Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G0118 Trochodendron aralioides HOM05D005902 ORTHO05D007182 7.7e-106 387.1 189 100.0
Nn3g18467 Nelumbo nucifera HOM05D005902 ORTHO05D007182 1.6e-98 362.8 189 90.5
Cc07_g13000 Coffea canephora HOM05D005902 ORTHO05D007182 1.2e-93 346.7 189 86.2
CSS0022144 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 1.5e-93 346.3 189 86.2
MELO3C023753.2 Cucumis melo HOM05D005902 ORTHO05D007182 1.5e-93 346.3 189 86.2
Dinv28227 Davidia involucrata HOM05D005902 ORTHO05D007182 1.5e-93 346.3 189 86.8
Ciclev10005984m.g Citrus clementina HOM05D005902 ORTHO05D007182 3.3e-93 345.1 189 85.2
ClCG05G012140 Citrullus lanatus HOM05D005902 ORTHO05D007182 4.4e-93 344.7 189 86.2
CsaV3_3G020300 Cucumis sativus L. HOM05D005902 ORTHO05D007182 4.4e-93 344.7 189 85.7
CiPaw.03G078000 Carya illinoinensis HOM05D005902 ORTHO05D007182 7.5e-93 344.0 189 86.2
Haze_14303 Corylus avellana HOM05D005902 ORTHO05D007182 3.7e-92 341.7 189 85.2
Hma1.2p1_0158F.1_g069840 Hydrangea macrophylla HOM05D005902 ORTHO05D007182 3.7e-92 341.7 188 84.0
Manes.05G062600 Manihot esculenta HOM05D005902 ORTHO05D007182 4.8e-92 341.3 189 85.2
PSO063G5475 Papaver somniferum HOM05D005902 ORTHO05D007182 4.8e-92 341.3 189 86.2
PGR031G2550 Punica granatum HOM05D005902 ORTHO05D007182 4.8e-92 341.3 189 85.2
MBI13_g21692_MAGBIO Magnolia biondii HOM05D005902 ORTHO05D007182 6.3e-92 340.9 189 85.2
RcHm_v2.0_Chr3g0493321 Rosa chinensis HOM05D005902 ORTHO05D007182 1.8e-91 339.3 189 85.2
vmacro18518 Vaccinium macrocarpon HOM05D005902 ORTHO05D007182 2.4e-91 339.0 189 83.1
Nitab4.5_0017196g0010 Nicotiana tabacum HOM05D005902 ORTHO05D007182 3.1e-91 338.6 189 84.1
TWI53G1594 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 4.1e-91 338.2 189 84.1
Cfa007771 Carpinus fangiana HOM05D005902 ORTHO05D007182 5.3e-91 337.8 189 84.7
FAN26G1601 Fragaria x ananassa HOM05D005902 ORTHO05D007182 1.2e-90 336.7 189 84.1
Lj2A514T43 Lonicera japonica HOM05D005902 ORTHO05D007182 1.2e-90 336.7 189 84.1
Rhsim08G0020200 Rhododendron simsii HOM05D005902 ORTHO05D007182 1.2e-90 336.7 189 83.1
Nitab4.5_0000905g0130 Nicotiana tabacum HOM05D005902 ORTHO05D007182 2.0e-90 335.9 189 83.6
Actinidia35717 Actinidia chinensis HOM05D005902 ORTHO05D007182 2.7e-90 335.5 189 84.7
CAN.G1464.8 Capsicum annuum HOM05D005902 ORTHO05D007182 2.7e-90 335.5 189 83.6
FAN28G1805 Fragaria x ananassa HOM05D005902 ORTHO05D007182 4.5e-90 334.7 189 83.6
GSVIVG01026316001 Vitis vinifera HOM05D005902 ORTHO05D007182 4.5e-90 334.7 191 83.8
MD17G1258000 Malus domestica HOM05D005902 ORTHO05D007182 5.9e-90 334.3 188 84.0
FAN19G0020 Fragaria x ananassa HOM05D005902 ORTHO05D007182 7.7e-90 334.0 189 83.6
Aqoxy3G04009 Aquilegia oxysepala HOM05D005902 ORTHO05D007182 1.3e-89 333.2 190 81.6
PSO782G1752 Papaver somniferum HOM05D005902 ORTHO05D007182 1.3e-89 333.2 189 84.7
