Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G0131 Trochodendron aralioides HOM05D004533 ORTHO05D005347 2.0e-137 492.7 289 100.0
TAR629G1049 Trochodendron aralioides HOM05D004533 ORTHO05D005347 3.4e-89 332.4 320 57.5
Haze_11876 Corylus avellana HOM05D004533 ORTHO05D005347 1.5e-81 307.0 318 63.8
Thecc.02G326400 Theobroma cacao HOM05D004533 ORTHO05D005347 5.9e-81 305.1 322 65.2
QL03p073504 Quercus lobata HOM05D004533 ORTHO05D005347 1.7e-80 303.5 320 64.4
Duzib251G0596 Durio zibethinus HOM05D004533 ORTHO05D005347 1.1e-79 300.8 322 64.9
Cfa008857 Carpinus fangiana HOM05D004533 ORTHO05D005347 2.7e-78 296.2 317 66.6
Duzib268G0904 Durio zibethinus HOM05D004533 ORTHO05D005347 1.1e-76 290.8 323 60.4
Manes.01G025900 Manihot esculenta HOM05D004533 ORTHO05D005347 1.5e-76 290.4 322 62.4
Manes.05G112100 Manihot esculenta HOM05D004533 ORTHO05D005347 2.2e-75 286.6 322 65.2
Gohir.D02G131100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 6.3e-75 285.0 317 59.6
CiPaw.05G123000 Carya illinoinensis HOM05D004533 ORTHO05D005347 1.4e-74 283.9 323 64.7
Gohir.A03G105900 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.2e-73 280.8 316 53.2
Gorai.005G147000 Gossypium raimondii HOM05D004533 ORTHO05D005347 2.0e-73 280.0 314 60.2
Gohir.D13G084000 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.9e-71 273.5 322 59.0
Gorai.013G095800 Gossypium raimondii HOM05D004533 ORTHO05D005347 1.9e-71 273.5 322 59.0
Duzib248G0866 Durio zibethinus HOM05D004533 ORTHO05D005347 7.2e-71 271.6 324 58.3
Gohir.A13G084500 Gossypium hirsutum HOM05D004533 ORTHO05D005347 3.6e-70 269.2 322 58.4
Nn4g23503 Nelumbo nucifera HOM05D004533 ORTHO05D005347 6.1e-70 268.5 327 61.8
Dinv20147 Davidia involucrata HOM05D004533 ORTHO05D005347 5.7e-68 261.9 310 62.3
Potri.010G154200 Populus trichocarpa HOM05D004533 ORTHO05D005347 1.3e-67 260.8 332 61.1
Lalb_Chr10g0099071 Lupinus albus HOM05D004533 ORTHO05D005347 3.1e-66 256.1 319 58.6
Potri.008G098200 Populus trichocarpa HOM05D004533 ORTHO05D005347 2.0e-65 253.4 330 61.2
Sabra10G0118800 Salix brachista HOM05D004533 ORTHO05D005347 2.0e-65 253.4 331 59.2
Lj2g0015000 Lotus japonicus HOM05D004533 ORTHO05D005347 3.8e-64 249.2 317 56.2
Lalb_Chr17g0341371 Lupinus albus HOM05D004533 ORTHO05D005347 1.5e-63 247.3 308 57.1
Phvul.003G039500 Phaseolus vulgaris HOM05D004533 ORTHO05D005347 4.2e-63 245.7 339 53.7
Ciclev10032087m.g Citrus clementina HOM05D004533 ORTHO05D005347 5.5e-63 245.4 328 61.0
Dinv34043 Davidia involucrata HOM05D004533 ORTHO05D005347 5.5e-63 245.4 291 60.1
CiPaw.06G093700 Carya illinoinensis HOM05D004533 ORTHO05D005347 5.2e-61 238.8 329 58.4
Sabra08G0074200 Salix brachista HOM05D004533 ORTHO05D005347 3.7e-59 232.6 332 59.9
