Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G0666 Trochodendron aralioides HOM05D004646 ORTHO05D005829 2.0e-155 552.4 280 100.0
Nn3g17224 Nelumbo nucifera HOM05D004646 ORTHO05D005829 8.8e-90 334.3 264 67.0
Dinv16641 Davidia involucrata HOM05D004646 ORTHO05D005829 2.1e-83 313.2 264 59.5
CSS0046070 Camellia sinensis var. sinensis HOM05D004646 ORTHO05D005829 6.1e-75 285.0 264 58.3
Hma1.2p1_0795F.1_g218775 Hydrangea macrophylla HOM05D004646 ORTHO05D005829 3.0e-74 282.7 265 58.5
PSO063G0788 Papaver somniferum HOM05D004646 ORTHO05D005829 3.3e-73 279.3 266 57.5
PSO832G2587 Papaver somniferum HOM05D004646 ORTHO05D005829 4.4e-73 278.9 266 57.1
Actinidia31896 Actinidia chinensis HOM05D004646 ORTHO05D005829 3.7e-72 275.8 268 56.7
CiPaw.05G135800 Carya illinoinensis HOM05D004646 ORTHO05D005829 1.8e-71 273.5 212 64.2
Manes.05G100900 Manihot esculenta HOM05D004646 ORTHO05D005829 5.3e-71 271.9 268 54.5
GSVIVG01019995001 Vitis vinifera HOM05D004646 ORTHO05D005829 2.0e-70 270.0 268 58.2
Thecc.02G347000 Theobroma cacao HOM05D004646 ORTHO05D005829 1.5e-68 263.8 222 60.4
Cfa008987 Carpinus fangiana HOM05D004646 ORTHO05D005829 2.5e-68 263.1 269 53.5
Ciclev10032082m.g Citrus clementina HOM05D004646 ORTHO05D005829 1.2e-67 260.8 221 61.5
Aqoxy3G03371 Aquilegia oxysepala HOM05D004646 ORTHO05D005829 6.1e-67 258.5 266 54.1
COL.COLO4_23008 Corchorus olitorius HOM05D004646 ORTHO05D005829 2.0e-65 253.4 268 49.3
Haze_12017 Corylus avellana HOM05D004646 ORTHO05D005829 2.0e-65 253.4 284 50.7
Sc14g0008260 Simmondsia chinensis HOM05D004646 ORTHO05D005829 3.4e-65 252.7 270 52.2
CANSAT64G1881 Cannabis sativa HOM05D004646 ORTHO05D005829 4.4e-65 252.3 256 52.0
Prupe.1G273600 Prunus persica HOM05D004646 ORTHO05D005829 1.3e-64 250.8 268 51.1
Gohir.A04G147800 Gossypium hirsutum HOM05D004646 ORTHO05D005829 2.2e-64 250.0 261 52.1
ClCG05G024330 Citrullus lanatus HOM05D004646 ORTHO05D005829 2.8e-64 249.6 267 50.6
MD13G1072600 Malus domestica HOM05D004646 ORTHO05D005829 2.8e-64 249.6 268 51.1
MD16G1073400 Malus domestica HOM05D004646 ORTHO05D005829 1.4e-63 247.3 270 50.7
Lalb_Chr09g0329301 Lupinus albus HOM05D004646 ORTHO05D005829 1.8e-63 246.9 264 49.6
Cc11_g13050 Coffea canephora HOM05D004646 ORTHO05D005829 2.4e-63 246.5 194 63.4
Duzib251G0705 Durio zibethinus HOM05D004646 ORTHO05D005829 2.4e-63 246.5 269 50.2
Lj4g0000065 Lotus japonicus HOM05D004646 ORTHO05D005829 2.4e-63 246.5 263 50.2
MELO3C012090.2 Cucumis melo HOM05D004646 ORTHO05D005829 3.1e-63 246.1 267 50.2
Potri.008G147600 Populus trichocarpa HOM05D004646 ORTHO05D005829 3.1e-63 246.1 262 53.8
PGR102G1495 Punica granatum HOM05D004646 ORTHO05D005829 3.1e-63 246.1 267 50.6
QL03p064307 Quercus lobata HOM05D004646 ORTHO05D005829 3.1e-63 246.1 200 61.0
MSTRG.7804 Avicennia marina HOM05D004646 ORTHO05D005829 4.1e-63 245.7 271 49.8
Gorai.012G187500 Gossypium raimondii HOM05D004646 ORTHO05D005829 5.4e-63 245.4 198 61.6
Eucgr.B03438 Eucalyptus grandis HOM05D004646 ORTHO05D005829 7.0e-63 245.0 264 51.5
