Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G0213 Trochodendron aralioides HOM05D006232 ORTHO05D007746 1.0e-147 526.9 310 100.0
Nn2g14420 Nelumbo nucifera HOM05D006232 ORTHO05D007746 2.3e-99 366.3 295 73.6
MBI12_g26899_MAGBIO Magnolia biondii HOM05D006232 ORTHO05D007746 2.0e-87 326.6 288 72.2
Aqoxy3G03779 Aquilegia oxysepala HOM05D006232 ORTHO05D007746 1.4e-85 320.5 279 59.5
Sabra02G0132400 Salix brachista HOM05D006232 ORTHO05D007746 5.2e-83 312.0 303 54.8
Gohir.A07G133100 Gossypium hirsutum HOM05D006232 ORTHO05D007746 8.8e-83 311.2 309 67.6
TWI59G0137 Tripterygium wilfordii HOM05D006232 ORTHO05D007746 1.1e-82 310.8 286 55.9
Gohir.D07G137500 Gossypium hirsutum HOM05D006232 ORTHO05D007746 2.6e-82 309.7 309 67.6
Gorai.001G149600 Gossypium raimondii HOM05D006232 ORTHO05D007746 2.6e-82 309.7 309 67.6
PSO782G2059 Papaver somniferum HOM05D006232 ORTHO05D007746 3.3e-82 309.3 282 56.0
Potri.002G182900 Populus trichocarpa HOM05D006232 ORTHO05D007746 2.2e-81 306.6 303 53.5
Potri.002G183100 Populus trichocarpa HOM05D006232 ORTHO05D007746 2.2e-81 306.6 303 59.7
Sc15g0005080 Simmondsia chinensis HOM05D006232 ORTHO05D007746 8.2e-81 304.7 302 55.3
Thecc.01G330100 Theobroma cacao HOM05D006232 ORTHO05D007746 1.4e-80 303.9 307 54.1
CSS0021551 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 1.6e-79 300.4 320 52.2
Dinv01552 Davidia involucrata HOM05D006232 ORTHO05D007746 2.6e-79 299.7 291 56.4
Sp6g01480 Schrenkiella parvula HOM05D006232 ORTHO05D007746 2.6e-79 299.7 312 54.2
CSS0047958 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 3.5e-79 299.3 320 51.9
CSS0005474 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 1.0e-78 297.7 320 51.9
Actinidia23019 Actinidia chinensis HOM05D006232 ORTHO05D007746 1.7e-78 297.0 313 51.1
Thhalv10028437m.g Eutrema salsugineum HOM05D006232 ORTHO05D007746 2.5e-77 293.1 313 54.0
Duzib138G0398 Durio zibethinus HOM05D006232 ORTHO05D007746 3.2e-77 292.7 309 54.4
Carub.0006s3563 Capsella rubella HOM05D006232 ORTHO05D007746 4.2e-77 292.4 314 52.9
CiPaw.11G045400 Carya illinoinensis HOM05D006232 ORTHO05D007746 4.2e-77 292.4 305 54.4
vmacro04311 Vaccinium macrocarpon HOM05D006232 ORTHO05D007746 4.2e-77 292.4 289 54.0
Rhsim06G0114200 Rhododendron simsii HOM05D006232 ORTHO05D007746 5.5e-77 292.0 292 54.1
Manes.07G094000 Manihot esculenta HOM05D006232 ORTHO05D007746 7.2e-77 291.6 306 52.3
THA.LOC104801339 Tarenaya hassleriana HOM05D006232 ORTHO05D007746 2.1e-76 290.0 314 51.3
AT4G01570 Arabidopsis thaliana HOM05D006232 ORTHO05D007746 3.6e-76 289.3 316 52.8
Aa31LG5G1290 Aethionema arabicum HOM05D006232 ORTHO05D007746 8.0e-76 288.1 314 52.9