Lsat_1_v5_gn_8_111480 Lactuca sativa HOM05D005902 ORTHO05D007182 2.2e-89 332.4 192 82.8
Solyc05g056560.3 Solanum lycopersicum HOM05D005902 ORTHO05D007182 2.9e-89 332.0 189 83.1
Sopen05g034960 Solanum pennellii HOM05D005902 ORTHO05D007182 2.9e-89 332.0 189 83.1
Thecc.01G244600 Theobroma cacao HOM05D005902 ORTHO05D007182 3.8e-89 331.6 189 82.5
Peaxi162Scf00525g00623 Petunia axillaris HOM05D005902 ORTHO05D007182 5.0e-89 331.3 188 83.0
Sed0000187 Sechium edule HOM05D005902 ORTHO05D007182 5.0e-89 331.3 189 82.0
arahy.Tifrunner.gnm1.ann1.YJU2T0 Arachis hypogaea HOM05D005902 ORTHO05D007182 6.5e-89 330.9 191 80.6
TWI74G1040 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 6.5e-89 330.9 189 81.5
PGSC0003DMG400023318 Solanum tuberosum HOM05D005902 ORTHO05D007182 1.1e-88 330.1 189 83.1
arahy.Tifrunner.gnm1.ann1.00Q11I Arachis hypogaea HOM05D005902 ORTHO05D007182 1.5e-88 329.7 191 80.1
CANSAT80G0886 Cannabis sativa HOM05D005902 ORTHO05D007182 1.5e-88 329.7 193 80.8
MD09G1263000 Malus domestica HOM05D005902 ORTHO05D007182 1.5e-88 329.7 189 83.1
VMungo0647G1816 Vigna mungo HOM05D005902 ORTHO05D007182 1.9e-88 329.3 190 82.6
Lalb_Chr10g0104081 Lupinus albus HOM05D005902 ORTHO05D007182 4.2e-88 328.2 194 81.4
Prupe.3G160700 Prunus persica HOM05D005902 ORTHO05D007182 5.5e-88 327.8 189 82.5
Atru.chr1.1947 Acer truncatum HOM05D005902 ORTHO05D007182 1.2e-87 326.6 189 81.5
Duzib264G0381 Durio zibethinus HOM05D005902 ORTHO05D007182 1.2e-87 326.6 189 81.5
Glyma.02G242000 Glycine max HOM05D005902 ORTHO05D007182 2.7e-87 325.5 188 81.9
Cpa.g.sc178.4 Carica papaya HOM05D005902 ORTHO05D007182 3.6e-87 325.1 189 80.4
Glyma.14G211800 Glycine max HOM05D005902 ORTHO05D007182 4.7e-87 324.7 188 81.9
ATR0598G055 Amborella trichopoda HOM05D005902 ORTHO05D007182 6.1e-87 324.3 189 83.1
HanXRQChr09g0259821 Helianthus annuus HOM05D005902 ORTHO05D007182 6.1e-87 324.3 192 81.2
MSTRG.15644 Avicennia marina HOM05D005902 ORTHO05D007182 1.0e-86 323.6 191 80.6
MSTRG.3687 Avicennia marina HOM05D005902 ORTHO05D007182 1.0e-86 323.6 191 81.2
QL02p060024 Quercus lobata HOM05D005902 ORTHO05D007182 1.0e-86 323.6 189 80.4
Duzib187G0521 Durio zibethinus HOM05D005902 ORTHO05D007182 1.4e-86 323.2 189 79.9
Oeu048966.1 Olea europaea HOM05D005902 ORTHO05D007182 1.4e-86 323.2 192 80.2
Medtr5g077260 Medicago truncatula HOM05D005902 ORTHO05D007182 2.3e-86 322.4 192 81.2
Oeu009432.1 Olea europaea HOM05D005902 ORTHO05D007182 2.3e-86 322.4 192 79.7
Phvul.008G239100 Phaseolus vulgaris HOM05D005902 ORTHO05D007182 2.3e-86 322.4 191 81.2
Potri.004G082100 Populus trichocarpa HOM05D005902 ORTHO05D007182 2.3e-86 322.4 189 78.8
Gohir.D12G002400 Gossypium hirsutum HOM05D005902 ORTHO05D007182 5.2e-86 321.2 189 79.4
Migut.K01111 Erythranthe guttata HOM05D005902 ORTHO05D007182 8.8e-86 320.5 191 79.6
LjContig00141g0001362 Lotus japonicus HOM05D005902 ORTHO05D007182 1.2e-85 320.1 192 79.2