Aqoxy3G03701 Aquilegia oxysepala HOM05D004533 ORTHO05D005347 8.3e-59 231.5 322 54.0
Rhsim09G0125000 Rhododendron simsii HOM05D004533 ORTHO05D005347 1.8e-58 230.3 306 58.2
COL.COLO4_27845 Corchorus olitorius HOM05D004533 ORTHO05D005347 3.1e-58 229.6 341 56.3
Medtr5g046750 Medicago truncatula HOM05D004533 ORTHO05D005347 1.2e-57 227.6 299 57.9
Cc11_g11730 Coffea canephora HOM05D004533 ORTHO05D005347 1.6e-57 227.3 313 54.0
Psat2g098360 Pisum sativum HOM05D004533 ORTHO05D005347 1.7e-56 223.8 296 54.4
Hma1.2p1_3075F.1_g332390 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 5.0e-56 222.2 330 46.1
TAR374G1471 Trochodendron aralioides HOM05D004533 ORTHO05D005347 3.2e-55 219.5 257 50.2
CSS0048067 Camellia sinensis var. sinensis HOM05D004533 ORTHO05D005347 5.5e-55 218.8 321 53.9
Cpa.g.sc1.160 Carica papaya HOM05D004533 ORTHO05D005347 1.6e-54 217.2 341 56.6
Glyma.01G063800 Glycine max HOM05D004533 ORTHO05D005347 1.0e-53 214.5 351 51.3
Gorai.008G175700 Gossypium raimondii HOM05D004533 ORTHO05D005347 2.3e-53 213.4 284 48.2
Ca_05043_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 3.0e-53 213.0 291 58.8
Ca_19594_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 3.0e-53 213.0 291 58.8
Oeu048133.1 Olea europaea HOM05D004533 ORTHO05D005347 2.8e-51 206.5 285 53.0
Oeu048134.1 Olea europaea HOM05D004533 ORTHO05D005347 2.8e-51 206.5 285 53.0
Gohir.A12G159800 Gossypium hirsutum HOM05D004533 ORTHO05D005347 3.7e-51 206.1 282 56.0
Gohir.D12G163100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 6.3e-51 205.3 281 55.5
TPR.G38582 Trifolium pratense HOM05D004533 ORTHO05D005347 4.1e-50 202.6 296 55.1
MD16G1058700 Malus domestica HOM05D004533 ORTHO05D005347 1.3e-48 197.6 325 56.6
Hma1.2p1_0473F.1_g160260 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 2.3e-48 196.8 294 42.5
Oeu028724.1 Olea europaea HOM05D004533 ORTHO05D005347 5.0e-48 195.7 296 51.7
vmacro01308 Vaccinium macrocarpon HOM05D004533 ORTHO05D005347 5.0e-48 195.7 317 47.6
Actinidia26533 Actinidia chinensis HOM05D004533 ORTHO05D005347 8.6e-48 194.9 307 53.7
Glyma.02G121400 Glycine max HOM05D004533 ORTHO05D005347 6.1e-46 188.7 358 47.8
TWI75G1153 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 1.0e-45 188.0 309 52.1
Atru.chr11.1592 Acer truncatum HOM05D004533 ORTHO05D005347 5.2e-45 185.7 328 55.2
Rhsim12G0073600 Rhododendron simsii HOM05D004533 ORTHO05D005347 8.9e-45 184.9 309 45.0
Peaxi162Scf00175g00062 Petunia axillaris HOM05D004533 ORTHO05D005347 1.2e-44 184.5 323 45.5
MD13G1059400 Malus domestica HOM05D004533 ORTHO05D005347 2.0e-44 183.7 317 56.2
