Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G0544 Trochodendron aralioides HOM05D005499 ORTHO05D006666 1.7e-117 426.0 214 100.0
TAR629G1334 Trochodendron aralioides HOM05D005499 ORTHO05D006666 4.8e-56 221.9 134 87.3
Dinv33378 Davidia involucrata HOM05D005499 ORTHO05D006666 2.2e-53 213.0 134 81.3
PSO478G5160 Papaver somniferum HOM05D005499 ORTHO05D006666 8.5e-53 211.1 133 78.9
Cpa.g.sc130.24 Carica papaya HOM05D005499 ORTHO05D006666 1.5e-52 210.3 134 81.3
MBI11_g21381_MAGBIO Magnolia biondii HOM05D005499 ORTHO05D006666 5.5e-52 208.4 134 79.9
PSO782G3924 Papaver somniferum HOM05D005499 ORTHO05D006666 1.2e-51 207.2 133 77.4
Hma1.2p1_0279F.1_g112320 Hydrangea macrophylla HOM05D005499 ORTHO05D006666 2.1e-51 206.5 133 79.7
CiPaw.03G051000 Carya illinoinensis HOM05D005499 ORTHO05D006666 8.0e-51 204.5 133 80.5
Haze_14820 Corylus avellana HOM05D005499 ORTHO05D006666 2.3e-50 203.0 135 79.3
DCAR_011296 Daucus carota HOM05D005499 ORTHO05D006666 4.0e-50 202.2 133 75.9
Eucgr.J02294 Eucalyptus grandis HOM05D005499 ORTHO05D006666 4.0e-50 202.2 134 79.9
Gorai.012G089400 Gossypium raimondii HOM05D005499 ORTHO05D006666 4.0e-50 202.2 137 79.6
HanXRQChr01g0030421 Helianthus annuus HOM05D005499 ORTHO05D006666 6.8e-50 201.4 181 63.0
Nn4g24319 Nelumbo nucifera HOM05D005499 ORTHO05D006666 6.8e-50 201.4 134 77.6
Sabra16G0216600 Salix brachista HOM05D005499 ORTHO05D006666 8.8e-50 201.1 140 75.0
Lalb_Chr02g0157891 Lupinus albus HOM05D005499 ORTHO05D006666 1.2e-49 200.7 133 79.7
Lalb_Chr21g0317581 Lupinus albus HOM05D005499 ORTHO05D006666 3.4e-49 199.1 133 80.5
Oeu003270.1 Olea europaea HOM05D005499 ORTHO05D006666 3.4e-49 199.1 133 76.7
Potri.001G335600 Populus trichocarpa HOM05D005499 ORTHO05D006666 3.4e-49 199.1 133 76.7
TWI36G0940 Tripterygium wilfordii HOM05D005499 ORTHO05D006666 3.4e-49 199.1 134 78.4
Duzib264G0656 Durio zibethinus HOM05D005499 ORTHO05D006666 4.4e-49 198.7 138 79.7
Lj6g0007933 Lotus japonicus HOM05D005499 ORTHO05D006666 9.8e-49 197.6 133 77.4
ECA238G0236 Erigeron canadensis HOM05D005499 ORTHO05D006666 1.3e-48 197.2 133 78.9
Rhsim10G0010400 Rhododendron simsii HOM05D005499 ORTHO05D006666 1.3e-48 197.2 133 79.7
Aqoxy5G03538 Aquilegia oxysepala HOM05D005499 ORTHO05D006666 1.7e-48 196.8 136 73.5
Cfa007270 Carpinus fangiana HOM05D005499 ORTHO05D006666 1.7e-48 196.8 133 77.4
Duzib187G1007 Durio zibethinus HOM05D005499 ORTHO05D006666 1.7e-48 196.8 134 80.6
QL02p072772 Quercus lobata HOM05D005499 ORTHO05D006666 1.7e-48 196.8 132 76.5
Thecc.04G028500 Theobroma cacao HOM05D005499 ORTHO05D006666 1.7e-48 196.8 134 79.9
Atru.chr6.2492 Acer truncatum HOM05D005499 ORTHO05D006666 2.8e-48 196.1 134 76.1
CSS0020557 Camellia sinensis var. sinensis HOM05D005499 ORTHO05D006666 3.7e-48 195.7 134 76.9
VMungo0464G1619 Vigna mungo HOM05D005499 ORTHO05D006666 8.3e-48 194.5 133 75.9
Gohir.D04G079400 Gossypium hirsutum HOM05D005499 ORTHO05D006666 1.1e-47 194.1 134 78.4
Phvul.003G138900 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 1.4e-47 193.7 133 77.4
