Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G0416 Trochodendron aralioides HOM05D007140 ORTHO05D008539 3.6e-51 205.3 163 100.0
Nn4g24045 Nelumbo nucifera HOM05D007140 ORTHO05D008539 3.3e-12 75.9 132 46.2
TAR622G0373 Trochodendron aralioides HOM05D007140 ORTHO05D008539 1.6e-11 73.6 86 52.3
MBI16_g21172_MAGBIO Magnolia biondii HOM05D007140 ORTHO05D008539 1.2e-09 67.4 87 74.7
Dinv04892 Davidia involucrata HOM05D007140 ORTHO05D008539 4.4e-09 65.5 88 75.0
Actinidia31986 Actinidia chinensis HOM05D007140 ORTHO05D008539 5.8e-09 65.1 93 63.4
CiPaw.06G014500 Carya illinoinensis HOM05D007140 ORTHO05D008539 5.8e-09 65.1 88 73.9
Gohir.D05G319100 Gossypium hirsutum HOM05D007140 ORTHO05D008539 5.8e-09 65.1 87 71.3
Gorai.009G342100 Gossypium raimondii HOM05D007140 ORTHO05D008539 5.8e-09 65.1 87 71.3
Gohir.A05G317300 Gossypium hirsutum HOM05D007140 ORTHO05D008539 7.5e-09 64.7 87 58.6
Lalb_Chr21g0308581 Lupinus albus HOM05D007140 ORTHO05D008539 1.3e-08 63.9 86 43.0
QL01p002793 Quercus lobata HOM05D007140 ORTHO05D008539 1.3e-08 63.9 86 73.3
Cc11_g09160 Coffea canephora HOM05D007140 ORTHO05D008539 2.2e-08 63.2 80 48.8
Ca_23696_v3 Cicer arietinum L. HOM05D007140 ORTHO05D008539 4.9e-08 62.0 91 40.7
COL.COLO4_06026 Corchorus olitorius HOM05D007140 ORTHO05D008539 6.4e-08 61.6 35 88.6
Duzib251G0133 Durio zibethinus HOM05D007140 ORTHO05D008539 6.4e-08 61.6 87 47.1
Sp2g12570 Schrenkiella parvula HOM05D007140 ORTHO05D008539 6.4e-08 61.6 87 46.0
Cfa015795 Carpinus fangiana HOM05D007140 ORTHO05D008539 8.3e-08 61.2 35 88.6
CiPaw.05G246200 Carya illinoinensis HOM05D007140 ORTHO05D008539 8.3e-08 61.2 35 88.6
Haze_00698 Corylus avellana HOM05D007140 ORTHO05D008539 8.3e-08 61.2 35 88.6
Hma1.2p1_0114F.1_g055420 Hydrangea macrophylla HOM05D007140 ORTHO05D008539 8.3e-08 61.2 85 45.9
MD13G1031200 Malus domestica HOM05D007140 ORTHO05D008539 1.1e-07 60.8 35 88.6
Prupe.1G320900 Prunus persica HOM05D007140 ORTHO05D008539 1.1e-07 60.8 35 88.6
PGR119G2007 Punica granatum HOM05D007140 ORTHO05D008539 1.4e-07 60.5 35 88.6
Lj3P876T20 Lonicera japonica HOM05D007140 ORTHO05D008539 1.9e-07 60.1 88 72.7
FvH4_4g26261 Fragaria vesca HOM05D007140 ORTHO05D008539 2.4e-07 59.7 35 85.7
FAN07G2347 Fragaria x ananassa HOM05D007140 ORTHO05D008539 2.4e-07 59.7 35 85.7
FAN17G0786 Fragaria x ananassa HOM05D007140 ORTHO05D008539 2.4e-07 59.7 35 85.7
FAN22G0565 Fragaria x ananassa HOM05D007140 ORTHO05D008539 2.4e-07 59.7 35 85.7
MELO3C012294.2 Cucumis melo HOM05D007140 ORTHO05D008539 3.2e-07 59.3 35 85.7
