Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G0358 Trochodendron aralioides HOM05D004696 ORTHO05D005645 4.0e-41 171.0 87 100.0
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 1.5e-32 142.5 104 76.0
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 4.9e-31 137.5 104 71.2
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 6.4e-31 137.1 104 71.2
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 2.1e-29 132.1 104 70.2
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 1.3e-28 129.4 104 69.2
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 5.1e-28 127.5 104 68.3
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 6.6e-28 127.1 104 67.3
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 3.3e-27 124.8 104 67.3
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 4.3e-27 124.4 117 59.8
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 2.1e-26 122.1 104 65.4
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 4.7e-26 120.9 104 64.4
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 1.4e-25 119.4 104 63.5
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 1.8e-25 119.0 104 65.4
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 1.8e-25 119.0 104 63.5
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 3.1e-25 118.2 104 63.5
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 4.0e-25 117.9 104 62.5
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 5.2e-25 117.5 104 63.5
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 5.2e-25 117.5 104 63.5
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 8.9e-25 116.7 104 62.5
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 1.2e-24 116.3 104 63.5
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 1.2e-24 116.3 104 60.6
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 2.0e-24 115.5 104 61.5
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 2.0e-24 115.5 104 61.5
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 3.4e-24 114.8 104 63.5
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 4.4e-24 114.4 111 57.7
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 7.5e-24 113.6 99 63.6
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 1.3e-23 112.8 102 62.7
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 1.3e-23 112.8 102 62.7
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 1.3e-23 112.8 101 61.4
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 1.3e-23 112.8 101 61.4
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.7e-23 112.5 102 62.7
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 2.9e-23 111.7 104 60.6
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 2.9e-23 111.7 102 61.8
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 3.7e-23 111.3 111 56.8
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 3.7e-23 111.3 104 61.5
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 4.9e-23 110.9 102 61.8
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 4.9e-23 110.9 102 61.8
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 4.9e-23 110.9 102 61.8
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 6.4e-23 110.5 104 60.6
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 6.4e-23 110.5 102 60.8
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 6.4e-23 110.5 102 61.8
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 1.1e-22 109.8 104 61.5
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 1.1e-22 109.8 113 55.8
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 1.4e-22 109.4 102 60.8
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 1.4e-22 109.4 104 59.6
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 1.9e-22 109.0 103 59.2
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 1.9e-22 109.0 104 59.6
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 1.9e-22 109.0 104 59.6
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 2.4e-22 108.6 103 58.3
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 2.4e-22 108.6 104 60.6
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 2.4e-22 108.6 104 60.6
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 2.4e-22 108.6 102 60.8
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 3.2e-22 108.2 101 61.4
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 4.1e-22 107.8 103 57.3
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 4.1e-22 107.8 103 60.2
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 5.4e-22 107.5 111 55.0
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 5.4e-22 107.5 104 58.7
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 7.1e-22 107.1 102 58.8
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 9.2e-22 106.7 104 59.6
Lj4g0014561 Lotus japonicus HOM05D004696 ORTHO05D005645 9.2e-22 106.7 100 62.0
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 9.2e-22 106.7 105 61.0
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 2.1e-21 105.5 90 64.4
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 4.6e-21 104.4 103 59.2
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 4.6e-21 104.4 101 61.4
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 6.0e-21 104.0 103 56.3
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 6.0e-21 104.0 101 56.4
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 6.0e-21 104.0 101 56.4
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 1.0e-20 103.2 103 59.2
Lj4g0016234 Lotus japonicus HOM05D004696 ORTHO05D005645 1.0e-20 103.2 96 62.5
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 1.3e-20 102.8 98 61.2
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 1.7e-20 102.4 98 60.2
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 1.7e-20 102.4 101 55.4
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 1.7e-20 102.4 99 55.6
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 2.3e-20 102.1 103 55.3
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 3.0e-20 101.7 101 57.4
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 3.0e-20 101.7 102 56.9
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 3.9e-20 101.3 102 56.9
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 3.9e-20 101.3 102 56.9
Nitab4.5_0000745g0120 Nicotiana tabacum HOM05D004696 ORTHO05D005645 5.1e-20 100.9 81 66.7
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 8.6e-20 100.1 102 55.9
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 8.6e-20 100.1 101 57.4
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 8.6e-20 100.1 101 57.4
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 8.6e-20 100.1 101 57.4
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 8.6e-20 100.1 61 80.3
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 1.1e-19 99.8 101 56.4
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 1.1e-19 99.8 88 63.6
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 1.9e-19 99.0 91 62.6
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 3.3e-19 98.2 95 55.8
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 3.3e-19 98.2 102 54.9
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 7.3e-19 97.1 85 58.8
ECA149G0001 Erigeron canadensis HOM05D004696 ORTHO05D005645 7.3e-19 97.1 95 55.8
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 7.3e-19 97.1 92 58.7
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 1.2e-18 96.3 96 57.3
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 2.8e-18 95.1 90 57.8
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 1.8e-17 92.4 84 59.5
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 2.4e-17 92.0 61 77.0
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 5.2e-17 90.9 61 75.4
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 5.2e-17 90.9 94 53.2
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 1.2e-16 89.7 61 77.0
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 2.9e-15 85.1 61 73.8
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 2.9e-15 85.1 86 55.8
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 3.8e-15 84.7 103 49.5
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 6.4e-15 84.0 59 71.2
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 2.4e-14 82.0 102 49.0
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 2.4e-14 82.0 102 51.0
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 3.2e-14 81.6 103 52.4
Zm00001eb253530 Zea mays HOM05D004696 ORTHO05D005645 1.2e-13 79.7 99 51.5
COL.COLO4_34519 Corchorus olitorius HOM05D004696 ORTHO05D005645 6.0e-13 77.4 59 66.1
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 7.8e-13 77.0 99 49.5
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 1.7e-12 75.9 103 48.5
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 2.3e-12 75.5 90 50.0
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 8.7e-12 73.6 103 45.6
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 8.7e-12 73.6 59 69.5
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 1.1e-11 73.2 103 46.6
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 1.9e-11 72.4 95 46.3
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 1.9e-11 72.4 101 45.5
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 1.9e-11 72.4 101 45.5
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 2.5e-11 72.0 101 45.5
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 2.5e-11 72.0 101 45.5
Ca_05928_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 2.5e-11 72.0 59 62.7
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 3.3e-11 71.6 103 44.7
Ca_06214_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 3.3e-11 71.6 60 61.7
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 4.3e-11 71.2 103 47.6
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 2.8e-10 68.6 103 43.7
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 8.1e-10 67.0 103 44.7
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 3.1e-09 65.1 90 45.6
Lj2g0009432 Lotus japonicus HOM05D004696 ORTHO05D005645 1.2e-08 63.2 102 47.1
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 4.4e-08 61.2 78 50.0
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 7.6e-08 60.5 103 47.6
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 3.8e-07 58.2 83 44.6
AagrBONN_evm.TU.Sc2ySwM_368.1627 Anthoceros agrestis HOM05D004696 ORTHO05D005645 4.9e-07 57.8 80 46.2
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 4.2e-06 54.7 67 50.7
QL12p004065 Quercus lobata HOM05D004696 ORTHO05D005645 7.1e-06 53.9 63 52.4
Aqoxy5G04095 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 9.3e-06 53.5 49 63.3


User provided reference genes

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