Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G0468 Trochodendron aralioides HOM05D003549 ORTHO05D004223 9.8e-25 116.3 73 100.0
TAR629G2438 Trochodendron aralioides HOM05D003549 ORTHO05D004223 1.3e-21 105.9 74 81.1
Glyma.04G181200 Glycine max HOM05D003549 ORTHO05D004223 4.2e-20 100.9 74 86.5
Phvul.001G059000 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 9.5e-20 99.8 74 82.4
CiPaw.11G028500 Carya illinoinensis HOM05D003549 ORTHO05D004223 1.2e-19 99.4 72 83.3
Haze_07495 Corylus avellana HOM05D003549 ORTHO05D004223 1.2e-19 99.4 74 85.1
Phvul.009G179900 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 1.6e-19 99.0 74 83.8
Glyma.14G134200 Glycine max HOM05D003549 ORTHO05D004223 2.1e-19 98.6 74 83.8
Glyma.06G183700 Glycine max HOM05D003549 ORTHO05D004223 3.6e-19 97.8 74 83.8
Lj6g0023924 Lotus japonicus HOM05D003549 ORTHO05D004223 3.6e-19 97.8 74 81.1
Lj1g0007079 Lotus japonicus HOM05D003549 ORTHO05D004223 8.0e-19 96.7 74 81.1
Glyma.17G198800 Glycine max HOM05D003549 ORTHO05D004223 1.4e-18 95.9 69 85.5
CSS0022405 Camellia sinensis var. sinensis HOM05D003549 ORTHO05D004223 1.8e-18 95.5 74 86.5
MBI15_g31119_MAGBIO Magnolia biondii HOM05D003549 ORTHO05D004223 1.8e-18 95.5 73 87.7
Actinidia19094 Actinidia chinensis HOM05D003549 ORTHO05D004223 2.3e-18 95.1 74 83.8
Nn8g39923 Nelumbo nucifera HOM05D003549 ORTHO05D004223 2.3e-18 95.1 74 74.3
TAR622G0024 Trochodendron aralioides HOM05D003549 ORTHO05D004223 2.3e-18 95.1 74 83.8
TAR622G1417 Trochodendron aralioides HOM05D003549 ORTHO05D004223 2.3e-18 95.1 74 83.8
GSVIVG01032498001 Vitis vinifera HOM05D003549 ORTHO05D004223 3.0e-18 94.7 74 78.4
Actinidia33056 Actinidia chinensis HOM05D000215 ORTHO05D003454 4.0e-18 94.4 74 83.8
Ciclev10023184m.g Citrus clementina HOM05D003549 ORTHO05D004223 6.8e-18 93.6 74 83.8
RcHm_v2.0_Chr7g0193821 Rosa chinensis HOM05D003549 ORTHO05D004223 6.8e-18 93.6 71 81.7
Ca_16195_v3 Cicer arietinum L. HOM05D003549 ORTHO05D004223 8.9e-18 93.2 74 77.0
Lalb_Chr08g0236401 Lupinus albus HOM05D003549 ORTHO05D004223 8.9e-18 93.2 74 79.7
MD06G1177000 Malus domestica HOM05D003549 ORTHO05D004223 1.2e-17 92.8 73 80.8
MD14G1183200 Malus domestica HOM05D003549 ORTHO05D004223 1.2e-17 92.8 73 82.2
Nn2g12408 Nelumbo nucifera HOM05D003549 ORTHO05D004223 1.2e-17 92.8 72 87.5
Cc04_g12860 Coffea canephora HOM05D003549 ORTHO05D004223 1.5e-17 92.4 76 77.6
FAN04G1549 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.5e-17 92.4 71 81.7
FAN08G2999 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.5e-17 92.4 71 81.7
FAN13G2761 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.5e-17 92.4 71 81.7
Prupe.5G175700 Prunus persica HOM05D003549 ORTHO05D004223 1.5e-17 92.4 73 83.6
CiPaw.12G025200 Carya illinoinensis HOM05D003549 ORTHO05D004223 2.0e-17 92.0 72 72.2
PSO017G2368 Papaver somniferum HOM05D003549 ORTHO05D004223 2.0e-17 92.0 74 73.0