CsaV3_5G034830 Cucumis sativus L. HOM05D007140 ORTHO05D008539 3.2e-07 59.3 35 85.7
Cpa.g.sc65.99 Carica papaya HOM05D007140 ORTHO05D008539 4.1e-07 58.9 35 85.7
Eucgr.B02880 Eucalyptus grandis HOM05D007140 ORTHO05D008539 4.1e-07 58.9 35 85.7
Peaxi162Scf00205g00914 Petunia axillaris HOM05D007140 ORTHO05D008539 4.1e-07 58.9 80 45.0
TAR629G2134 Trochodendron aralioides HOM05D007140 ORTHO05D008539 4.1e-07 58.9 35 82.9
HPP92_004883 Vanilla planifolia HOM05D007140 ORTHO05D008539 4.1e-07 58.9 35 82.9
Dinv16171 Davidia involucrata HOM05D007140 ORTHO05D008539 5.4e-07 58.5 72 51.4
FAN12G1559 Fragaria x ananassa HOM05D003680 ORTHO05D004264 5.4e-07 58.5 35 82.9
RcHm_v2.0_Chr4g0433871 Rosa chinensis HOM05D007140 ORTHO05D008539 5.4e-07 58.5 35 82.9
Sed0020048 Sechium edule HOM05D007140 ORTHO05D008539 5.4e-07 58.5 35 82.9
Manes.14G110300 Manihot esculenta HOM05D007140 ORTHO05D008539 7.1e-07 58.2 87 71.3
Nitab4.5_0000350g0190 Nicotiana tabacum HOM05D007140 ORTHO05D008539 7.1e-07 58.2 76 48.7
SEGI_30462 Sequoiadendron giganteum HOM05D007140 ORTHO05D008539 7.1e-07 58.2 35 80.0
Sc04g0005790 Simmondsia chinensis HOM05D007140 ORTHO05D008539 7.1e-07 58.2 35 82.9
TWI79G1374 Tripterygium wilfordii HOM05D007140 ORTHO05D008539 7.1e-07 58.2 81 61.7
Ciclev10015782m.g Citrus clementina HOM05D007140 ORTHO05D008539 9.2e-07 57.8 35 82.9
Migut.L00827 Erythranthe guttata HOM05D045982 ORTHO05D008539 9.2e-07 57.8 35 82.9
Potri.008G126800 Populus trichocarpa HOM05D007140 ORTHO05D008539 9.2e-07 57.8 34 85.3
Sabra08G0095700 Salix brachista HOM05D007140 ORTHO05D008539 9.2e-07 57.8 35 82.9
CDE06G2249 Ceratophyllum demersum HOM05D007140 ORTHO05D008539 1.2e-06 57.4 35 82.9
CDE07G0564 Ceratophyllum demersum HOM05D007140 ORTHO05D008539 1.2e-06 57.4 35 82.9
Os01g0120700 Oryza sativa ssp. japonica HOM05D007140 ORTHO05D008539 1.2e-06 57.4 35 80.0
Rhsim09G0068700 Rhododendron simsii HOM05D067272 ORTHO05D008539 1.2e-06 57.4 35 82.9
Medtr1g108700 Medicago truncatula HOM05D007140 ORTHO05D008539 1.6e-06 57.0 35 80.0
SHI16291 Sapria himalayana HOM05D007140 ORTHO05D008539 1.6e-06 57.0 35 80.0
THA.LOC104824159 Tarenaya hassleriana HOM05D007140 ORTHO05D008539 1.6e-06 57.0 35 82.9
CAN.G1489.6 Capsicum annuum HOM05D007140 ORTHO05D008539 2.1e-06 56.6 35 82.9
Oeu004318.1 Olea europaea HOM05D007140 ORTHO05D008539 2.1e-06 56.6 35 80.0
PSO017G0369 Papaver somniferum HOM05D007140 ORTHO05D008539 2.1e-06 56.6 35 80.0
MSTRG.877 Avicennia marina HOM05D007140 ORTHO05D008539 2.7e-06 56.2 34 82.4
BcaC06g31334 Brassica carinata HOM05D007140 ORTHO05D008539 2.7e-06 56.2 35 77.1