CsaV3_5G032630 Cucumis sativus L. HOM05D004646 ORTHO05D005829 9.1e-63 244.6 267 49.4
Oeu055120.1 Olea europaea HOM05D004646 ORTHO05D005829 1.6e-62 243.8 264 51.9
QL03p063033 Quercus lobata HOM05D004646 ORTHO05D005829 1.6e-62 243.8 200 60.5
SalBow2G3250 Salvia bowleyana HOM05D004646 ORTHO05D005829 2.0e-62 243.4 209 57.9
Lsat_1_v5_gn_8_53300 Lactuca sativa HOM05D004646 ORTHO05D005829 2.7e-62 243.0 247 54.7
Lalb_Chr05g0220381 Lupinus albus HOM05D004646 ORTHO05D005829 3.5e-62 242.7 271 49.8
Medtr8g467540 Medicago truncatula HOM05D004646 ORTHO05D005829 4.5e-62 242.3 234 52.1
TPR.G31818 Trifolium pratense HOM05D004646 ORTHO05D005829 5.9e-62 241.9 266 48.9
Atru.chr11.1794 Acer truncatum HOM05D004646 ORTHO05D005829 1.0e-61 241.1 252 52.4
Psat4g134400 Pisum sativum HOM05D004646 ORTHO05D005829 1.0e-61 241.1 232 52.6
FAN12G2979 Fragaria x ananassa HOM05D004646 ORTHO05D005829 1.7e-61 240.4 268 50.0
ATR0564G518 Amborella trichopoda HOM05D004646 ORTHO05D005829 2.9e-61 239.6 272 50.7
FAN07G2721 Fragaria x ananassa HOM05D004646 ORTHO05D005829 2.9e-61 239.6 268 50.4
FAN17G1826 Fragaria x ananassa HOM05D004646 ORTHO05D005829 2.9e-61 239.6 268 50.7
Gohir.D04G192100 Gossypium hirsutum HOM05D004646 ORTHO05D005829 2.9e-61 239.6 243 54.3
HanXRQChr12g0362151 Helianthus annuus HOM05D004646 ORTHO05D005829 2.9e-61 239.6 263 50.2
Phvul.L004046 Phaseolus vulgaris HOM05D004646 ORTHO05D005829 3.8e-61 239.2 242 51.2
VMungo1127G0944 Vigna mungo HOM05D004646 ORTHO05D005829 6.5e-61 238.4 242 51.2
AUR62005771 Chenopodium quinoa HOM05D004646 ORTHO05D005829 8.5e-61 238.0 192 59.4
FvH4_4g31430 Fragaria vesca HOM05D004646 ORTHO05D005829 8.5e-61 238.0 268 50.0
RcHm_v2.0_Chr4g0439911 Rosa chinensis HOM05D004646 ORTHO05D005829 8.5e-61 238.0 268 50.4
Phvul.011G179800 Phaseolus vulgaris HOM05D004646 ORTHO05D005829 1.9e-60 236.9 272 48.9
EL10Ac6g13196 Beta vulgaris HOM05D004646 ORTHO05D005829 3.2e-60 236.1 199 59.3
AUR62028786 Chenopodium quinoa HOM05D004646 ORTHO05D005829 3.2e-60 236.1 193 60.1
Sed0009585 Sechium edule HOM05D004646 ORTHO05D005829 4.2e-60 235.7 206 55.8
CDE09G0693 Ceratophyllum demersum HOM05D004646 ORTHO05D005829 7.2e-60 235.0 184 63.0
Sabra08G0112200 Salix brachista HOM05D004646 ORTHO05D005829 7.2e-60 235.0 173 64.7
PGSC0003DMG400031270 Solanum tuberosum HOM05D004646 ORTHO05D005829 9.4e-60 234.6 268 50.0
MBI05_g08286_MAGBIO Magnolia biondii HOM05D004646 ORTHO05D005829 8.0e-59 231.5 226 55.3
Glyma.18G119400 Glycine max HOM05D004646 ORTHO05D005829 1.0e-58 231.1 266 48.5
arahy.Tifrunner.gnm1.ann1.9WQ92K Arachis hypogaea HOM05D004646 ORTHO05D005829 1.8e-58 230.3 220 51.8
CAN.G58.23 Capsicum annuum HOM05D004646 ORTHO05D005829 1.8e-58 230.3 257 49.8
Solyc05g007500.4 Solanum lycopersicum HOM05D004646 ORTHO05D005829 1.8e-58 230.3 210 57.6
ECA233G2883 Erigeron canadensis HOM05D004646 ORTHO05D005829 3.0e-58 229.6 251 49.4
Hund25246 Selenicereus undatus HOM05D004646 ORTHO05D005829 4.0e-58 229.2 250 50.0
Sopen05g003380 Solanum pennellii HOM05D004646 ORTHO05D005829 6.8e-58 228.4 210 57.1
