Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G0558 Trochodendron aralioides HOM05D003980 ORTHO05D005301 4.8e-79 297.7 149 100.0
Cc04_g05920 Coffea canephora HOM05D003980 ORTHO05D005301 1.8e-54 216.1 145 77.9
Cfa018720 Carpinus fangiana HOM05D003980 ORTHO05D005301 2.0e-53 212.6 143 78.3
GSVIVG01008633001 Vitis vinifera HOM05D003980 ORTHO05D005301 7.8e-53 210.7 140 77.1
Ciclev10030650m.g Citrus clementina HOM05D003980 ORTHO05D005301 1.3e-52 209.9 140 76.4
Duzib084G0479 Durio zibethinus HOM05D003980 ORTHO05D005301 2.3e-52 209.1 125 84.0
Lj9A485G82 Lonicera japonica HOM05D003980 ORTHO05D005301 3.0e-52 208.8 143 74.8
Dinv13736 Davidia involucrata HOM05D003980 ORTHO05D005301 3.9e-52 208.4 140 76.4
Gohir.A09G248100 Gossypium hirsutum HOM05D003980 ORTHO05D005301 3.9e-52 208.4 125 82.4
Gohir.D09G248900 Gossypium hirsutum HOM05D003980 ORTHO05D005301 3.9e-52 208.4 125 82.4
Gorai.006G273300 Gossypium raimondii HOM05D003980 ORTHO05D005301 3.9e-52 208.4 125 82.4
VMungo0251G0815 Vigna mungo HOM05D003980 ORTHO05D005301 3.9e-52 208.4 140 78.6
VMungo1309G0598 Vigna mungo HOM05D003980 ORTHO05D005301 3.9e-52 208.4 141 75.2
Thecc.03G138500 Theobroma cacao HOM05D003980 ORTHO05D005301 6.6e-52 207.6 140 76.4
Hma1.2p1_1070F.1_g254120 Hydrangea macrophylla HOM05D003980 ORTHO05D005301 1.1e-51 206.8 135 80.0
Hma1.2p1_1171F.1_g263500 Hydrangea macrophylla HOM05D003980 ORTHO05D005301 1.1e-51 206.8 135 80.0
Atru.chr6.1901 Acer truncatum HOM05D003980 ORTHO05D005301 1.5e-51 206.5 135 78.5
Glyma.08G008600 Glycine max HOM05D003980 ORTHO05D005301 2.5e-51 205.7 140 75.7
Phvul.009G164700 Phaseolus vulgaris HOM05D003980 ORTHO05D005301 3.3e-51 205.3 140 75.0
MBI19_g26308_MAGBIO Magnolia biondii HOM05D003980 ORTHO05D005301 4.3e-51 204.9 130 80.0
ClCG06G018320 Citrullus lanatus HOM05D003980 ORTHO05D005301 5.6e-51 204.5 140 75.7
MELO3C026163.2 Cucumis melo HOM05D003980 ORTHO05D005301 5.6e-51 204.5 140 75.7
Migut.I00610 Erythranthe guttata HOM05D003980 ORTHO05D005301 5.6e-51 204.5 140 74.3
Lj4g0027174 Lotus japonicus HOM05D003980 ORTHO05D005301 5.6e-51 204.5 140 76.4
SalBow7G4845 Salvia bowleyana HOM05D003980 ORTHO05D005301 7.3e-51 204.1 140 74.3
arahy.Tifrunner.gnm1.ann1.1NY8SK Arachis hypogaea HOM05D003980 ORTHO05D005301 9.5e-51 203.8 140 76.4
arahy.Tifrunner.gnm1.ann1.2VM69K Arachis hypogaea HOM05D003980 ORTHO05D005301 9.5e-51 203.8 140 76.4
CsaV3_1G000110 Cucumis sativus L. HOM05D003980 ORTHO05D005301 1.2e-50 203.4 140 75.0
TWI14G0519 Tripterygium wilfordii HOM05D003980 ORTHO05D005301 1.2e-50 203.4 124 80.6
COL.COLO4_37237 Corchorus olitorius HOM05D003980 ORTHO05D005301 1.6e-50 203.0 140 75.0
Dinv23210 Davidia involucrata HOM05D003980 ORTHO05D005301 2.1e-50 202.6 140 75.0
Lj1g0007025 Lotus japonicus HOM05D003980 ORTHO05D005301 2.8e-50 202.2 125 78.4
Medtr8g100000 Medicago truncatula HOM05D003980 ORTHO05D005301 2.8e-50 202.2 140 76.4
Nn4g22168 Nelumbo nucifera HOM05D003980 ORTHO05D005301 3.6e-50 201.8 128 78.9
