Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G0419 Trochodendron aralioides HOM05D004238 ORTHO05D004934 1.3e-114 416.4 213 100.0
TAR371G0763 Trochodendron aralioides HOM05D004238 ORTHO05D004934 2.1e-104 382.5 206 93.7
TAR426G0005 Trochodendron aralioides HOM05D004238 ORTHO05D004934 5.7e-81 304.7 209 78.5
TAR535G0010 Trochodendron aralioides HOM05D004238 ORTHO05D004934 5.7e-81 304.7 209 78.5
CSS0018341 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 4.1e-71 271.9 206 68.9
Dinv12220 Davidia involucrata HOM05D004238 ORTHO05D004934 4.1e-71 271.9 195 72.8
Nn4g23948 Nelumbo nucifera HOM05D004238 ORTHO05D004934 9.0e-71 270.8 205 71.7
CSS0035838 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 1.2e-70 270.4 206 68.9
Dinv28139 Davidia involucrata HOM05D004238 ORTHO05D004934 1.9e-68 263.1 184 75.5
Hma1.2p1_1283F.1_g272760 Hydrangea macrophylla HOM05D004238 ORTHO05D004934 4.6e-67 258.5 206 67.5
Peaxi162Scf00683g00158 Petunia axillaris HOM05D004238 ORTHO05D004934 1.4e-66 256.9 183 72.1
Nitab4.5_0001986g0030 Nicotiana tabacum HOM05D004238 ORTHO05D004934 3.9e-66 255.4 199 67.8
Solyc03g119200.4 Solanum lycopersicum HOM05D004238 ORTHO05D004934 1.5e-65 253.4 173 75.1
Haze_18725 Corylus avellana HOM05D004238 ORTHO05D004934 2.0e-65 253.1 203 70.0
PGSC0003DMG400005732 Solanum tuberosum HOM05D004238 ORTHO05D004934 3.3e-65 252.3 158 79.7
CiPaw.16G088800 Carya illinoinensis HOM05D004238 ORTHO05D004934 7.4e-65 251.1 191 70.2
FAN04G1535 Fragaria x ananassa HOM05D004238 ORTHO05D004934 9.7e-65 250.8 179 72.6
Lj9C425T3 Lonicera japonica HOM05D004238 ORTHO05D004934 1.3e-64 250.4 162 79.0
FvH4_5g16670 Fragaria vesca HOM05D004238 ORTHO05D004934 8.2e-64 247.7 179 73.2
FAN18G3483 Fragaria x ananassa HOM05D004238 ORTHO05D004934 8.2e-64 247.7 179 73.2
MD14G1229600 Malus domestica HOM05D004238 ORTHO05D004934 1.1e-63 247.3 204 65.7
Nitab4.5_0004028g0040 Nicotiana tabacum HOM05D004238 ORTHO05D004934 1.4e-63 246.9 204 63.2
CAN.G1129.11 Capsicum annuum HOM05D004238 ORTHO05D004934 1.8e-63 246.5 164 75.0
Lsat_1_v5_gn_8_143241 Lactuca sativa HOM05D004238 ORTHO05D004934 2.4e-63 246.1 160 78.1
DCAR_015154 Daucus carota HOM05D004238 ORTHO05D004934 3.1e-63 245.7 156 79.5
FAN13G1096 Fragaria x ananassa HOM05D004238 ORTHO05D004934 6.9e-63 244.6 179 72.1
RcHm_v2.0_Chr7g0179451 Rosa chinensis HOM05D004238 ORTHO05D004934 9.1e-63 244.2 160 77.5
Hund02354 Selenicereus undatus HOM05D004238 ORTHO05D004934 9.1e-63 244.2 212 64.6
Glyma.05G139300 Glycine max HOM05D004238 ORTHO05D004934 2.6e-62 242.7 191 66.5
Aqoxy3G00204 Aquilegia oxysepala HOM05D004238 ORTHO05D004934 4.5e-62 241.9 155 78.1
Thecc.03G040700 Theobroma cacao HOM05D004238 ORTHO05D004934 5.9e-62 241.5 198 66.2