Prupe.1G290400 Prunus persica HOM05D004533 ORTHO05D005347 2.0e-44 183.7 343 50.7
TWI31G0640 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 5.7e-44 182.2 303 52.1
MSTRG.13457 Avicennia marina HOM05D004533 ORTHO05D005347 3.2e-42 176.4 314 47.8
MSTRG.2297 Avicennia marina HOM05D004533 ORTHO05D005347 7.0e-42 175.3 326 40.5
TWI79G0987 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 1.6e-41 174.1 314 51.9
Hma1.2p1_0428F.1_g151070 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 3.5e-41 172.9 264 44.7
Actinidia19907 Actinidia chinensis HOM05D004533 ORTHO05D005347 7.8e-41 171.8 275 53.5
MBI16_g39936_MAGBIO Magnolia biondii HOM05D004533 ORTHO05D005347 2.9e-40 169.9 291 44.3
PSO478G4496 Papaver somniferum HOM05D004533 ORTHO05D005347 6.6e-40 168.7 342 39.2
FAN17G0049 Fragaria x ananassa HOM05D004533 ORTHO05D005347 8.6e-40 168.3 326 55.2
Oeu020361.1 Olea europaea HOM05D004533 ORTHO05D005347 1.5e-39 167.5 271 46.1
VMungo1215G1442 Vigna mungo HOM05D004533 ORTHO05D005347 3.3e-39 166.4 219 58.0
PSO017G3527 Papaver somniferum HOM05D004533 ORTHO05D005347 7.3e-39 165.2 344 40.1
Sed0020971 Sechium edule HOM05D004533 ORTHO05D005347 7.3e-39 165.2 321 39.3
FvH4_4g29630 Fragaria vesca HOM05D004533 ORTHO05D005347 9.5e-39 164.9 328 54.0
FAN12G3098 Fragaria x ananassa HOM05D004533 ORTHO05D005347 9.5e-39 164.9 328 54.0
Actinidia16147 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.2e-38 164.5 306 49.7
FAN22G0793 Fragaria x ananassa HOM05D004533 ORTHO05D005347 2.1e-38 163.7 326 53.7
FAN07G1881 Fragaria x ananassa HOM05D004533 ORTHO05D005347 6.1e-38 162.2 334 53.9
RcHm_v2.0_Chr4g0437861 Rosa chinensis HOM05D004533 ORTHO05D005347 1.4e-37 161.0 334 52.7
ClCG05G023610 Citrullus lanatus HOM05D004533 ORTHO05D005347 2.3e-37 160.2 298 45.3
ATR0827G049 Amborella trichopoda HOM05D004533 ORTHO05D005347 5.2e-37 159.1 293 47.8
arahy.Tifrunner.gnm1.ann1.NK9Z7F Arachis hypogaea HOM05D004533 ORTHO05D005347 5.2e-37 159.1 355 46.5
arahy.Tifrunner.gnm1.ann1.PV72KB Arachis hypogaea HOM05D004533 ORTHO05D005347 5.2e-37 159.1 369 45.5
Eucgr.B03139 Eucalyptus grandis HOM05D004533 ORTHO05D005347 6.8e-37 158.7 337 48.1
DCAR_023748 Daucus carota HOM05D004533 ORTHO05D005347 2.0e-36 157.1 325 43.4
MELO3C011411.2 Cucumis melo HOM05D004533 ORTHO05D005347 5.8e-36 155.6 330 38.8
ClCG08G010520 Citrullus lanatus HOM05D004533 ORTHO05D005347 9.8e-36 154.8 332 38.6
SGA_v2.0_scaffold287G47174 Striga asiatica HOM05D004533 ORTHO05D005347 1.7e-35 154.1 297 49.2
Nn3g17512 Nelumbo nucifera HOM05D004533 ORTHO05D005347 1.4e-34 151.0 301 49.8
CsaV3_6G033770 Cucumis sativus L. HOM05D004533 ORTHO05D005347 2.0e-33 147.1 334 37.7
Lsat_1_v5_gn_8_45920 Lactuca sativa HOM05D004533 ORTHO05D005347 2.0e-33 147.1 341 44.6