Lalb_Chr12g0202411 Lupinus albus HOM05D003980 ORTHO05D005301 6.2e-50 201.1 140 75.0
Potri.012G105800 Populus trichocarpa HOM05D003980 ORTHO05D005301 6.2e-50 201.1 141 73.8
Rhsim08G0195900 Rhododendron simsii HOM05D003980 ORTHO05D005301 6.2e-50 201.1 125 80.8
MSTRG.11233 Avicennia marina HOM05D003980 ORTHO05D005301 8.0e-50 200.7 140 74.3
CANSAT56G3290 Cannabis sativa HOM05D003980 ORTHO05D005301 8.0e-50 200.7 125 81.6
Peaxi162Scf00314g00535 Petunia axillaris HOM05D003980 ORTHO05D005301 8.0e-50 200.7 130 78.5
Solyc03g118350.4 Solanum lycopersicum HOM05D003980 ORTHO05D005301 8.0e-50 200.7 123 81.3
Sopen03g037250 Solanum pennellii HOM05D003980 ORTHO05D005301 8.0e-50 200.7 123 81.3
Nitab4.5_0002450g0020 Nicotiana tabacum HOM05D003980 ORTHO05D005301 1.1e-49 200.3 125 80.0
QL10p000901 Quercus lobata HOM05D003980 ORTHO05D005301 1.1e-49 200.3 142 73.9
Lalb_Chr13g0297021 Lupinus albus HOM05D003980 ORTHO05D005301 1.8e-49 199.5 140 74.3
Sed0025035 Sechium edule HOM05D003980 ORTHO05D005301 1.8e-49 199.5 140 73.6
CAN.G843.24 Capsicum annuum HOM05D003980 ORTHO05D005301 2.3e-49 199.1 125 80.0
Lalb_Chr23g0272921 Lupinus albus HOM05D003980 ORTHO05D005301 2.3e-49 199.1 139 73.4
PGSC0003DMG401014249 Solanum tuberosum HOM05D003980 ORTHO05D005301 2.3e-49 199.1 123 81.3
Manes.06G125700 Manihot esculenta HOM05D003980 ORTHO05D005301 3.1e-49 198.7 135 76.3
Potri.015G105000 Populus trichocarpa HOM05D003980 ORTHO05D005301 5.2e-49 198.0 140 73.6
Prupe.5G143400 Prunus persica HOM05D003980 ORTHO05D005301 6.8e-49 197.6 140 74.3
Sc04g0000260 Simmondsia chinensis HOM05D003980 ORTHO05D005301 6.8e-49 197.6 140 71.4
TPR.G21586 Trifolium pratense HOM05D003980 ORTHO05D005301 8.9e-49 197.2 140 71.4
CSS0000982 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D005301 1.2e-48 196.8 122 81.1
Ca_17584_v3 Cicer arietinum L. HOM05D003980 ORTHO05D005301 1.2e-48 196.8 140 74.3
PGR083G0225 Punica granatum HOM05D003980 ORTHO05D005301 1.2e-48 196.8 135 74.8
vmacro19166 Vaccinium macrocarpon HOM05D003980 ORTHO05D005301 1.2e-48 196.8 125 79.2
Phvul.002G282600 Phaseolus vulgaris HOM05D003980 ORTHO05D005301 1.5e-48 196.4 133 78.2
Aqoxy5G03175 Aquilegia oxysepala HOM05D003980 ORTHO05D005301 3.4e-48 195.3 105 89.5
Haze_07113 Corylus avellana HOM05D003980 ORTHO05D005301 4.4e-48 194.9 122 81.1
arahy.Tifrunner.gnm1.ann1.JJXJ29 Arachis hypogaea HOM05D003980 ORTHO05D005301 5.8e-48 194.5 137 74.5
Ah.02g114660 Amaranthus hybridus HOM05D003980 ORTHO05D005301 7.5e-48 194.1 125 76.8
Glyma.06G165302 Glycine max HOM05D003980 ORTHO05D005301 7.5e-48 194.1 140 72.1
Hund10056 Selenicereus undatus HOM05D003980 ORTHO05D005301 9.8e-48 193.7 140 70.7
Duzib205G0834 Durio zibethinus HOM05D003980 ORTHO05D005301 1.3e-47 193.4 108 87.0
FAN04G0599 Fragaria x ananassa HOM05D003980 ORTHO05D005301 1.3e-47 193.4 133 75.2
FAN08G3345 Fragaria x ananassa HOM05D003980 ORTHO05D005301 1.3e-47 193.4 133 75.2