Lalb_Chr17g0345911 Lupinus albus HOM05D005902 ORTHO05D007182 1.2e-85 320.1 194 79.9
DCAR_010066 Daucus carota HOM05D005902 ORTHO05D007182 1.5e-85 319.7 189 78.8
Psat2g044640 Pisum sativum HOM05D005902 ORTHO05D007182 2.6e-85 318.9 192 79.7
Sabra04G0054600 Salix brachista HOM05D005902 ORTHO05D007182 2.6e-85 318.9 186 79.0
TPR.G9985 Trifolium pratense HOM05D005902 ORTHO05D007182 3.4e-85 318.5 192 80.2
SGA_v2.0_scaffold45G17133 Striga asiatica HOM05D005902 ORTHO05D007182 4.4e-85 318.2 191 79.1
Ca_05775_v3 Cicer arietinum L. HOM05D005902 ORTHO05D007182 7.5e-85 317.4 192 78.6
Gohir.A12G002700 Gossypium hirsutum HOM05D005902 ORTHO05D007182 9.8e-85 317.0 189 77.8
SalBow5G2060 Salvia bowleyana HOM05D005902 ORTHO05D007182 1.3e-84 316.6 191 79.6
EL10Ac2g03874 Beta vulgaris HOM05D005902 ORTHO05D007182 1.7e-84 316.2 191 78.0
Hund03335 Selenicereus undatus HOM05D005902 ORTHO05D007182 1.7e-84 316.2 190 77.4
CDE05G1035 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 2.2e-84 315.8 189 79.9
THA.LOC104822070 Tarenaya hassleriana HOM05D005902 ORTHO05D007182 2.8e-84 315.5 192 76.6
Gorai.008G001800 Gossypium raimondii HOM05D005902 ORTHO05D007182 8.3e-84 313.9 184 79.3
BcaB05g24153 Brassica carinata HOM05D005902 ORTHO05D007182 1.1e-83 313.5 191 78.5
BraA07t30938Z Brassica rapa HOM05D005902 ORTHO05D007182 1.1e-83 313.5 191 79.1
CDE05G2622 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 1.8e-83 312.8 189 79.9
C06p39370 Brassica napus HOM05D005902 ORTHO05D007182 2.4e-83 312.4 191 78.5
Sed0027099 Sechium edule HOM05D005902 ORTHO05D007182 2.4e-83 312.4 189 82.0
AL2G23690 Arabidopsis lyrata HOM05D005902 ORTHO05D007182 4.1e-83 311.6 191 78.0
A02p13450 Brassica napus HOM05D005902 ORTHO05D007182 4.1e-83 311.6 191 78.0
BraA02t06403Z Brassica rapa HOM05D005902 ORTHO05D007182 4.1e-83 311.6 191 78.0
ECA240G4510 Erigeron canadensis HOM05D005902 ORTHO05D007182 4.1e-83 311.6 194 76.8
BcaC08g46080 Brassica carinata HOM05D005902 ORTHO05D007182 5.4e-83 311.2 191 78.0
BolC6t39030H Brassica oleracea HOM05D005902 ORTHO05D007182 5.4e-83 311.2 191 78.0
Aa31LG2G2820 Aethionema arabicum HOM05D005902 ORTHO05D007182 7.0e-83 310.8 191 77.0
A07p33100 Brassica napus HOM05D005902 ORTHO05D007182 9.1e-83 310.5 191 78.5
C02p21750 Brassica napus HOM05D005902 ORTHO05D007182 9.1e-83 310.5 191 77.5
AUR62039116 Chenopodium quinoa HOM05D005902 ORTHO05D007182 1.2e-82 310.1 189 74.1
AT1G66080 Arabidopsis thaliana HOM05D005902 ORTHO05D007182 1.6e-82 309.7 191 77.5
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 2.0e-82 309.3 188 76.6
unitig_748.g7250 Utricularia gibba HOM05D005902 ORTHO05D007182 2.0e-82 309.3 189 77.2
COL.COLO4_08161 Corchorus olitorius HOM05D005902 ORTHO05D007182 2.7e-82 308.9 178 82.6
Sc09g0004530 Simmondsia chinensis HOM05D005902 ORTHO05D007182 2.7e-82 308.9 192 76.6
AUR62009143 Chenopodium quinoa HOM05D005902 ORTHO05D007182 3.5e-82 308.5 189 74.6