RcHm_v2.0_Chr7g0184521 Rosa chinensis HOM05D003549 ORTHO05D004223 2.6e-17 91.7 71 80.3
Dinv09155 Davidia involucrata HOM05D003549 ORTHO05D004223 4.4e-17 90.9 74 78.4
FvH4_5g05150 Fragaria vesca HOM05D003549 ORTHO05D004223 4.4e-17 90.9 71 81.7
FAN18G4010 Fragaria x ananassa HOM05D003549 ORTHO05D004223 4.4e-17 90.9 71 81.7
ClCG01G013030 Citrullus lanatus HOM05D003549 ORTHO05D004223 5.7e-17 90.5 74 81.1
PSO478G4862 Papaver somniferum HOM05D003549 ORTHO05D004223 5.7e-17 90.5 74 71.6
Psat5g114160 Pisum sativum HOM05D003549 ORTHO05D004223 5.7e-17 90.5 74 78.4
Rhsim12G0163400 Rhododendron simsii HOM05D003549 ORTHO05D004223 9.8e-17 89.7 72 69.4
TWI81G0050 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 9.8e-17 89.7 74 73.0
TWI81G1057 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 9.8e-17 89.7 74 73.0
Oeu000929.1 Olea europaea HOM05D003549 ORTHO05D004223 1.3e-16 89.4 74 82.4
Potri.001G334600 Populus trichocarpa HOM05D003549 ORTHO05D004223 1.3e-16 89.4 68 85.3
Actinidia04982 Actinidia chinensis HOM05D000215 ORTHO05D003454 1.7e-16 89.0 74 79.7
CsaV3_1G008390 Cucumis sativus L. HOM05D003549 ORTHO05D004223 1.7e-16 89.0 74 79.7
Medtr3g078130 Medicago truncatula HOM05D003549 ORTHO05D004223 1.7e-16 89.0 74 79.7
Hma1.2p1_0176F.1_g077660 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 2.2e-16 88.6 74 78.4
Peaxi162Scf00017g02716 Petunia axillaris HOM05D003549 ORTHO05D004223 2.2e-16 88.6 75 73.3
Potri.017G066900 Populus trichocarpa HOM05D003549 ORTHO05D004223 2.2e-16 88.6 74 79.7
Nitab4.5_0000852g0140 Nicotiana tabacum HOM05D003549 ORTHO05D004223 3.7e-16 87.8 75 73.3
Nitab4.5_0003857g0060 Nicotiana tabacum HOM05D003549 ORTHO05D004223 3.7e-16 87.8 75 73.3
HanXRQChr16g0517241 Helianthus annuus HOM05D003549 ORTHO05D004223 4.9e-16 87.4 76 78.9
Prupe.3G282400 Prunus persica HOM05D003549 ORTHO05D004223 4.9e-16 87.4 74 79.7
TPR.G30392 Trifolium pratense HOM05D003549 ORTHO05D004223 4.9e-16 87.4 82 74.4
arahy.Tifrunner.gnm1.ann1.G4GSC6 Arachis hypogaea HOM05D003549 ORTHO05D004223 6.3e-16 87.0 74 81.1
arahy.Tifrunner.gnm1.ann1.TT1NYY Arachis hypogaea HOM05D003549 ORTHO05D004223 6.3e-16 87.0 74 81.1
THA.LOC104805767 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 6.3e-16 87.0 71 81.7
ClCG08G009420 Citrullus lanatus HOM05D003549 ORTHO05D004223 1.1e-15 86.3 74 82.4
MELO3C026538.2 Cucumis melo HOM05D003549 ORTHO05D004223 1.1e-15 86.3 74 82.4
CsaV3_6G031560 Cucumis sativus L. HOM05D003549 ORTHO05D004223 1.1e-15 86.3 74 82.4
Gohir.A07G060300 Gossypium hirsutum HOM05D003549 ORTHO05D004223 1.4e-15 85.9 74 79.7
CAN.G628.73 Capsicum annuum HOM05D003549 ORTHO05D004223 1.8e-15 85.5 75 80.0
Ciclev10017382m.g Citrus clementina HOM05D003549 ORTHO05D004223 1.8e-15 85.5 74 79.7
Dinv33505 Davidia involucrata HOM05D003549 ORTHO05D004223 1.8e-15 85.5 74 70.3
Duzib084G0774 Durio zibethinus HOM05D003549 ORTHO05D004223 1.8e-15 85.5 75 76.0