FvH4_5g09220 Fragaria vesca HOM05D003980 ORTHO05D005301 1.7e-47 193.0 140 72.1
FAN18G3345 Fragaria x ananassa HOM05D003980 ORTHO05D005301 1.7e-47 193.0 140 72.1
Cpa.g.sc4.108 Carica papaya HOM05D003980 ORTHO05D005301 2.2e-47 192.6 126 75.4
Sabra12G0078100 Salix brachista HOM05D003980 ORTHO05D005301 2.2e-47 192.6 135 74.8
EL10Ac5g11306 Beta vulgaris HOM05D003980 ORTHO05D005301 2.9e-47 192.2 124 76.6
Glyma.04G200300 Glycine max HOM05D003980 ORTHO05D005301 2.9e-47 192.2 140 71.4
RcHm_v2.0_Chr7g0188941 Rosa chinensis HOM05D003980 ORTHO05D005301 2.9e-47 192.2 138 72.5
Eucgr.B00073 Eucalyptus grandis HOM05D003980 ORTHO05D005301 3.7e-47 191.8 120 79.2
FAN13G1995 Fragaria x ananassa HOM05D003980 ORTHO05D005301 3.7e-47 191.8 133 74.4
Sabra15G0125200 Salix brachista HOM05D003980 ORTHO05D005301 3.7e-47 191.8 122 80.3
arahy.Tifrunner.gnm1.ann1.US1BEE Arachis hypogaea HOM05D003980 ORTHO05D005301 4.9e-47 191.4 137 73.7
AUR62009517 Chenopodium quinoa HOM05D003980 ORTHO05D005301 4.9e-47 191.4 125 76.0
AUR62034771 Chenopodium quinoa HOM05D003980 ORTHO05D005301 4.9e-47 191.4 125 76.0
DCAR_021407 Daucus carota HOM05D003980 ORTHO05D005301 6.4e-47 191.0 110 82.7
TPR.G12812 Trifolium pratense HOM05D003980 ORTHO05D005301 6.4e-47 191.0 135 74.1
TWI39G0366 Tripterygium wilfordii HOM05D003980 ORTHO05D005301 1.1e-46 190.3 124 75.0
MD14G1148800 Malus domestica HOM05D003980 ORTHO05D005301 1.9e-46 189.5 140 70.7
DCAR_025658 Daucus carota HOM05D003980 ORTHO05D005301 3.2e-46 188.7 126 74.6
Lj5A88T63 Lonicera japonica HOM05D003980 ORTHO05D005301 4.1e-46 188.3 122 75.4
Medtr3g498735 Medicago truncatula HOM05D003980 ORTHO05D005301 9.2e-46 187.2 140 67.9
Psat5g054480 Pisum sativum HOM05D003980 ORTHO05D005301 9.2e-46 187.2 140 68.6
Ca_16085_v3 Cicer arietinum L. HOM05D003980 ORTHO05D005301 1.2e-45 186.8 140 69.3
PSO832G3889 Papaver somniferum HOM05D003980 ORTHO05D005301 1.2e-45 186.8 142 65.5
MD06G1132400 Malus domestica HOM05D003980 ORTHO05D005301 1.6e-45 186.4 122 77.0
CSS0005251 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D005301 2.0e-45 186.0 109 82.6
PSO591G0475 Papaver somniferum HOM05D003980 ORTHO05D005301 4.6e-45 184.9 141 65.2
Hund02497 Selenicereus undatus HOM05D003980 ORTHO05D005301 4.6e-45 184.9 140 67.1
CSS0048257 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D005301 7.8e-45 184.1 109 81.7
HPP92_006911 Vanilla planifolia HOM05D003980 ORTHO05D005301 2.3e-44 182.6 123 72.4
THA.LOC104821537 Tarenaya hassleriana HOM05D003980 ORTHO05D005301 5.0e-44 181.4 122 75.4
Carub.0006s2147 Capsella rubella HOM05D003980 ORTHO05D005301 8.6e-44 180.6 122 73.0
unitig_22.g6271 Utricularia gibba HOM05D003980 ORTHO05D005301 1.1e-43 180.3 122 70.5
Zm00001eb340730 Zea mays HOM05D003980 ORTHO05D005301 1.1e-43 180.3 126 72.2
ECA232G4466 Erigeron canadensis HOM05D003980 ORTHO05D005301 1.9e-43 179.5 103 82.5
Thhalv10003616m.g Eutrema salsugineum HOM05D003980 ORTHO05D005301 2.5e-43 179.1 122 73.0