Duzib084G0471 Durio zibethinus HOM05D004238 ORTHO05D004934 7.7e-62 241.1 159 74.8
Glyma.08G094600 Glycine max HOM05D004238 ORTHO05D004934 1.0e-61 240.7 191 67.5
Lalb_Chr13g0293671 Lupinus albus HOM05D004238 ORTHO05D004934 1.0e-61 240.7 177 70.6
GSVIVG01008335001 Vitis vinifera HOM05D004238 ORTHO05D004934 1.3e-61 240.4 162 75.3
arahy.Tifrunner.gnm1.ann1.NC6GJT Arachis hypogaea HOM05D004238 ORTHO05D004934 1.7e-61 240.0 173 72.3
VMungo0251G1679 Vigna mungo HOM05D004238 ORTHO05D004934 1.7e-61 240.0 191 67.5
arahy.Tifrunner.gnm1.ann1.KCMD1F Arachis hypogaea HOM05D004238 ORTHO05D004934 2.9e-61 239.2 173 72.3
Gohir.A07G066800 Gossypium hirsutum HOM05D004238 ORTHO05D004934 2.9e-61 239.2 203 62.1
Prupe.5G224400 Prunus persica HOM05D004238 ORTHO05D004934 2.9e-61 239.2 159 75.5
MD06G1220000 Malus domestica HOM05D004238 ORTHO05D004934 3.8e-61 238.8 159 74.2
FAN08G0774 Fragaria x ananassa HOM05D004238 ORTHO05D004934 5.0e-61 238.4 192 68.2
Lj4g0001453 Lotus japonicus HOM05D004238 ORTHO05D004934 6.5e-61 238.0 169 72.2
Cpa.g.sc3.467 Carica papaya HOM05D004238 ORTHO05D004934 1.1e-60 237.3 190 66.8
Ca_11587_v3 Cicer arietinum L. HOM05D004238 ORTHO05D004934 1.1e-60 237.3 196 66.8
Rhsim08G0130500 Rhododendron simsii HOM05D004238 ORTHO05D004934 1.9e-60 236.5 228 60.1
Rhsim08G0130600 Rhododendron simsii HOM05D004238 ORTHO05D004934 1.9e-60 236.5 228 60.1
CANSAT80G2380 Cannabis sativa HOM05D004238 ORTHO05D004934 2.5e-60 236.1 158 76.6
Cc04_g06880 Coffea canephora HOM05D004238 ORTHO05D004934 3.2e-60 235.7 153 75.2
Gohir.D07G071400 Gossypium hirsutum HOM05D004238 ORTHO05D004934 3.2e-60 235.7 203 61.6
Gorai.001G075300 Gossypium raimondii HOM05D004238 ORTHO05D004934 3.2e-60 235.7 203 61.6
TPR.G5108 Trifolium pratense HOM05D004238 ORTHO05D004934 3.2e-60 235.7 192 65.6
Migut.I00409 Erythranthe guttata HOM05D004238 ORTHO05D004934 5.5e-60 235.0 204 62.7
Phvul.002G182700 Phaseolus vulgaris HOM05D004238 ORTHO05D004934 5.5e-60 235.0 164 73.2
Psat7g083560 Pisum sativum HOM05D004238 ORTHO05D004934 5.5e-60 235.0 205 62.9
TWI15G0256 Tripterygium wilfordii HOM05D004238 ORTHO05D004934 5.5e-60 235.0 161 72.7
PSO017G2643 Papaver somniferum HOM05D004238 ORTHO05D004934 9.4e-60 234.2 209 63.2
CsaV3_1G004010 Cucumis sativus L. HOM05D004238 ORTHO05D004934 1.2e-59 233.8 166 72.3
Sed0011571 Sechium edule HOM05D004238 ORTHO05D004934 1.2e-59 233.8 162 72.8
Atru.chr9.900 Acer truncatum HOM05D004238 ORTHO05D004934 2.1e-59 233.0 152 77.0
PGR083G1292 Punica granatum HOM05D004238 ORTHO05D004934 2.1e-59 233.0 170 71.2
ECA233G1745 Erigeron canadensis HOM05D004238 ORTHO05D004934 4.7e-59 231.9 162 71.6