CDE09G0095 Ceratophyllum demersum HOM05D006232 ORTHO05D007746 1.8e-75 287.0 299 49.2
AL6G51770 Arabidopsis lyrata HOM05D006232 ORTHO05D007746 6.7e-75 285.0 314 52.9
Haze_15770 Corylus avellana HOM05D006232 ORTHO05D007746 8.8e-75 284.6 308 54.5
CARHR250090 Cardamine hirsuta HOM05D006232 ORTHO05D007746 1.2e-74 284.3 315 60.3
DCAR_015569 Daucus carota HOM05D006232 ORTHO05D007746 2.0e-74 283.5 309 50.8
Atru.chr5.807 Acer truncatum HOM05D006232 ORTHO05D007746 2.2e-73 280.0 303 53.5
AUR62025831 Chenopodium quinoa HOM05D006232 ORTHO05D007746 2.2e-73 280.0 293 49.8
QL08p048137 Quercus lobata HOM05D006232 ORTHO05D007746 8.2e-73 278.1 308 51.3
Eucgr.A00015 Eucalyptus grandis HOM05D006232 ORTHO05D007746 2.4e-72 276.6 281 64.4
EL10Ac1g00635 Beta vulgaris HOM05D006232 ORTHO05D007746 5.3e-72 275.4 297 49.2
EL10Ac1g00638 Beta vulgaris HOM05D006232 ORTHO05D007746 1.6e-71 273.9 297 48.8
Oeu062029.1 Olea europaea HOM05D006232 ORTHO05D007746 1.1e-69 267.7 290 51.4
Cc09_g04270 Coffea canephora HOM05D006232 ORTHO05D007746 1.9e-69 266.9 287 51.6
MELO3C022296.2 Cucumis melo HOM05D006232 ORTHO05D007746 5.5e-69 265.4 313 58.5
Prupe.2G203600 Prunus persica HOM05D006232 ORTHO05D007746 5.5e-69 265.4 300 64.3
MD01G1096200 Malus domestica HOM05D006232 ORTHO05D007746 7.2e-69 265.0 302 57.6
Nitab4.5_0001677g0020 Nicotiana tabacum HOM05D006232 ORTHO05D007746 4.0e-67 259.2 296 48.3
Sopen11g004540 Solanum pennellii HOM05D006232 ORTHO05D007746 6.8e-67 258.5 296 47.0
PGSC0003DMG400016173 Solanum tuberosum HOM05D006232 ORTHO05D007746 6.8e-67 258.5 287 48.1
Solyc11g008760.3 Solanum lycopersicum HOM05D006232 ORTHO05D007746 1.2e-66 257.7 296 47.3
MSTRG.8185 Avicennia marina HOM05D006232 ORTHO05D007746 1.5e-66 257.3 291 47.8
BcaB01g02134 Brassica carinata HOM05D006232 ORTHO05D007746 1.3e-65 254.2 308 47.4
SGA_v2.0_scaffold153G36899 Striga asiatica HOM05D006232 ORTHO05D007315 1.3e-65 254.2 287 48.8
Ciclev10023806m.g Citrus clementina HOM05D006232 ORTHO05D007746 3.1e-64 249.6 265 52.8
Lalb_Chr15g0076621 Lupinus albus HOM05D006232 ORTHO05D007746 4.1e-64 249.2 292 46.9
SHI19982 Sapria himalayana HOM05D006232 ORTHO05D007746 2.7e-63 246.5 300 45.0
PGR092G0006 Punica granatum HOM05D006232 ORTHO05D007746 1.3e-62 244.2 292 62.3
BcaC04g24085 Brassica carinata HOM05D006232 ORTHO05D007746 1.7e-62 243.8 306 46.4
FvH4_7g18170 Fragaria vesca HOM05D006232 ORTHO05D007746 7.2e-61 238.4 296 55.4
FAN06G0943 Fragaria x ananassa HOM05D006232 ORTHO05D007746 7.2e-61 238.4 282 56.4
FAN06G1608 Fragaria x ananassa HOM05D006232 ORTHO05D007746 1.6e-60 237.3 282 56.4
RcHm_v2.0_Chr1g0361811 Rosa chinensis HOM05D006232 ORTHO05D007746 1.0e-59 234.6 299 59.2