Solyc05g012030.1 Solanum lycopersicum HOM05D004533 ORTHO05D005347 1.3e-32 144.4 312 50.6
THA.LOC104798855 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 3.0e-32 143.3 323 48.0
THA.LOC104803161 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 3.0e-32 143.3 323 48.0
THA.LOC104822894 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 3.0e-32 143.3 323 48.0
ECA233G1177 Erigeron canadensis HOM05D004533 ORTHO05D005347 5.0e-32 142.5 333 41.7
Nitab4.5_0000027g0050 Nicotiana tabacum HOM05D004533 ORTHO05D005347 5.0e-32 142.5 309 52.4
CsaV3_5G033410 Cucumis sativus L. HOM05D004533 ORTHO05D005347 6.6e-32 142.1 283 42.0
Lsat_1_v5_gn_4_11700 Lactuca sativa HOM05D004533 ORTHO05D005347 1.1e-31 141.4 331 37.2
MSTRG.7732 Avicennia marina HOM05D004533 ORTHO05D005347 1.5e-31 141.0 317 43.8
Actinidia13399 Actinidia chinensis HOM05D004533 ORTHO05D005347 2.5e-31 140.2 191 63.9
DCAR_026684 Daucus carota HOM05D004533 ORTHO05D005347 2.5e-31 140.2 338 36.7
Lj6P776T6 Lonicera japonica HOM05D004533 ORTHO05D005347 7.3e-31 138.7 159 52.2
Nitab4.5_0006154g0010 Nicotiana tabacum HOM05D004533 ORTHO05D005347 7.3e-31 138.7 300 46.3
ECA234G4159 Erigeron canadensis HOM05D004533 ORTHO05D005347 4.7e-30 136.0 324 38.0
MELO3C012160.2 Cucumis melo HOM05D004533 ORTHO05D005347 1.1e-29 134.8 283 39.2
Sc11g0002570 Simmondsia chinensis HOM05D004533 ORTHO05D005347 1.4e-29 134.4 312 46.8
Ah.02g126770 Amaranthus hybridus HOM05D004533 ORTHO05D005347 6.8e-29 132.1 322 38.2
DCAR_030051 Daucus carota HOM05D004533 ORTHO05D005347 8.9e-29 131.7 315 44.1
HanXRQChr12g0363201 Helianthus annuus HOM05D004533 ORTHO05D005347 8.9e-29 131.7 325 43.7
THA.LOC104821996 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 2.0e-28 130.6 309 45.0
TAR381G0317 Trochodendron aralioides HOM05D004533 ORTHO05D005347 4.4e-28 129.4 104 69.2
TAR627G0820 Trochodendron aralioides HOM05D004533 ORTHO05D005347 2.2e-27 127.1 102 69.6
Sed0009680 Sechium edule HOM05D004533 ORTHO05D005347 1.2e-25 121.3 286 36.4
Sopen05g006810 Solanum pennellii HOM05D004533 ORTHO05D005347 2.7e-25 120.2 222 57.7
BraA02t06624Z Brassica rapa HOM05D004533 ORTHO05D005347 3.5e-25 119.8 333 44.4
Carub.0002s1576 Capsella rubella HOM05D004533 ORTHO05D005347 3.5e-25 119.8 318 44.0
BcaB03g15876 Brassica carinata HOM05D004533 ORTHO05D005347 1.0e-24 118.2 325 45.8
Sp5g24200 Schrenkiella parvula HOM05D004533 ORTHO05D005347 1.0e-24 118.2 308 44.2
PGSC0003DMG400028307 Solanum tuberosum HOM05D004533 ORTHO05D005347 2.3e-24 117.1 317 39.4
EL10Ac6g15027 Beta vulgaris HOM05D004533 ORTHO05D005347 3.0e-24 116.7 277 37.2
Sc04g0007440 Simmondsia chinensis HOM05D004533 ORTHO05D005347 1.5e-23 114.4 294 45.2
