Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G0138 Trochodendron aralioides HOM05D007960 ORTHO05D010026 5.5e-62 240.7 116 100.0
Nn3g17652 Nelumbo nucifera HOM05D007960 ORTHO05D010026 4.4e-27 124.8 121 62.8
Hma1.2p1_0340F.1_g130110 Hydrangea macrophylla HOM05D007960 ORTHO05D010026 3.8e-23 111.7 113 54.0
Cc04_g07760 Coffea canephora HOM05D007960 ORTHO05D010026 2.3e-20 102.4 117 53.8
Haze_18568 Corylus avellana HOM05D007960 ORTHO05D010026 1.2e-19 100.1 107 53.3
Haze_18570 Corylus avellana HOM05D007960 ORTHO05D010026 9.7e-19 97.1 93 57.0
Cfa019847 Carpinus fangiana HOM05D007960 ORTHO05D010026 1.3e-18 96.7 121 50.4
CiPaw.15G122900 Carya illinoinensis HOM05D007960 ORTHO05D010026 4.8e-18 94.7 123 43.9
Dinv38606 Davidia involucrata HOM05D000227 ORTHO05D001491 9.1e-17 90.5 117 47.0
Medtr2g056070 Medicago truncatula HOM05D007960 ORTHO05D010026 9.1e-17 90.5 108 47.2
Psat1g027680 Pisum sativum HOM05D007960 ORTHO05D010026 9.1e-17 90.5 111 45.9
QL10p022177 Quercus lobata HOM05D007960 ORTHO05D010026 9.1e-17 90.5 126 43.7
TAR629G2447 Trochodendron aralioides HOM05D007960 ORTHO05D010026 1.6e-16 89.7 68 63.2
Lj1g0016835 Lotus japonicus HOM05D007960 ORTHO05D010026 4.5e-16 88.2 96 49.0
Nitab4.5_0004342g0110 Nicotiana tabacum HOM05D007960 ORTHO05D010026 5.9e-16 87.8 92 52.2
Solyc03g114430.1 Solanum lycopersicum HOM05D007960 ORTHO05D010026 5.9e-16 87.8 86 52.3
BcaC08g46805 Brassica carinata HOM05D007960 ORTHO05D010026 7.7e-16 87.4 105 49.5
BolC6t39852H Brassica oleracea HOM05D007960 ORTHO05D010026 7.7e-16 87.4 105 49.5
Carub.0002s2086 Capsella rubella HOM05D007960 ORTHO05D010026 7.7e-16 87.4 101 51.5
A07p39920 Brassica napus HOM05D007960 ORTHO05D010026 1.3e-15 86.7 105 49.5
BraA07t31538Z Brassica rapa HOM05D007960 ORTHO05D010026 1.3e-15 86.7 105 49.5
Atru.chr9.701 Acer truncatum HOM05D007960 ORTHO05D010026 1.7e-15 86.3 103 49.5
Peaxi162Scf00017g03010 Petunia axillaris HOM05D007960 ORTHO05D001491 1.7e-15 86.3 90 53.3
BcaC08g46834 Brassica carinata HOM05D007960 ORTHO05D010026 2.2e-15 85.9 82 53.7
CARHR067210 Cardamine hirsuta HOM05D007960 ORTHO05D010026 2.9e-15 85.5 101 49.5
Nitab4.5_0000646g0060 Nicotiana tabacum HOM05D007960 ORTHO05D010026 3.8e-15 85.1 92 52.2
Aa31LG4G4360 Aethionema arabicum HOM05D007960 ORTHO05D010026 5.0e-15 84.7 122 44.3
Ciclev10024471m.g Citrus clementina HOM05D007960 ORTHO05D010026 6.5e-15 84.3 127 42.5
C06p48150 Brassica napus HOM05D007960 ORTHO05D010026 1.5e-14 83.2 102 48.0
AL2G33950 Arabidopsis lyrata HOM05D007960 ORTHO05D010026 2.5e-14 82.4 101 49.5
Cpa.g.sc13.82 Carica papaya HOM05D007960 ORTHO05D010026 4.2e-14 81.6 91 54.9
Sp5g29280 Schrenkiella parvula HOM05D007960 ORTHO05D010026 4.2e-14 81.6 138 41.3
Sc04g0003840 Simmondsia chinensis HOM05D007960 ORTHO05D010026 4.2e-14 81.6 98 46.9
PGSC0003DMG400041876 Solanum tuberosum HOM05D007960 ORTHO05D010026 4.2e-14 81.6 72 55.6
AT1G74055 Arabidopsis thaliana HOM05D007960 ORTHO05D010026 5.5e-14 81.3 122 42.6
Thhalv10019432m.g Eutrema salsugineum HOM05D007960 ORTHO05D010026 5.5e-14 81.3 81 53.1
Lalb_Chr13g0302531 Lupinus albus HOM05D007960 ORTHO05D010026 1.6e-13 79.7 79 54.4
Sc04g0003850 Simmondsia chinensis HOM05D007960 ORTHO05D010026 1.6e-13 79.7 98 45.9