A06p44680 Brassica napus HOM05D007140 ORTHO05D008539 2.7e-06 56.2 35 77.1
C07p31520 Brassica napus HOM05D007140 ORTHO05D008539 2.7e-06 56.2 35 77.1
BraA06t27341Z Brassica rapa HOM05D007140 ORTHO05D008539 2.7e-06 56.2 35 77.1
Glyma.10G266900 Glycine max HOM05D007140 ORTHO05D008539 2.7e-06 56.2 35 77.1
Glyma.20G123800 Glycine max HOM05D007140 ORTHO05D008539 2.7e-06 56.2 35 77.1
Psat6g222160 Pisum sativum HOM05D007140 ORTHO05D008539 2.7e-06 56.2 35 80.0
unitig_26.g10011 Utricularia gibba HOM05D007140 ORTHO05D008539 2.7e-06 56.2 35 80.0
Oeu044323.1 Olea europaea HOM05D007140 ORTHO05D008539 3.5e-06 55.8 35 77.1
PSO478G3468 Papaver somniferum HOM05D007140 ORTHO05D008539 3.5e-06 55.8 84 45.2
SalBow8G0138 Salvia bowleyana HOM05D007140 ORTHO05D008539 3.5e-06 55.8 35 77.1
SGA_v2.0_scaffold50G18534 Striga asiatica HOM05D007140 ORTHO05D008539 3.5e-06 55.8 35 82.9
Zm00001eb334820 Zea mays HOM05D007140 ORTHO05D008539 3.5e-06 55.8 34 79.4
Atru.chr11.355 Acer truncatum HOM05D007140 ORTHO05D008539 4.6e-06 55.5 35 77.1
EL10Ac6g14263 Beta vulgaris HOM05D007140 ORTHO05D008539 4.6e-06 55.5 35 74.3
CANSAT01G0870 Cannabis sativa HOM05D007140 ORTHO05D008539 4.6e-06 55.5 34 82.4
Carub.0005s0008 Capsella rubella HOM05D007140 ORTHO05D008539 4.6e-06 55.5 35 77.1
DCAR_030189 Daucus carota HOM05D007140 ORTHO05D008539 4.6e-06 55.5 34 82.4
Lj5g0023497 Lotus japonicus HOM05D007140 ORTHO05D008539 4.6e-06 55.5 35 77.1
Lalb_Chr06g0165691 Lupinus albus HOM05D007140 ORTHO05D008539 4.6e-06 55.5 78 42.3
Solyc05g008440.3 Solanum lycopersicum HOM05D007140 ORTHO05D008539 4.6e-06 55.5 35 80.0
Sopen05g004270 Solanum pennellii HOM05D007140 ORTHO05D008539 4.6e-06 55.5 35 80.0
PGSC0003DMG400030513 Solanum tuberosum HOM05D007140 ORTHO05D008539 4.6e-06 55.5 35 80.0
Zm00001eb126340 Zea mays HOM05D007140 ORTHO05D008539 4.6e-06 55.5 35 77.1
BcaC03g16993 Brassica carinata HOM05D007140 ORTHO05D008539 6.0e-06 55.1 35 77.1
C02p49020 Brassica napus HOM05D007140 ORTHO05D008539 6.0e-06 55.1 35 77.1
BolC2t10986H Brassica oleracea HOM05D007140 ORTHO05D008539 6.0e-06 55.1 35 77.1
BolC2t10996H Brassica oleracea HOM05D007140 ORTHO05D008539 6.0e-06 55.1 35 77.1
HanXRQChr15g0466201 Helianthus annuus HOM05D007140 ORTHO05D008539 6.0e-06 55.1 34 82.4
FAN12G3352 Fragaria x ananassa HOM05D007140 ORTHO05D008539 7.8e-06 54.7 32 84.4
Phvul.007G035100 Phaseolus vulgaris HOM05D007140 ORTHO05D008539 7.8e-06 54.7 35 74.3
VMungo0720G0754 Vigna mungo HOM05D007140 ORTHO05D008539 7.8e-06 54.7 35 74.3


User provided reference genes

Program Settings