Phvul.003G139152 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 1.4e-47 193.7 133 77.4
TWI56G1275 Tripterygium wilfordii HOM05D005499 ORTHO05D006666 1.4e-47 193.7 128 78.9
Cc10_g08070 Coffea canephora HOM05D005499 ORTHO05D006666 5.4e-47 191.8 134 76.9
COL.COLO4_29287 Corchorus olitorius HOM05D005499 ORTHO05D006666 7.0e-47 191.4 134 78.4
Glyma.19G077100 Glycine max HOM05D005499 ORTHO05D006666 7.0e-47 191.4 133 75.2
Actinidia05936 Actinidia chinensis HOM05D005499 ORTHO05D006666 1.2e-46 190.7 137 73.7
Ciclev10017154m.g Citrus clementina HOM05D005499 ORTHO05D006666 1.2e-46 190.7 134 75.4
Prupe.6G125800 Prunus persica HOM05D005499 ORTHO05D006666 2.0e-46 189.9 134 73.1
Solyc11g010180.2 Solanum lycopersicum HOM05D005499 ORTHO05D006666 2.0e-46 189.9 157 64.3
Ca_25364_v3 Cicer arietinum L. HOM05D005499 ORTHO05D006666 2.7e-46 189.5 134 75.4
PGSC0003DMG400016154 Solanum tuberosum HOM05D005499 ORTHO05D006666 2.7e-46 189.5 133 72.2
Psat1g031800 Pisum sativum HOM05D005499 ORTHO05D006666 3.5e-46 189.1 133 74.4
Sc10g0004570 Simmondsia chinensis HOM05D005499 ORTHO05D006666 3.5e-46 189.1 133 68.4
CANSAT11G2604 Cannabis sativa HOM05D005499 ORTHO05D006666 4.5e-46 188.7 133 75.9
Glyma.05G073700 Glycine max HOM05D005499 ORTHO05D006666 4.5e-46 188.7 133 74.4
MSTRG.3267 Avicennia marina HOM05D005499 ORTHO05D006666 7.7e-46 188.0 124 75.0
TPR.G3708 Trifolium pratense HOM05D005499 ORTHO05D006666 7.7e-46 188.0 133 73.7
Sopen11g004960 Solanum pennellii HOM05D005499 ORTHO05D006666 1.3e-45 187.2 133 72.9
FAN05G0237 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.7e-45 186.8 147 70.7
FAN05G2282 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.7e-45 186.8 147 70.7
FAN05G4095 Fragaria x ananassa HOM05D005499 ORTHO05D006666 2.9e-45 186.0 139 74.1
Peaxi162Scf00016g00048 Petunia axillaris HOM05D005499 ORTHO05D006666 2.9e-45 186.0 142 69.0
Phvul.003G262000 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 2.9e-45 186.0 133 74.4
Migut.K01440 Erythranthe guttata HOM05D005499 ORTHO05D006666 3.8e-45 185.7 133 72.2
Gohir.D10G084868 Gossypium hirsutum HOM05D005499 ORTHO05D006666 3.8e-45 185.7 134 76.9
Nitab4.5_0012484g0010 Nicotiana tabacum HOM05D005499 ORTHO05D006666 3.8e-45 185.7 136 67.6
RcHm_v2.0_Chr3g0449841 Rosa chinensis HOM05D005499 ORTHO05D006666 3.8e-45 185.7 133 76.7
SalBow7G4317 Salvia bowleyana HOM05D005499 ORTHO05D006666 3.8e-45 185.7 132 72.0
FvH4_6g02050 Fragaria vesca HOM05D005499 ORTHO05D006666 8.6e-45 184.5 135 74.8
FAN05G1403 Fragaria x ananassa HOM05D005499 ORTHO05D006666 8.6e-45 184.5 139 73.4
FAN09G0379 Fragaria x ananassa HOM05D005499 ORTHO05D006666 8.6e-45 184.5 135 74.8
FAN14G4216 Fragaria x ananassa HOM05D005499 ORTHO05D006666 8.6e-45 184.5 135 74.8
Gorai.011G092800 Gossypium raimondii HOM05D005499 ORTHO05D006666 8.6e-45 184.5 134 76.1
Manes.15G156800 Manihot esculenta HOM05D005499 ORTHO05D006666 8.6e-45 184.5 134 73.1
ClCG04G001400 Citrullus lanatus HOM05D005499 ORTHO05D006666 1.1e-44 184.1 155 64.5