TPR.G31006 Trifolium pratense HOM05D007960 ORTHO05D010026 2.1e-13 79.3 78 52.6
Gohir.A03G074200 Gossypium hirsutum HOM05D007960 ORTHO05D010026 3.6e-13 78.6 106 43.4
Sopen03g033530 Solanum pennellii HOM05D007960 ORTHO05D010026 3.6e-13 78.6 85 48.2
Phvul.003G179700 Phaseolus vulgaris HOM05D007960 ORTHO05D010026 4.7e-13 78.2 91 50.5
PSO063G1775 Papaver somniferum HOM05D007960 ORTHO05D010026 6.1e-13 77.8 123 39.8
VMungo1215G0525 Vigna mungo HOM05D007960 ORTHO05D010026 8.0e-13 77.4 95 48.4
Manes.01G022400 Manihot esculenta HOM05D007960 ORTHO05D010026 1.0e-12 77.0 119 47.9
Glyma.17G123900 Glycine max HOM05D007960 ORTHO05D010026 1.8e-12 76.3 99 50.5
Gohir.D03G100500 Gossypium hirsutum HOM05D007960 ORTHO05D010026 1.8e-12 76.3 107 44.9
Gorai.003G106000 Gossypium raimondii HOM05D007960 ORTHO05D010026 1.8e-12 76.3 107 44.9
PSO782G5681 Papaver somniferum HOM05D007960 ORTHO05D010026 1.8e-12 76.3 101 41.6
THA.LOC104812118 Tarenaya hassleriana HOM05D007960 ORTHO05D010026 1.8e-12 76.3 96 45.8
Thecc.03G114600 Theobroma cacao HOM05D007960 ORTHO05D010026 1.8e-12 76.3 87 44.8
Ah.11g047280 Amaranthus hybridus HOM05D007960 ORTHO05D010026 6.8e-12 74.3 102 43.1
Sc04g0003950 Simmondsia chinensis HOM05D007960 ORTHO05D010026 1.5e-11 73.2 98 44.9
Ca_02635_v3 Cicer arietinum L. HOM05D007960 ORTHO05D010026 2.0e-11 72.8 76 47.4
Ca_30215_v3 Cicer arietinum L. HOM05D007960 ORTHO05D010026 2.0e-11 72.8 76 47.4
BraA07t30596Z Brassica rapa HOM05D007960 ORTHO05D010026 2.6e-11 72.4 102 43.1
FAN18G0932 Fragaria x ananassa HOM05D000227 ORTHO05D001491 2.6e-11 72.4 75 57.3
FAN13G1649 Fragaria x ananassa HOM05D000227 ORTHO05D001491 3.4e-11 72.0 75 58.7
RcHm_v2.0_Chr7g0184281 Rosa chinensis HOM05D007960 ORTHO05D010026 3.4e-11 72.0 100 52.0
ATR0730G198 Amborella trichopoda HOM05D007960 ORTHO05D010026 5.7e-11 71.2 123 41.5
Lalb_Chr12g0197501 Lupinus albus HOM05D007960 ORTHO05D010026 2.8e-10 68.9 69 58.0
Lsat_1_v5_gn_1_15660 Lactuca sativa HOM05D007960 ORTHO05D010026 3.7e-10 68.6 86 45.3
MD14G1219300 Malus domestica HOM05D007960 ORTHO05D010026 8.3e-10 67.4 109 42.2
ECA247G3950 Erigeron canadensis HOM05D007960 ORTHO05D010026 3.1e-09 65.5 84 45.2
Prupe.5G214000 Prunus persica HOM05D007960 ORTHO05D010026 4.1e-09 65.1 124 37.9
Aqoxy3G03839 Aquilegia oxysepala HOM05D007960 ORTHO05D010026 5.4e-09 64.7 118 40.7
Rhsim08G0149000 Rhododendron simsii HOM05D007960 ORTHO05D010026 7.0e-09 64.3 88 45.5
Rhsim11G0054500 Rhododendron simsii HOM05D007960 ORTHO05D010026 2.0e-08 62.8 114 39.5
Sed0018526 Sechium edule HOM05D007960 ORTHO05D010026 5.9e-08 61.2 56 57.1
ClCG04G011400 Citrullus lanatus HOM05D007960 ORTHO05D010026 1.3e-07 60.1 52 57.7
Glyma.05G015600 Glycine max HOM05D007960 ORTHO05D010026 1.3e-07 60.1 80 47.5
PGR044G2003 Punica granatum HOM05D007960 ORTHO05D010026 1.7e-07 59.7 98 36.7
Actinidia16062 Actinidia chinensis HOM05D000227 ORTHO05D001491 2.9e-07 58.9 60 53.3
HPP92_008295 Vanilla planifolia HOM05D020022 ORTHO05D010026 1.1e-06 57.0 72 44.4
ATR0730G210 Amborella trichopoda HOM05D022024 ORTHO05D009245 2.5e-06 55.8 54 51.9
BcaC08g45611 Brassica carinata HOM05D007960 ORTHO05D010026 7.2e-06 54.3 70 44.3


User provided reference genes

Program Settings