FAN03G0759 Fragaria x ananassa HOM05D006232 ORTHO05D007746 4.0e-59 232.6 287 53.7
Sed0020235 Sechium edule HOM05D006232 ORTHO05D007746 2.6e-58 229.9 293 56.7
FAN10G2312 Fragaria x ananassa HOM05D006232 ORTHO05D007746 4.9e-57 225.7 287 54.4
FAN01G1185 Fragaria x ananassa HOM05D006232 ORTHO05D007746 7.0e-56 221.9 282 55.0
SGA_v2.0_scaffold83G26365 Striga asiatica HOM05D006232 ORTHO05D007746 6.6e-54 215.3 287 43.2
ClCG06G002380 Citrullus lanatus HOM05D007869 ORTHO05D009962 1.9e-53 213.8 272 58.5
A09p01130 Brassica napus HOM05D006232 ORTHO05D007746 5.6e-53 212.2 307 42.3
CAN.G691.16 Capsicum annuum HOM05D006232 ORTHO05D007746 6.1e-52 208.8 292 41.4
BolC9t53055H Brassica oleracea HOM05D006232 ORTHO05D007746 3.0e-51 206.5 268 46.3
arahy.Tifrunner.gnm1.ann1.YGP4KT Arachis hypogaea HOM05D006232 ORTHO05D007746 4.0e-51 206.1 297 43.4
C09p01210 Brassica napus HOM05D006232 ORTHO05D007746 6.8e-51 205.3 267 46.1
arahy.Tifrunner.gnm1.ann1.E4FCEH Arachis hypogaea HOM05D006232 ORTHO05D007746 1.5e-50 204.1 295 43.4
BraA09t35784Z Brassica rapa HOM05D006232 ORTHO05D007746 1.5e-50 204.1 267 44.9
Phvul.011G061000 Phaseolus vulgaris HOM05D006232 ORTHO05D007746 1.7e-49 200.7 281 42.0
Migut.F01833 Erythranthe guttata HOM05D006232 ORTHO05D007746 6.4e-49 198.7 335 37.0
VMungo1127G1689 Vigna mungo HOM05D006232 ORTHO05D007746 2.4e-48 196.8 283 41.0
SalBow8G3454 Salvia bowleyana HOM05D006232 ORTHO05D007746 3.5e-47 193.0 266 40.6
Cpa.g.sc314.5 Carica papaya HOM05D006232 ORTHO05D007746 1.3e-46 191.0 298 40.9
arahy.Tifrunner.gnm1.ann1.NHK9RM Arachis hypogaea HOM05D006232 ORTHO05D007746 8.6e-46 188.3 297 40.7
Glyma.11G135300 Glycine max HOM05D006232 ORTHO05D007746 4.7e-44 182.6 283 40.3
Nitab4.5_0000743g0190 Nicotiana tabacum HOM05D006232 ORTHO05D007746 1.3e-41 174.5 197 48.7
Lj1g0009831 Lotus japonicus HOM05D006232 ORTHO05D007746 1.7e-41 174.1 305 36.7
Hma1.2p1_0074F.1_g038910 Hydrangea macrophylla HOM05D006232 ORTHO05D007746 8.6e-38 161.8 114 66.7
TPR.G23396 Trifolium pratense HOM05D006232 ORTHO05D007746 3.3e-37 159.8 305 34.8
Medtr7g016910 Medicago truncatula HOM05D006232 ORTHO05D007746 1.8e-35 154.1 298 33.9
ATR0684G123 Amborella trichopoda HOM05D006232 ORTHO05D007746 8.9e-35 151.8 237 38.4
COL.COLO4_23076 Corchorus olitorius HOM05D006232 ORTHO05D007746 8.9e-35 151.8 131 58.0
MD01G1097600 Malus domestica HOM05D006232 ORTHO05D007746 1.2e-34 151.4 125 59.2
arahy.Tifrunner.gnm1.ann1.MJ9C76 Arachis hypogaea HOM05D006232 ORTHO05D007746 4.4e-34 149.4 140 57.1
Psat3g203240 Pisum sativum HOM05D006232 ORTHO05D007746 3.7e-33 146.4 306 35.0
Lsat_1_v5_gn_4_109581 Lactuca sativa HOM05D006232 ORTHO05D007746 5.1e-30 136.0 211 38.9