PSO478G0260 Papaver somniferum HOM05D004238 ORTHO05D004934 7.9e-59 231.1 218 59.2
COL.COLO4_20838 Corchorus olitorius HOM05D004238 ORTHO05D004934 1.0e-58 230.7 160 71.9
MBI09_g25158_MAGBIO Magnolia biondii HOM05D004238 ORTHO05D004934 1.0e-58 230.7 198 62.6
ClCG06G014610 Citrullus lanatus HOM05D004238 ORTHO05D004934 1.4e-58 230.3 177 67.8
MSTRG.11313 Avicennia marina HOM05D004238 ORTHO05D004934 3.0e-58 229.2 203 61.6
Potri.012G054200 Populus trichocarpa HOM05D004238 ORTHO05D004934 3.0e-58 229.2 169 70.4
MELO3C017324.2 Cucumis melo HOM05D004238 ORTHO05D004934 6.7e-58 228.0 183 66.7
Oeu000985.1 Olea europaea HOM05D004238 ORTHO05D004934 2.0e-57 226.5 186 64.5
Sc04g0003400 Simmondsia chinensis HOM05D004238 ORTHO05D004934 4.4e-57 225.3 191 63.4
ATR0807G117 Amborella trichopoda HOM05D004238 ORTHO05D004934 3.7e-56 222.2 155 72.3
Manes.02G071200 Manihot esculenta HOM05D004238 ORTHO05D004934 3.7e-56 222.2 160 69.4
Dinv34796 Davidia involucrata HOM05D004238 ORTHO05D004934 4.8e-56 221.9 159 69.8
Sabra12G0038000 Salix brachista HOM05D004238 ORTHO05D004934 8.2e-56 221.1 184 64.1
C05p47680 Brassica napus HOM05D004238 ORTHO05D004934 5.3e-55 218.4 161 68.3
BolC5t33477H Brassica oleracea HOM05D004238 ORTHO05D004934 9.1e-55 217.6 155 69.7
CDE08G0051 Ceratophyllum demersum HOM05D004238 ORTHO05D004934 9.1e-55 217.6 207 57.0
A05p31380 Brassica napus HOM05D004238 ORTHO05D004934 3.5e-54 215.7 204 57.4
BraA05t21977Z Brassica rapa HOM05D004238 ORTHO05D004934 1.0e-53 214.2 161 66.5
Carub.0003s1804 Capsella rubella HOM05D004238 ORTHO05D004934 1.0e-53 214.2 155 69.0
Ciclev10011789m.g Citrus clementina HOM05D004238 ORTHO05D004934 1.5e-52 210.3 205 58.0
Eucgr.B00825 Eucalyptus grandis HOM05D004238 ORTHO05D004934 4.2e-52 208.8 167 61.7
Thhalv10020846m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 4.2e-52 208.8 190 58.4
Atru.chr1.1618 Acer truncatum HOM05D004238 ORTHO05D004934 7.2e-52 208.0 195 56.4
DCAR_024088 Daucus carota HOM05D004238 ORTHO05D004934 9.4e-52 207.6 156 66.0
HanXRQChr17g0559411 Helianthus annuus HOM05D004238 ORTHO05D004934 2.1e-51 206.5 148 70.9
Thhalv10022164m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 4.7e-51 205.3 155 65.8
THA.LOC104820382 Tarenaya hassleriana HOM05D004238 ORTHO05D004934 4.7e-51 205.3 194 59.3
Aa31LG8G5120 Aethionema arabicum HOM05D004238 ORTHO05D004934 5.2e-50 201.8 149 67.8
Duzib138G0550 Durio zibethinus HOM05D004238 ORTHO05D004934 1.5e-49 200.3 210 54.8
HPP92_008849 Vanilla planifolia HOM05D004238 ORTHO05D004934 2.6e-49 199.5 162 63.0
DCAR_011371 Daucus carota HOM05D004238 ORTHO05D004934 3.3e-49 199.1 149 66.4
DCAR_011373 Daucus carota HOM05D004238 ORTHO05D004934 3.7e-48 195.7 156 61.5