Thecc.03G009800 Theobroma cacao HOM05D003549 ORTHO05D004223 1.8e-15 85.5 75 78.7
Sed0001837 Sechium edule HOM05D003549 ORTHO05D004223 2.4e-15 85.1 74 68.9
TWI15G0885 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 2.4e-15 85.1 74 68.9
PSO832G2372 Papaver somniferum HOM05D003549 ORTHO05D004223 3.2e-15 84.7 73 71.2
Solyc06g071390.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 3.2e-15 84.7 75 80.0
Sopen06g027670 Solanum pennellii HOM05D003549 ORTHO05D004223 3.2e-15 84.7 75 80.0
PSO063G4497 Papaver somniferum HOM05D003549 ORTHO05D004223 4.1e-15 84.3 73 68.5
QL02p076964 Quercus lobata HOM05D003549 ORTHO05D004223 4.1e-15 84.3 73 69.9
PGSC0003DMG400027096 Solanum tuberosum HOM05D003549 ORTHO05D004223 5.4e-15 84.0 75 81.3
Duzib205G0517 Durio zibethinus HOM05D003549 ORTHO05D004223 7.0e-15 83.6 75 72.0
Aa31LG2G1940 Aethionema arabicum HOM05D003549 ORTHO05D004223 1.2e-14 82.8 74 73.0
SGA_v2.0_scaffold90G27958 Striga asiatica HOM05D000215 ORTHO05D003454 1.2e-14 82.8 75 68.0
Lsat_1_v5_gn_4_74920 Lactuca sativa HOM05D003549 ORTHO05D004223 1.6e-14 82.4 76 72.4
THA.LOC109116495 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 1.6e-14 82.4 74 68.9
Migut.D01775 Erythranthe guttata HOM05D003549 ORTHO05D004223 2.7e-14 81.6 75 77.3
THA.LOC104823782 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 2.7e-14 81.6 75 77.3
TWI60G0590 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 5.9e-14 80.5 74 66.2
RcHm_v2.0_Chr2g0170951 Rosa chinensis HOM05D003549 ORTHO05D004223 1.0e-13 79.7 72 73.6
SalBow2G1727 Salvia bowleyana HOM05D003549 ORTHO05D004223 1.0e-13 79.7 75 65.3
Hund03159 Selenicereus undatus HOM05D003549 ORTHO05D004223 1.0e-13 79.7 71 77.5
PGSC0003DMG400024492 Solanum tuberosum HOM05D003549 ORTHO05D004223 1.0e-13 79.7 75 69.3
FAN02G2804 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.3e-13 79.3 72 72.2
FAN05G0330 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.3e-13 79.3 72 72.2
FAN09G2996 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.3e-13 79.3 72 72.2
FAN09G4496 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.3e-13 79.3 72 72.2
Manes.14G067300 Manihot esculenta HOM05D003549 ORTHO05D004223 1.7e-13 79.0 76 76.3
Sed0023520 Sechium edule HOM05D003549 ORTHO05D004223 1.7e-13 79.0 74 75.7
Aqoxy3G00995 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 2.3e-13 78.6 76 67.1
FvH4_6g50520 Fragaria vesca HOM05D003549 ORTHO05D004223 2.9e-13 78.2 72 72.2
FAN14G1319 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.9e-13 78.2 72 72.2
Solyc03g114170.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 2.9e-13 78.2 75 68.0
COL.COLO4_34052 Corchorus olitorius HOM05D003549 ORTHO05D004223 6.6e-13 77.0 74 75.7
DCAR_021678 Daucus carota HOM05D003549 ORTHO05D004223 6.6e-13 77.0 71 77.5
Sopen03g033240 Solanum pennellii HOM05D003549 ORTHO05D004223 6.6e-13 77.0 75 66.7