arahy.Tifrunner.gnm1.ann1.C4BPDT Arachis hypogaea HOM05D005499 ORTHO05D006666 1.9e-44 183.3 135 73.3
Lsat_1_v5_gn_3_10761 Lactuca sativa HOM05D005499 ORTHO05D006666 1.9e-44 183.3 137 69.3
Nitab4.5_0000743g0030 Nicotiana tabacum HOM05D005499 ORTHO05D006666 2.5e-44 183.0 136 66.9
Aqoxy3G01444 Aquilegia oxysepala HOM05D005499 ORTHO05D006666 3.3e-44 182.6 135 69.6
PGSC0003DMG400023637 Solanum tuberosum HOM05D005499 ORTHO05D006666 5.6e-44 181.8 133 68.4
arahy.Tifrunner.gnm1.ann1.JB8R4I Arachis hypogaea HOM05D005499 ORTHO05D006666 7.3e-44 181.4 135 72.6
Medtr6g078300 Medicago truncatula HOM05D005499 ORTHO05D006666 1.2e-43 180.6 134 73.1
PSO782G2325 Papaver somniferum HOM05D005499 ORTHO05D006666 1.2e-43 180.6 120 74.2
FvH4_4g13440 Fragaria vesca HOM05D005499 ORTHO05D006666 1.6e-43 180.3 135 73.3
FAN12G0501 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.6e-43 180.3 135 73.3
AUR62013851 Chenopodium quinoa HOM05D005499 ORTHO05D006666 2.8e-43 179.5 135 67.4
FAN14G1883 Fragaria x ananassa HOM05D005499 ORTHO05D006666 3.6e-43 179.1 135 72.6
AUR62036750 Chenopodium quinoa HOM05D005499 ORTHO05D006666 8.0e-43 177.9 133 68.4
MELO3C008981.2 Cucumis melo HOM05D005499 ORTHO05D006666 1.0e-42 177.6 153 62.1
FAN14G2627 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.8e-42 176.8 135 71.9
SGA_v2.0_scaffold47G17558 Striga asiatica HOM05D005499 ORTHO05D006666 2.3e-42 176.4 133 68.4
Gohir.A10G160300 Gossypium hirsutum HOM05D005499 ORTHO05D006666 6.8e-42 174.9 106 84.9
AL3G10400 Arabidopsis lyrata HOM05D005499 ORTHO05D006666 1.2e-41 174.1 110 79.1
Medtr4g073700 Medicago truncatula HOM05D005499 ORTHO05D006666 2.0e-41 173.3 133 71.4
Sed0019428 Sechium edule HOM05D005499 ORTHO05D006666 2.6e-41 172.9 134 69.4
Psat7g172960 Pisum sativum HOM05D005499 ORTHO05D006666 3.4e-41 172.6 133 69.9
unitig_32.g10669 Utricularia gibba HOM05D005499 ORTHO05D006666 7.5e-41 171.4 142 66.9
CsaV3_4G031040 Cucumis sativus L. HOM05D005499 ORTHO05D006666 9.8e-41 171.0 170 55.3
Thhalv10014999m.g Eutrema salsugineum HOM05D005499 ORTHO05D006666 9.8e-41 171.0 124 72.6
Ah.00g000560 Amaranthus hybridus HOM05D005499 ORTHO05D006666 1.3e-40 170.6 133 66.2
Carub.0003s0032 Capsella rubella HOM05D005499 ORTHO05D006666 3.7e-40 169.1 110 76.4
CARHR199040 Cardamine hirsuta HOM05D005499 ORTHO05D006666 8.3e-40 167.9 120 74.2
Gohir.A05G341200 Gossypium hirsutum HOM05D005499 ORTHO05D006666 8.3e-40 167.9 136 67.6
Hund13392 Selenicereus undatus HOM05D005499 ORTHO05D006666 2.4e-39 166.4 135 65.2
EL10Ac2g02820 Beta vulgaris HOM05D005499 ORTHO05D006666 3.2e-39 166.0 135 66.7
A03p32370 Brassica napus HOM05D005499 ORTHO05D006666 3.2e-39 166.0 110 78.2
C03p39430 Brassica napus HOM05D005499 ORTHO05D006666 3.2e-39 166.0 110 78.2
BolC3t16211H Brassica oleracea HOM05D005499 ORTHO05D006666 3.2e-39 166.0 110 78.2
BraA03t12407Z Brassica rapa HOM05D005499 ORTHO05D006666 3.2e-39 166.0 110 78.2
Aa31LG5G10870 Aethionema arabicum HOM05D005499 ORTHO05D006666 4.1e-39 165.6 120 72.5