Thecc.04G129000 Theobroma cacao HOM05D004238 ORTHO05D004934 3.7e-48 195.7 208 53.8
AL3G31500 Arabidopsis lyrata HOM05D004238 ORTHO05D004934 1.1e-47 194.1 155 63.2
AT3G18270 Arabidopsis thaliana HOM05D004238 ORTHO05D004934 2.4e-47 193.0 150 64.7
COL.COLO4_09370 Corchorus olitorius HOM05D004238 ORTHO05D004934 2.4e-47 193.0 211 53.1
Os01g0138900 Oryza sativa ssp. japonica HOM05D004238 ORTHO05D004934 1.2e-46 190.7 153 63.4
HPP92_008863 Vanilla planifolia HOM05D004238 ORTHO05D004934 1.6e-46 190.3 151 64.2
Gohir.D11G171700 Gossypium hirsutum HOM05D004238 ORTHO05D004934 5.9e-46 188.3 174 55.7
Manes.01G014900 Manihot esculenta HOM05D004238 ORTHO05D004934 3.8e-45 185.7 190 56.8
Gohir.A11G165600 Gossypium hirsutum HOM05D004238 ORTHO05D004934 5.0e-45 185.3 174 55.2
MELO3C008155.2 Cucumis melo HOM05D004238 ORTHO05D004934 4.2e-44 182.2 148 60.8
CsaV3_2G033830 Cucumis sativus L. HOM05D004238 ORTHO05D004934 1.2e-43 180.6 153 60.1
Cpa.g.sc170.33 Carica papaya HOM05D004238 ORTHO05D004934 1.4e-42 177.2 191 51.8
Psat5g132800 Pisum sativum HOM05D004238 ORTHO05D004934 1.2e-41 174.1 118 72.9
Lalb_Chr00c06g0404671 Lupinus albus HOM05D004238 ORTHO05D004934 3.4e-41 172.6 122 73.8
Sp3g16390 Schrenkiella parvula HOM05D004238 ORTHO05D004934 1.7e-40 170.2 174 54.0
ClCG11G007750 Citrullus lanatus HOM05D004238 ORTHO05D004934 8.3e-40 167.9 193 48.2
CANSAT78G0772 Cannabis sativa HOM05D004238 ORTHO05D004934 1.1e-39 167.5 211 51.2
Duzib205G0622 Durio zibethinus HOM05D004238 ORTHO05D004934 3.1e-39 166.0 160 58.8
arahy.Tifrunner.gnm1.ann1.78LW43 Arachis hypogaea HOM05D004238 ORTHO05D004934 4.1e-39 165.6 123 70.7
arahy.Tifrunner.gnm1.ann1.8NU3PL Arachis hypogaea HOM05D004238 ORTHO05D004934 7.0e-39 164.9 123 69.9
AagrBONN_evm.TU.Sc2ySwM_117.3507 Anthoceros agrestis HOM05D004238 ORTHO05D004934 7.7e-38 161.4 202 48.0
Mapoly0058s0107 Marchantia polymorpha HOM05D004238 ORTHO05D004934 7.7e-38 161.4 141 56.0
Pp3c2_34370 Physcomitrium patens HOM05D004238 ORTHO05D004934 1.0e-37 161.0 147 56.5
SMO146G0383 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 1.9e-36 156.8 147 52.4
arahy.Tifrunner.gnm1.ann1.K93WBA Arachis hypogaea HOM05D004238 ORTHO05D004934 6.1e-35 151.8 112 71.4
DCAR_011367 Daucus carota HOM05D004238 ORTHO05D004934 2.4e-31 139.8 137 51.8
SMO146G0146 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 4.1e-31 139.0 146 50.7
C05p38610 Brassica napus HOM05D004238 ORTHO05D004934 1.2e-30 137.5 101 67.3
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 6.6e-29 131.7 92 70.7
C08p35620 Brassica napus HOM05D004238 ORTHO05D004934 4.3e-28 129.0 86 70.9
Potri.015G044400 Populus trichocarpa HOM05D004238 ORTHO05D004934 5.6e-28 128.6 92 70.7