TAR452G0003 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.9e-23 114.0 64 89.1
Ah.03g138730 Amaranthus hybridus HOM05D004533 ORTHO05D005347 7.3e-23 112.1 329 36.2
A02p15640 Brassica napus HOM05D004533 ORTHO05D005347 7.3e-23 112.1 333 43.8
C06p40740 Brassica napus HOM05D004533 ORTHO05D005347 1.6e-22 110.9 320 44.4
BcaC08g46370 Brassica carinata HOM05D004533 ORTHO05D005347 2.1e-22 110.5 320 44.4
BolC6t39358H Brassica oleracea HOM05D004533 ORTHO05D005347 2.1e-22 110.5 320 44.4
A07p35490 Brassica napus HOM05D004533 ORTHO05D005347 2.8e-22 110.2 329 43.5
BraA07t31139Z Brassica rapa HOM05D004533 ORTHO05D005347 3.6e-22 109.8 322 43.8
BcaC03g15057 Brassica carinata HOM05D004533 ORTHO05D005347 4.7e-22 109.4 314 43.9
BolC2t08676H Brassica oleracea HOM05D004533 ORTHO05D005347 6.2e-22 109.0 318 43.7
CARHR062030 Cardamine hirsuta HOM05D004533 ORTHO05D005347 6.2e-22 109.0 322 44.1
PGR102G1315 Punica granatum HOM05D004533 ORTHO05D005347 1.1e-21 108.2 316 40.8
Thhalv10018878m.g Eutrema salsugineum HOM05D004533 ORTHO05D005347 1.4e-21 107.8 320 44.1
AL2G28250 Arabidopsis lyrata HOM05D004533 ORTHO05D005347 1.8e-21 107.5 318 43.7
C02p26000 Brassica napus HOM05D004533 ORTHO05D005347 3.1e-21 106.7 318 43.7
CANSAT64G2295 Cannabis sativa HOM05D004533 ORTHO05D005347 3.1e-21 106.7 384 40.4
AT1G69160 Arabidopsis thaliana HOM05D004533 ORTHO05D005347 1.2e-20 104.8 326 43.9
Aa31LG4G11830 Aethionema arabicum HOM05D004533 ORTHO05D005347 1.7e-19 100.9 261 51.3
PGR119G0103 Punica granatum HOM05D004533 ORTHO05D005347 6.0e-17 92.4 328 41.2
TAR629G3385 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.0e-16 91.7 137 46.7
DCAR_007202 Daucus carota HOM05D004533 ORTHO05D005347 3.9e-16 89.7 294 35.0
Migut.E00039 Erythranthe guttata HOM05D004533 ORTHO05D005347 3.9e-16 89.7 285 44.6
CDE02G4104 Ceratophyllum demersum HOM05D004533 ORTHO05D005347 4.7e-14 82.8 285 28.1
GSVIVG01012248001 Vitis vinifera HOM05D004533 ORTHO05D005347 2.6e-12 77.0 64 57.8
PSO782G4709 Papaver somniferum HOM05D004533 ORTHO05D005347 8.4e-11 72.0 318 32.1
PSO063G5982 Papaver somniferum HOM05D004533 ORTHO05D005347 2.4e-10 70.5 316 28.5
BcaC08g45911 Brassica carinata HOM05D004533 ORTHO05D005347 2.3e-08 63.9 242 38.0
CDE05G0386 Ceratophyllum demersum HOM05D004533 ORTHO05D005347 2.3e-08 63.9 102 36.3
BcaC08g45912 Brassica carinata HOM05D004533 ORTHO05D005347 3.9e-08 63.2 244 37.7
HPP92_007737 Vanilla planifolia HOM05D004533 ORTHO05D005347 9.6e-07 58.5 277 27.8
PGR142G0115 Punica granatum HOM05D001488 ORTHO05D001456 2.1e-06 57.4 215 30.7


User provided reference genes

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