ECA232G0606 Erigeron canadensis HOM05D003549 ORTHO05D004223 1.1e-12 76.3 74 67.6
Manes.06G103400 Manihot esculenta HOM05D003549 ORTHO05D004223 1.5e-12 75.9 47 87.2
Peaxi162Scf00689g00329 Petunia axillaris HOM05D003549 ORTHO05D004223 2.5e-12 75.1 75 76.0
CARHR049490 Cardamine hirsuta HOM05D003549 ORTHO05D004223 4.3e-12 74.3 74 70.3
ECA246G5096 Erigeron canadensis HOM05D003549 ORTHO05D004223 4.3e-12 74.3 65 80.0
Zm00001eb332940 Zea mays HOM05D003549 ORTHO05D004223 4.3e-12 74.3 74 67.6
Duzib068G0952 Durio zibethinus HOM05D003549 ORTHO05D004223 5.6e-12 73.9 81 69.1
PGR083G2145 Punica granatum HOM05D003549 ORTHO05D004223 5.6e-12 73.9 74 73.0
HPP92_002194 Vanilla planifolia HOM05D003549 ORTHO05D004223 5.6e-12 73.9 73 72.6
Cpa.g.sc124.38 Carica papaya HOM05D003549 ORTHO05D004223 7.3e-12 73.6 75 74.7
Cpa.g.sc1914.1 Carica papaya HOM05D003549 ORTHO05D004223 7.3e-12 73.6 46 87.0
Mapoly0025s0126 Marchantia polymorpha HOM05D003549 ORTHO05D004223 7.3e-12 73.6 65 61.5
Eucgr.K02857 Eucalyptus grandis HOM05D003549 ORTHO05D004223 9.5e-12 73.2 71 77.5
Peaxi162Scf00535g00046 Petunia axillaris HOM05D003549 ORTHO05D004223 9.5e-12 73.2 75 62.7
Sp5g19250 Schrenkiella parvula HOM05D003549 ORTHO05D004223 9.5e-12 73.2 74 68.9
CANSAT64G1109 Cannabis sativa HOM05D003549 ORTHO05D004223 1.2e-11 72.8 74 71.6
BcaB03g15337 Brassica carinata HOM05D003549 ORTHO05D004223 1.6e-11 72.4 74 63.5
Sc04g0001880 Simmondsia chinensis HOM05D003549 ORTHO05D004223 2.1e-11 72.0 72 69.4
AL2G18990 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 2.8e-11 71.6 75 73.3
Atru.chr9.2446 Acer truncatum HOM05D003549 ORTHO05D004223 4.7e-11 70.9 47 80.9
CAN.G781.29 Capsicum annuum HOM05D003549 ORTHO05D004223 6.1e-11 70.5 75 69.3
AL8G14410 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 1.0e-10 69.7 74 70.3
A07p32720 Brassica napus HOM05D003549 ORTHO05D004223 1.0e-10 69.7 70 65.7
C06p38930 Brassica napus HOM05D003549 ORTHO05D004223 1.0e-10 69.7 70 65.7
BolC6t38985H Brassica oleracea HOM05D003549 ORTHO05D004223 1.0e-10 69.7 70 65.7
BraA07t30898Z Brassica rapa HOM05D003549 ORTHO05D004223 1.0e-10 69.7 70 65.7
Hma1.2p1_0802F.1_g220520 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 1.0e-10 69.7 68 63.2
ECA247G2394 Erigeron canadensis HOM05D003549 ORTHO05D004223 1.8e-10 68.9 75 70.7
Thhalv10022469m.g Eutrema salsugineum HOM05D003549 ORTHO05D004223 1.8e-10 68.9 74 66.2
QL10p012114 Quercus lobata HOM05D003549 ORTHO05D004223 2.3e-10 68.6 128 46.9
SalBow5G5409 Salvia bowleyana HOM05D003549 ORTHO05D004223 5.2e-10 67.4 74 66.2
SMO139G0002 Selaginella moellendorffii HOM05D003549 ORTHO05D004223 5.2e-10 67.4 65 66.2
AagrBONN_evm.TU.Sc2ySwM_117.1875 Anthoceros agrestis HOM05D003549 ORTHO05D004223 8.9e-10 66.6 70 55.7
SMO145G0027 Selaginella moellendorffii HOM05D003549 ORTHO05D004223 8.9e-10 66.6 66 63.6
Sc12g0005420 Simmondsia chinensis HOM05D003549 ORTHO05D004223 1.2e-09 66.2 72 70.8