DCAR_011370 Daucus carota HOM05D004238 ORTHO05D004934 2.1e-27 126.7 115 56.5
CiPaw.15G135000 Carya illinoinensis HOM05D004238 ORTHO05D004934 2.0e-25 120.2 80 73.8
BolC5t32601H Brassica oleracea HOM05D004238 ORTHO05D004934 1.7e-24 117.1 86 66.3
BcaC08g44328 Brassica carinata HOM05D004238 ORTHO05D004934 3.9e-21 105.9 77 62.3
C06p17530 Brassica napus HOM05D004238 ORTHO05D004934 3.9e-21 105.9 77 62.3
Psat0s1333g0160 Pisum sativum HOM05D004238 ORTHO05D004934 3.9e-21 105.9 79 65.8
DCAR_011366 Daucus carota HOM05D004238 ORTHO05D004934 1.6e-19 100.5 101 54.5
arahy.Tifrunner.gnm1.ann1.QA2PAR Arachis hypogaea HOM05D004238 ORTHO05D004934 4.7e-19 99.0 71 67.6
BcaC05g27863 Brassica carinata HOM05D002270 ORTHO05D002866 4.7e-19 99.0 105 53.3
Atru.chr12.682 Acer truncatum HOM05D004238 ORTHO05D004934 8.0e-19 98.2 68 72.1
SEGI_36538 Sequoiadendron giganteum HOM05D004238 ORTHO05D004934 6.8e-18 95.1 109 51.4
BcaC04g23227 Brassica carinata HOM05D004238 ORTHO05D004934 1.1e-15 87.8 62 66.1
BcaC08g45100 Brassica carinata HOM05D004238 ORTHO05D004934 1.1e-15 87.8 62 66.1
BolC6t37880H Brassica oleracea HOM05D004238 ORTHO05D004934 1.1e-15 87.8 62 66.1
BolC9t53984H Brassica oleracea HOM05D004238 ORTHO05D004934 1.1e-15 87.8 62 66.1
DCAR_011376 Daucus carota HOM05D004238 ORTHO05D004934 1.4e-15 87.4 59 71.2
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 3.2e-15 86.3 57 75.4
BcaC06g36376 Brassica carinata HOM05D004238 ORTHO05D004934 7.0e-15 85.1 62 66.1
Eucgr.B00826 Eucalyptus grandis HOM05D004238 ORTHO05D004934 4.6e-14 82.4 105 44.8
arahy.Tifrunner.gnm1.ann1.QI3NWI Arachis hypogaea HOM05D006876 ORTHO05D008708 1.7e-13 80.5 58 65.5
BolC6t36947H Brassica oleracea HOM05D004238 ORTHO05D004934 7.3e-12 75.1 58 60.3
Nn2g15201 Nelumbo nucifera HOM05D004238 ORTHO05D004934 4.7e-11 72.4 43 79.1
PRCOL_00000826 Prasinoderma coloniale HOM05D004238 ORTHO05D004934 1.4e-10 70.9 97 41.2
Zm00001eb312660 Zea mays HOM05D004238 ORTHO05D004934 5.2e-10 68.9 76 51.3
Nn4g22334 Nelumbo nucifera HOM05D004238 ORTHO05D004934 3.4e-09 66.2 42 76.2
Zm00001eb335570 Zea mays HOM05D004238 ORTHO05D004934 3.4e-09 66.2 43 69.8
BcaB06g26914 Brassica carinata HOM05D004238 ORTHO05D004934 3.7e-08 62.8 60 55.0
BcaB06g26915 Brassica carinata HOM05D004238 ORTHO05D004934 1.9e-07 60.5 53 60.4
Zm00001eb124820 Zea mays HOM05D004238 ORTHO05D004934 5.4e-07 58.9 36 69.4
BcaC02g10475 Brassica carinata HOM05D004238 ORTHO05D004934 2.7e-06 56.6 68 44.1
arahy.Tifrunner.gnm1.ann1.DRRV3Z Arachis hypogaea HOM05D000129 ORTHO05D014893 7.8e-06 55.1 44 54.5
Zm00001eb184180 Zea mays HOM05D005051 ORTHO05D005945 7.8e-06 55.1 66 47.0


User provided reference genes

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