CAN.G905.22 Capsicum annuum HOM05D005499 ORTHO05D006666 1.2e-38 164.1 135 63.7
HPP92_006243 Vanilla planifolia HOM05D005499 ORTHO05D006666 1.2e-38 164.1 128 67.2
QL05p048106 Quercus lobata HOM05D005499 ORTHO05D006666 5.9e-38 161.8 122 69.7
Nitab4.5_0003764g0020 Nicotiana tabacum HOM05D005499 ORTHO05D006666 2.3e-37 159.8 133 60.9
AT3G01740 Arabidopsis thaliana HOM05D005499 ORTHO05D006666 1.1e-36 157.5 110 72.7
Os12g0244200 Oryza sativa ssp. japonica HOM05D005499 ORTHO05D006666 1.1e-36 157.5 133 62.4
THA.LOC104822403 Tarenaya hassleriana HOM05D005499 ORTHO05D006666 1.9e-36 156.8 132 63.6
Cc07_g00480 Coffea canephora HOM05D005499 ORTHO05D006666 3.3e-36 156.0 134 64.2
CARHR075180 Cardamine hirsuta HOM05D005499 ORTHO05D006666 5.6e-36 155.2 90 82.2
Sp3g00320 Schrenkiella parvula HOM05D005499 ORTHO05D006666 2.8e-35 152.9 90 81.1
ATR1098G108 Amborella trichopoda HOM05D005499 ORTHO05D006666 1.0e-34 151.0 116 69.0
AT5G14290 Arabidopsis thaliana HOM05D005499 ORTHO05D006666 1.4e-34 150.6 124 65.3
AL6G24990 Arabidopsis lyrata HOM05D005499 ORTHO05D006666 4.0e-34 149.1 100 74.0
Zm00001eb328460 Zea mays HOM05D005499 ORTHO05D006666 4.0e-34 149.1 133 59.4
Nn1g08773 Nelumbo nucifera HOM05D005499 ORTHO05D006666 8.9e-34 147.9 134 63.4
Thhalv10021760m.g Eutrema salsugineum HOM05D005499 ORTHO05D006666 1.2e-33 147.5 113 69.0
FAN21G0236 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.5e-33 147.1 123 65.0
CARHR105740 Cardamine hirsuta HOM05D005499 ORTHO05D006666 5.8e-33 145.2 112 67.9
SHI11403 Sapria himalayana HOM05D005499 ORTHO05D006666 5.8e-33 145.2 109 67.0
Sed0018883 Sechium edule HOM05D005499 ORTHO05D006666 4.1e-31 139.0 125 61.6
SEGI_30393 Sequoiadendron giganteum HOM05D005499 ORTHO05D006666 1.2e-27 127.5 109 61.5
Gohir.1Z049635 Gossypium hirsutum HOM05D005499 ORTHO05D006666 8.3e-24 114.8 92 69.6
FAN02G3728 Fragaria x ananassa HOM05D005499 ORTHO05D006666 4.6e-22 109.0 133 49.6
CBR_g38683 Chara braunii HOM05D005499 ORTHO05D006666 8.6e-21 104.8 132 43.9
Mapoly0005s0032 Marchantia polymorpha HOM05D005499 ORTHO05D006666 4.0e-18 95.9 106 47.2
Pp3c26_11040 Physcomitrium patens HOM05D005499 ORTHO05D006666 5.2e-18 95.5 92 50.0
SMO164G0004 Selaginella moellendorffii HOM05D005499 ORTHO05D006666 6.8e-18 95.1 106 47.2
AagrBONN_evm.TU.Sc2ySwM_362.2497 Anthoceros agrestis HOM05D005499 ORTHO05D006666 7.6e-17 91.7 106 44.3
Dinv24762 Davidia involucrata HOM05D003270 ORTHO05D003662 8.4e-16 88.2 73 68.5
CARHR266370 Cardamine hirsuta HOM05D005499 ORTHO05D006666 2.7e-14 83.2 51 72.5
Actinidia36173 Actinidia chinensis HOM05D005499 ORTHO05D006666 2.5e-12 76.6 81 56.8
TAR374G0914 Trochodendron aralioides HOM05D005499 ORTHO05D006666 2.5e-12 76.6 92 51.1
Cre12.g546000 Chlamydomonas reinhardtii HOM05D005499 ORTHO05D006666 2.9e-08 63.2 99 36.4
Dinv25304 Davidia involucrata HOM05D000009 ORTHO05D000008 4.9e-08 62.4 54 66.7
MCO16G647 Micromonas commoda HOM05D005499 ORTHO05D006666 6.4e-08 62.0 129 32.6


User provided reference genes

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