Sp2g23510 Schrenkiella parvula HOM05D003980 ORTHO05D005301 5.6e-43 177.9 122 72.1
AL6G34990 Arabidopsis lyrata HOM05D003980 ORTHO05D005301 7.3e-43 177.6 120 73.3
Os01g0311500 Oryza sativa ssp. japonica HOM05D003980 ORTHO05D005301 9.5e-43 177.2 127 66.1
Os01g0347000 Oryza sativa ssp. japonica HOM05D003980 ORTHO05D005301 1.2e-42 176.8 108 75.9
BcaNung01844 Brassica carinata HOM05D003980 ORTHO05D005301 2.1e-42 176.0 120 71.7
C07p43870 Brassica napus HOM05D003980 ORTHO05D005301 2.1e-42 176.0 120 71.7
BolC7t44915H Brassica oleracea HOM05D003980 ORTHO05D005301 2.1e-42 176.0 120 71.7
Aa31LG11G3070 Aethionema arabicum HOM05D003980 ORTHO05D005301 2.8e-42 175.6 122 72.1
AT5G23720 Arabidopsis thaliana HOM05D003980 ORTHO05D005301 2.8e-42 175.6 120 72.5
A06p34620 Brassica napus HOM05D003980 ORTHO05D005301 4.7e-42 174.9 120 70.8
BraA06t26390Z Brassica rapa HOM05D003980 ORTHO05D005301 4.7e-42 174.9 120 70.8
Nn3g16303 Nelumbo nucifera HOM05D003980 ORTHO05D005301 8.1e-42 174.1 126 67.5
Zm00001eb130450 Zea mays HOM05D003980 ORTHO05D005301 1.1e-41 173.7 119 68.1
BcaNung01843 Brassica carinata HOM05D003980 ORTHO05D005301 2.3e-41 172.6 120 70.0
HanXRQChr09g0273931 Helianthus annuus HOM05D003980 ORTHO05D005301 2.3e-41 172.6 108 75.9
CDE01G0794 Ceratophyllum demersum HOM05D003980 ORTHO05D005301 6.8e-41 171.0 130 66.2
HanXRQChr16g0498871 Helianthus annuus HOM05D003980 ORTHO05D005301 1.2e-40 170.2 108 74.1
Lsat_1_v5_gn_4_84700 Lactuca sativa HOM05D003980 ORTHO05D005301 1.2e-40 170.2 102 77.5
ATR0693G246 Amborella trichopoda HOM05D003980 ORTHO05D005301 1.1e-38 163.7 102 72.5
Psat5g054520 Pisum sativum HOM05D003980 ORTHO05D005301 3.2e-38 162.2 141 62.4
SEGI_36335 Sequoiadendron giganteum HOM05D003980 ORTHO05D005301 5.6e-35 151.4 101 67.3
SHI14124 Sapria himalayana HOM05D003980 ORTHO05D005301 9.9e-32 140.6 106 60.4
CDE05G3070 Ceratophyllum demersum HOM05D003980 ORTHO05D005301 2.2e-31 139.4 100 63.0
Ca_10885_v3 Cicer arietinum L. HOM05D003980 ORTHO05D005301 3.5e-29 132.1 88 72.7
Ca_14153_v3 Cicer arietinum L. HOM05D003980 ORTHO05D005301 5.1e-28 128.3 93 67.7
Actinidia18312 Actinidia chinensis HOM05D003980 ORTHO05D005301 4.3e-27 125.2 80 81.2
Mapoly0024s0055 Marchantia polymorpha HOM05D003980 ORTHO05D005301 7.1e-22 107.8 94 50.0
Actinidia25530 Actinidia chinensis HOM05D003980 ORTHO05D005301 1.2e-21 107.1 59 81.4
SMO116G0359 Selaginella moellendorffii HOM05D003980 ORTHO05D005301 9.6e-19 97.4 77 55.8
Nitab4.5_0000663g0190 Nicotiana tabacum HOM05D003980 ORTHO05D005301 2.8e-18 95.9 53 79.2
Pp3c9_1160 Physcomitrium patens HOM05D003980 ORTHO05D005301 1.8e-17 93.2 76 52.6
Pp3c9_1168 Physcomitrium patens HOM05D003980 ORTHO05D005301 1.8e-17 93.2 76 52.6
TPR.G30827 Trifolium pratense HOM05D003980 ORTHO05D005301 3.1e-17 92.4 55 85.5
Cre08.g375000 Chlamydomonas reinhardtii HOM05D003980 ORTHO05D004632 4.9e-07 58.5 93 36.6


User provided reference genes

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