-15 87.0 215 37.2
BraA04t16787Z Brassica rapa HOM05D004795 ORTHO05D005518 1.8e-15 87.0 215 37.2
CARHR214290 Cardamine hirsuta HOM05D004795 ORTHO05D005518 1.8e-15 87.0 216 38.4
AT5G38300 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 2.3e-15 86.7 231 37.7
BolC4t26077H Brassica oleracea HOM05D004795 ORTHO05D005518 2.3e-15 86.7 215 37.2
BcaC02g09641 Brassica carinata HOM05D004795 ORTHO05D005518 3.0e-15 86.3 214 37.4
SGA_v2.0_scaffold115G32104 Striga asiatica HOM05D004795 ORTHO05D005518 3.0e-15 86.3 189 37.6
Aa31LG2G3430 Aethionema arabicum HOM05D004795 ORTHO05D005518 3.9e-15 85.9 218 35.3
Actinidia15890 Actinidia chinensis HOM05D004795 ORTHO05D005518 6.7e-15 85.1 164 39.6
BolC6t39123H Brassica oleracea HOM05D004795 ORTHO05D005518 1.5e-14 84.0 203 36.0
Sp7g03720 Schrenkiella parvula HOM05D004795 ORTHO05D005518 1.5e-14 84.0 217 37.8
Gohir.D11G170200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 4.3e-14 82.4 151 41.1
C04p44990 Brassica napus HOM05D004795 ORTHO05D005518 5.7e-14 82.0 219 37.0
AL2G25370 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 9.6e-14 81.3 194 36.1
CARHR059450 Cardamine hirsuta HOM05D004795 ORTHO05D005518 2.1e-13 80.1 190 36.8
Carub.0005s1274 Capsella rubella HOM05D004795 ORTHO05D005518 2.8e-13 79.7 217 36.4
ECA232G0641 Erigeron canadensis HOM05D000072 ORTHO05D000026 2.8e-13 79.7 110 49.1
Solyc02g086140.2 Solanum lycopersicum HOM05D004795 ORTHO05D005518 2.8e-13 79.7 114 48.2
C06p43160 Brassica napus HOM05D004795 ORTHO05D005518 3.7e-13 79.3 207 32.9
unitig_32.g11886 Utricularia gibba HOM05D004795 ORTHO05D005518 3.7e-13 79.3 191 38.2
BcaNung06250 Brassica carinata HOM05D004795 ORTHO05D005518 1.1e-12 77.8 210 36.2
ATR0752G028 Amborella trichopoda HOM05D004795 ORTHO05D005518 1.8e-12 77.0 165 38.8
Gorai.001G202200 Gossypium raimondii HOM05D004795 ORTHO05D005518 2.4e-12 76.6 157 42.7
Ah.06g188560 Amaranthus hybridus HOM05D004795 ORTHO05D005518 3.1e-12 76.3 157 40.1
AUR62023290 Chenopodium quinoa HOM05D004795 ORTHO05D005518 4.1e-12 75.9 100 53.0
Psat1g081000 Pisum sativum HOM05D004795 ORTHO05D005518 4.1e-12 75.9 252 35.7
TPR.G32442 Trifolium pratense HOM05D004795 ORTHO05D005518 4.1e-12 75.9 308 32.8
Medtr6g018780 Medicago truncatula HOM05D004795 ORTHO05D005518 5.3e-12 75.5 101 46.5
AL7G52500 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 1.2e-11 74.3 232 34.1
PSO532G0010 Papaver somniferum HOM05D004795 ORTHO05D005518 2.0e-11 73.6 149 40.3
PSO541G1476 Papaver somniferum HOM05D004795 ORTHO05D005518 2.0e-11 73.6 160 39.4
Gohir.D11G325975 Gossypium hirsutum HOM05D004795 ORTHO05D005518 5.8e-11 72.0 101 46.5
AUR62043981 Chenopodium quinoa HOM05D004795 ORTHO05D005518 1.0e-10 71.2 258 31.4
AUR62009011 Chenopodium quinoa HOM05D004795 ORTHO05D005518 3.8e-10 69.3 106 48.1
PSO541G4271 Papaver somniferum HOM05D004795 ORTHO05D005518 1.4e-09 67.4 157 36.3
Thecc.07G096700 Theobroma cacao HOM05D004795 ORTHO05D002259 9.3e-09 64.7 105 45.7
unitig_748.g8746 Utricularia gibba HOM05D004795 ORTHO05D005518 1.5e-06 57.4 126 36.5
SalBow5G0757 Salvia bowleyana HOM05D004795 ORTHO05D005518 4.3e-06 55.8 84 39.3


User provided reference genes

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