vmacro01257 Vaccinium macrocarpon HOM05D004646 ORTHO05D005829 6.8e-58 228.4 177 62.7
Rhsim12G0063600 Rhododendron simsii HOM05D004646 ORTHO05D005829 8.8e-58 228.0 301 44.5
Peaxi162Scf00541g00118 Petunia axillaris HOM05D004646 ORTHO05D005829 1.7e-56 223.8 225 52.4
THA.LOC104801795 Tarenaya hassleriana HOM05D004646 ORTHO05D005829 6.3e-56 221.9 268 47.8
Sp1g12620 Schrenkiella parvula HOM05D004646 ORTHO05D005829 8.3e-56 221.5 211 51.7
arahy.Tifrunner.gnm1.ann1.K6CIAB Arachis hypogaea HOM05D004646 ORTHO05D005829 1.1e-55 221.1 234 48.7
Thhalv10008130m.g Eutrema salsugineum HOM05D004646 ORTHO05D005829 4.1e-55 219.2 221 50.2
Nitab4.5_0001503g0160 Nicotiana tabacum HOM05D004646 ORTHO05D005829 5.4e-55 218.8 271 47.6
Glyma.08G300800 Glycine max HOM05D004646 ORTHO05D005829 7.0e-55 218.4 171 59.6
SGA_v2.0_scaffold53G19364 Striga asiatica HOM05D004646 ORTHO05D005829 7.0e-55 218.4 210 53.3
Hund05883 Selenicereus undatus HOM05D004646 ORTHO05D005829 1.2e-54 217.6 177 58.8
arahy.Tifrunner.gnm1.ann1.33WNW9 Arachis hypogaea HOM05D004646 ORTHO05D005829 4.5e-54 215.7 181 56.4
Aa31LG1G790 Aethionema arabicum HOM05D004646 ORTHO05D005829 5.9e-54 215.3 266 47.4
Zm00001eb312490 Zea mays HOM05D004646 ORTHO05D005829 1.3e-53 214.2 200 54.0
BcaB03g13106 Brassica carinata HOM05D004646 ORTHO05D005829 1.7e-53 213.8 215 50.2
A06p10240 Brassica napus HOM05D004646 ORTHO05D005829 5.0e-53 212.2 210 50.0
BraA06t24207Z Brassica rapa HOM05D004646 ORTHO05D005829 5.0e-53 212.2 210 50.0
C08p16560 Brassica napus HOM05D004646 ORTHO05D005829 1.5e-52 210.7 266 45.9
C05p12020 Brassica napus HOM05D004646 ORTHO05D005829 1.9e-52 210.3 212 49.5
BolC8t49284H Brassica oleracea HOM05D004646 ORTHO05D005829 1.9e-52 210.3 266 45.5
VMungo0251G2645 Vigna mungo HOM05D004646 ORTHO05D005829 1.9e-52 210.3 190 54.7
A08p32030 Brassica napus HOM05D004646 ORTHO05D005829 2.5e-52 209.9 221 48.9
BolC5t29957H Brassica oleracea HOM05D004646 ORTHO05D005829 2.5e-52 209.9 215 48.8
unitig_747.g21177 Utricularia gibba HOM05D004646 ORTHO05D005829 4.2e-52 209.1 177 55.4
BcaC07g38729 Brassica carinata HOM05D004646 ORTHO05D005829 7.2e-52 208.4 266 45.5
Carub.0001s1395 Capsella rubella HOM05D004646 ORTHO05D005829 7.2e-52 208.4 265 46.8
BraA08t35124Z Brassica rapa HOM05D004646 ORTHO05D005829 9.5e-52 208.0 221 48.9
Migut.L01300 Erythranthe guttata HOM05D004646 ORTHO05D005829 9.5e-52 208.0 193 55.4
Zm00001eb041360 Zea mays HOM05D004646 ORTHO05D005829 1.2e-51 207.6 200 50.5
AL1G26150 Arabidopsis lyrata HOM05D004646 ORTHO05D005829 2.8e-51 206.5 211 48.8
AT1G14270 Arabidopsis thaliana HOM05D004646 ORTHO05D005829 6.1e-51 205.3 265 43.8
Nn4g23150 Nelumbo nucifera HOM05D004646 ORTHO05D005829 1.0e-50 204.5 198 57.1
HPP92_027580 Vanilla planifolia HOM05D004646 ORTHO05D005829 1.0e-50 204.5 164 57.9
Cpa.g.sc128.19 Carica papaya HOM05D004646 ORTHO05D005829 2.4e-47 193.4 146 66.4
CARHR014690 Cardamine hirsuta HOM05D004646 ORTHO05D005829 2.7e-46 189.9 171 52.0
Lj2g0013736 Lotus japonicus HOM05D004646 ORTHO05D005829 5.6e-44 182.2 155 57.4