BcaB03g15295 Brassica carinata HOM05D005902 ORTHO05D007182 5.9e-82 307.8 189 77.8
Carub.0002s1207 Capsella rubella HOM05D005902 ORTHO05D007182 7.7e-82 307.4 191 77.0
CARHR058040 Cardamine hirsuta HOM05D005902 ORTHO05D007182 1.3e-81 306.6 191 76.4
Thhalv10019182m.g Eutrema salsugineum HOM05D005902 ORTHO05D007182 1.3e-81 306.6 191 77.5
TAR629G3091 Trochodendron aralioides HOM05D005902 ORTHO05D007182 1.9e-80 302.8 156 95.5
SMO278G0026 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 2.1e-71 272.7 186 65.1
AagrBONN_evm.TU.Sc2ySwM_344.787 Anthoceros agrestis HOM05D005902 ORTHO05D007182 3.6e-71 271.9 191 69.1
Mapoly0006s0187 Marchantia polymorpha HOM05D005902 ORTHO05D007182 4.1e-67 258.5 189 65.1
Pp3c27_3020 Physcomitrium patens HOM05D005902 ORTHO05D007182 1.6e-66 256.5 190 64.7
CSS0046217 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 7.8e-66 254.2 147 80.3
Ah.10g034300 Amaranthus hybridus HOM05D005902 ORTHO05D007182 1.0e-65 253.8 157 76.4
Sp5g21150 Schrenkiella parvula HOM05D005902 ORTHO05D007182 3.9e-65 251.9 158 76.6
FvH4_1g28840 Fragaria vesca HOM05D005902 ORTHO05D007182 1.1e-64 250.4 146 82.9
Pp3c16_2230 Physcomitrium patens HOM05D005902 ORTHO05D007182 1.4e-62 243.4 190 61.6
Pp3c3_23430 Physcomitrium patens HOM05D005902 ORTHO05D007182 5.1e-57 224.9 183 55.2
SMO367G0342 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 1.9e-56 223.0 188 53.7
Pp3c10_12120 Physcomitrium patens HOM05D005902 ORTHO05D007182 1.6e-55 219.9 183 54.1
HPP92_002287 Vanilla planifolia HOM05D005902 ORTHO05D007182 4.4e-53 211.8 149 70.5
CBR_g54208 Chara braunii HOM05D005902 ORTHO05D007182 5.4e-51 204.9 185 55.1
CSS0023311 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 1.6e-50 203.4 179 59.2
Mapoly0001s0397 Marchantia polymorpha HOM05D005902 ORTHO05D007182 3.3e-48 195.7 186 51.1
CBR_g54207 Chara braunii HOM05D005902 ORTHO05D007182 5.6e-48 194.9 181 51.4
Os03g0237500 Oryza sativa ssp. japonica HOM05D005902 ORTHO05D007182 5.1e-41 171.8 189 51.3
Zm00001eb010060 Zea mays HOM05D005902 ORTHO05D007182 5.1e-41 171.8 189 49.2
BcaC03g14730 Brassica carinata HOM05D005902 ORTHO05D007182 1.4e-35 153.7 94 78.7
MD03G1052600 Malus domestica HOM05D005902 ORTHO05D007182 1.3e-33 147.1 91 76.9
MCO11G231 Micromonas commoda HOM05D005902 ORTHO05D007182 1.6e-26 123.6 183 36.1
MD01G1041600 Malus domestica HOM05D005902 ORTHO05D007182 4.6e-26 122.1 79 73.4
Cre16.g691215 Chlamydomonas reinhardtii HOM05D005902 ORTHO05D007182 1.3e-23 114.0 185 33.0
MD16G1261800 Malus domestica HOM05D005902 ORTHO05D007182 4.2e-19 99.0 50 90.0
CSS0027287 Camellia sinensis var. sinensis HOM05D000006 ORTHO05D000001 6.7e-09 65.1 31 93.5
PRCOL_00005463 Prasinoderma coloniale HOM05D005902 ORTHO05D007182 1.3e-07 60.8 151 27.8
BolC2t08309H Brassica oleracea HOM05D005902 ORTHO05D007182 1.8e-06 57.0 28 82.1


User provided reference genes

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