TPR.G37556 Trifolium pratense HOM05D003549 ORTHO05D004223 1.2e-09 66.2 74 70.3
Aqoxy3G00999 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 1.5e-09 65.9 74 70.3
Lalb_Chr11g0071151 Lupinus albus HOM05D003549 ORTHO05D004223 2.0e-09 65.5 74 70.3
Cfa019097 Carpinus fangiana HOM05D003549 ORTHO05D004223 2.6e-09 65.1 125 48.0
Rhsim08G0170600 Rhododendron simsii HOM05D003549 ORTHO05D004223 3.4e-09 64.7 71 59.2
Carub.0003s3029 Capsella rubella HOM05D003549 ORTHO05D004223 4.4e-09 64.3 74 70.3
Os01g0273000 Oryza sativa ssp. japonica HOM05D003549 ORTHO05D004223 7.5e-09 63.5 72 62.5
CAN.G208.13 Capsicum annuum HOM05D003549 ORTHO05D004223 9.8e-09 63.2 48 75.0
unitig_26.g9627 Utricularia gibba HOM05D000915 ORTHO05D001662 9.8e-09 63.2 73 58.9
Hma1.2p1_0967F.1_g242260 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 1.3e-08 62.8 80 52.5
ATR0752G058 Amborella trichopoda HOM05D003549 ORTHO05D004223 2.9e-08 61.6 71 64.8
CBR_g8660 Chara braunii HOM05D003549 ORTHO05D004223 2.9e-08 61.6 70 58.6
AUR62036487 Chenopodium quinoa HOM05D003549 ORTHO05D004223 2.9e-08 61.6 76 71.1
AT5G45010 Arabidopsis thaliana HOM05D003549 ORTHO05D004223 3.7e-08 61.2 74 64.9
EL10Ac5g10777 Beta vulgaris HOM05D003549 ORTHO05D004223 3.7e-08 61.2 69 71.0
DCAR_021565 Daucus carota HOM05D003549 ORTHO05D004223 3.7e-08 61.2 60 71.7
Gohir.D12G274100 Gossypium hirsutum HOM05D003549 ORTHO05D004223 6.4e-08 60.5 72 68.1
Gorai.008G294500 Gossypium raimondii HOM05D003549 ORTHO05D004223 6.4e-08 60.5 72 68.1
Lsat_1_v5_gn_1_26640 Lactuca sativa HOM05D000122 ORTHO05D004223 6.4e-08 60.5 74 67.6
A02p23950 Brassica napus HOM05D003549 ORTHO05D004223 1.4e-07 59.3 77 63.6
AUR62037088 Chenopodium quinoa HOM05D003549 ORTHO05D004223 2.4e-07 58.5 76 69.7
BcaB05g23601 Brassica carinata HOM05D003549 ORTHO05D004223 3.2e-07 58.2 68 52.9
CAN.G650.26 Capsicum annuum HOM05D003549 ORTHO05D004223 3.2e-07 58.2 48 68.8
CDE10G0156 Ceratophyllum demersum HOM05D003549 ORTHO05D004223 3.2e-07 58.2 71 63.4
HanXRQChr02g0037231 Helianthus annuus HOM05D003549 ORTHO05D004223 3.2e-07 58.2 76 64.5
HPP92_011135 Vanilla planifolia HOM05D003549 ORTHO05D004223 4.1e-07 57.8 114 45.6
Aqoxy3G02997 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 5.4e-07 57.4 66 68.2
C02p37800 Brassica napus HOM05D003549 ORTHO05D004223 2.0e-06 55.5 77 61.0
BolC2t09796H Brassica oleracea HOM05D003549 ORTHO05D004223 2.0e-06 55.5 77 49.4
AUR62008230 Chenopodium quinoa HOM05D003549 ORTHO05D004223 2.0e-06 55.5 76 67.1
AagrBONN_evm.TU.Sc2ySwM_368.737 Anthoceros agrestis HOM05D003549 ORTHO05D004223 4.6e-06 54.3 92 51.1
Gohir.D07G065000 Gossypium hirsutum HOM05D003549 ORTHO05D004223 6.0e-06 53.9 48 70.8
Gorai.001G068500 Gossypium raimondii HOM05D003549 ORTHO05D004223 6.0e-06 53.9 48 70.8


User provided reference genes

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