DCAR_027410 Daucus carota HOM05D004646 ORTHO05D005829 1.0e-42 177.9 208 49.5
Lj2g0003230 Lotus japonicus HOM05D004646 ORTHO05D005829 1.2e-41 174.5 173 51.4
Nitab4.5_0011071g0010 Nicotiana tabacum HOM05D004646 ORTHO05D005829 1.3e-40 171.0 268 40.3
FAN22G0666 Fragaria x ananassa HOM05D004646 ORTHO05D005829 1.1e-39 167.9 145 59.3
BcaC05g25320 Brassica carinata HOM05D004646 ORTHO05D005829 4.6e-38 162.5 215 42.8
Migut.L01298 Erythranthe guttata HOM05D004646 ORTHO05D005829 1.1e-34 151.4 246 37.0
Migut.L01299 Erythranthe guttata HOM05D004646 ORTHO05D005829 5.2e-34 149.1 268 35.4
FAN23G2906 Fragaria x ananassa HOM05D004646 ORTHO05D005829 2.2e-32 143.7 186 46.2
Ca_07115_v3 Cicer arietinum L. HOM05D004646 ORTHO05D005829 2.4e-31 140.2 104 59.6
arahy.Tifrunner.gnm1.ann1.J8CRVY Arachis hypogaea HOM05D004646 ORTHO05D005829 1.6e-30 137.5 164 47.6
Mapoly0033s0092 Marchantia polymorpha HOM05D004646 ORTHO05D005829 1.1e-28 131.3 191 39.8
FAN09G3389 Fragaria x ananassa HOM05D004646 ORTHO05D005829 4.3e-28 129.4 99 61.6
TAR629G0643 Trochodendron aralioides HOM05D004646 ORTHO05D005829 8.1e-27 125.2 175 38.3
Nn1g09141 Nelumbo nucifera HOM05D004646 ORTHO05D005829 2.6e-25 120.2 223 33.6
QL03p063041 Quercus lobata HOM05D004646 ORTHO05D005829 8.4e-24 115.2 204 40.2
QL03p064300 Quercus lobata HOM05D004646 ORTHO05D005829 3.2e-23 113.2 204 39.7
FAN12G3236 Fragaria x ananassa HOM05D004646 ORTHO05D005829 6.0e-22 109.0 160 45.0
PSO767G0002 Papaver somniferum HOM05D004646 ORTHO05D005829 6.0e-22 109.0 174 33.3
FAN21G2061 Fragaria x ananassa HOM05D004646 ORTHO05D005829 7.8e-22 108.6 164 44.5
FAN04G0237 Fragaria x ananassa HOM05D004646 ORTHO05D005829 3.9e-21 106.3 151 45.0
Pp3c21_22610 Physcomitrium patens HOM05D004646 ORTHO05D005829 5.1e-21 105.9 178 34.8
FAN09G2429 Fragaria x ananassa HOM05D004646 ORTHO05D005829 6.6e-21 105.5 159 44.0
FAN17G1446 Fragaria x ananassa HOM05D004646 ORTHO05D005829 1.1e-20 104.8 159 44.0
CBR_g52133 Chara braunii HOM05D004646 ORTHO05D005829 2.5e-20 103.6 150 40.0
AagrBONN_evm.TU.Sc2ySwM_228.1869 Anthoceros agrestis HOM05D004646 ORTHO05D005829 2.8e-19 100.1 147 36.7
RcHm_v2.0_Chr4g0413061 Rosa chinensis HOM05D004646 ORTHO05D005829 8.1e-19 98.6 75 54.7
SMO007G0001 Selaginella moellendorffii HOM05D004646 ORTHO05D005829 1.8e-18 97.4 148 39.9
SMO200G0049 Selaginella moellendorffii HOM05D004646 ORTHO05D005829 1.8e-18 97.4 148 39.9
MBI19_g09320_MAGBIO Magnolia biondii HOM05D004646 ORTHO05D005829 1.5e-17 94.4 120 40.0
CDE04G3684 Ceratophyllum demersum HOM05D004646 ORTHO05D005829 1.9e-15 87.4 149 36.9
PSO384G3479 Papaver somniferum HOM05D004646 ORTHO05D005829 5.4e-15 85.9 173 30.6
ATR0307G023 Amborella trichopoda HOM05D004646 ORTHO05D005829 9.3e-15 85.1 126 36.5
Os08g0436600 Oryza sativa ssp. japonica HOM05D004646 ORTHO05D005829 2.1e-06 57.4 52 42.3
VMungo0331G0231 Vigna mungo HOM05D004646 ORTHO05D012812 2.1e-06 57.4 43 55.8


User provided reference genes

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