ECA247G0464 Erigeron canadensis HOM05D006232 ORTHO05D007746 2.8e-28 130.2 194 37.6
CSS0030017 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 4.7e-28 129.4 90 67.8
CsaV3_6G008430 Cucumis sativus L. HOM05D006232 ORTHO05D007746 2.4e-27 127.1 133 50.4
Peaxi162Scf00254g00041 Petunia axillaris HOM05D006232 ORTHO05D007746 2.4e-27 127.1 107 58.9
Peaxi162Scf00890g00001 Petunia axillaris HOM05D006232 ORTHO05D007746 4.9e-25 119.4 97 58.8
Ca_06909_v3 Cicer arietinum L. HOM05D006232 ORTHO05D007746 5.4e-24 115.9 90 57.8
SEGI_19483 Sequoiadendron giganteum HOM05D006232 ORTHO05D007746 2.1e-20 104.0 247 30.8
Sc02g0005770 Simmondsia chinensis HOM05D006232 ORTHO05D007746 3.6e-20 103.2 110 52.7
unitig_62.g23853 Utricularia gibba HOM05D006232 ORTHO05D007746 1.1e-19 101.7 199 33.2
unitig_64.g29781 Utricularia gibba HOM05D006232 ORTHO05D007746 1.1e-19 101.7 199 33.2
Zm00001eb055010 Zea mays HOM05D006232 ORTHO05D007746 1.9e-16 90.9 105 41.9
AL6G24740 Arabidopsis lyrata HOM05D007157 ORTHO05D009045 7.6e-10 68.9 305 22.6
Aqoxy7G01955 Aquilegia oxysepala HOM05D003900 ORTHO05D005009 9.9e-10 68.6 105 33.3
Sp6g29920 Schrenkiella parvula HOM05D007157 ORTHO05D009045 3.8e-09 66.6 234 22.2
BraA10t44501Z Brassica rapa HOM05D007157 ORTHO05D009045 6.4e-09 65.9 271 23.2
A10p24350 Brassica napus HOM05D007157 ORTHO05D009045 8.4e-09 65.5 271 23.2
C09p63050 Brassica napus HOM05D007157 ORTHO05D009045 8.4e-09 65.5 271 23.2
AT5G14080 Arabidopsis thaliana HOM05D007157 ORTHO05D009045 1.1e-08 65.1 234 22.6
CARHR199280 Cardamine hirsuta HOM05D007157 ORTHO05D009045 4.2e-08 63.2 234 22.2
Thhalv10012953m.g Eutrema salsugineum HOM05D007157 ORTHO05D009045 4.2e-08 63.2 234 21.4
BolC9t59142H Brassica oleracea HOM05D007157 ORTHO05D009045 5.4e-08 62.8 271 22.5
CDE02G4345 Ceratophyllum demersum HOM05D006080 ORTHO05D007382 7.1e-08 62.4 229 21.0
HanXRQChr14g0453291 Helianthus annuus HOM05D006596 ORTHO05D008497 1.2e-07 61.6 301 21.9
CAN.G691.7 Capsicum annuum HOM05D006232 ORTHO05D007746 3.5e-07 60.1 138 34.8
ECA238G2420 Erigeron canadensis HOM05D006596 ORTHO05D008497 3.5e-07 60.1 277 21.7
TAR629G1749 Trochodendron aralioides HOM05D007157 ORTHO05D009045 1.8e-06 57.8 250 21.2
CsaV3_3G038200 Cucumis sativus L. HOM05D006596 ORTHO05D008497 2.3e-06 57.4 258 21.3
HPP92_002274 Vanilla planifolia HOM05D006232 ORTHO05D007746 3.0e-06 57.0 75 44.0
ATR0824G150 Amborella trichopoda HOM05D002460 ORTHO05D002716 3.9e-06 56.6 82 32.9
MELO3C009563.2 Cucumis melo HOM05D006596 ORTHO05D008497 8.7e-06 55.5 258 20.9
FvH4_3g42580 Fragaria vesca HOM05D000002 ORTHO05D000001 8.7e-06 55.5 106 26.4


User provided reference genes

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