Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G0103 Trochodendron aralioides HOM05D004191 ORTHO05D004887 3.0e-102 375.2 187 100.0
MBI02_g10101_MAGBIO Magnolia biondii HOM05D004191 ORTHO05D004887 3.7e-100 368.2 187 96.3
PSO675G8300 Papaver somniferum HOM05D004191 ORTHO05D004887 8.1e-100 367.1 187 95.7
ATR0609G026 Amborella trichopoda HOM05D004191 ORTHO05D004887 1.1e-99 366.7 187 96.8
GSVIVG01002004001 Vitis vinifera HOM05D004191 ORTHO05D004887 2.4e-99 365.5 187 95.2
Aqoxy4G00334 Aquilegia oxysepala HOM05D004191 ORTHO05D004887 5.3e-99 364.4 187 95.7
TAR626G0300 Trochodendron aralioides HOM05D004191 ORTHO05D004887 6.9e-99 364.0 187 95.7
PSO170G1932 Papaver somniferum HOM05D004191 ORTHO05D004887 2.0e-98 362.5 187 94.7
ATR0109G002 Amborella trichopoda HOM05D004191 ORTHO05D004887 2.6e-98 362.1 187 96.3
CiPaw.11G184500 Carya illinoinensis HOM05D004191 ORTHO05D004887 2.6e-98 362.1 187 94.1
Thecc.05G140700 Theobroma cacao HOM05D004191 ORTHO05D004887 3.4e-98 361.7 187 94.1
Dinv40713 Davidia involucrata HOM05D004191 ORTHO05D004887 5.8e-98 360.9 187 95.2
Duzib093G1201 Durio zibethinus HOM05D004191 ORTHO05D004887 5.8e-98 360.9 187 94.1
QL08p013180 Quercus lobata HOM05D004191 ORTHO05D004887 5.8e-98 360.9 186 93.5
CiPaw.12G126500 Carya illinoinensis HOM05D004191 ORTHO05D004887 1.0e-97 360.1 187 93.0
FvH4_3g21920 Fragaria vesca HOM05D004191 ORTHO05D004887 1.7e-97 359.4 187 92.0
FAN16G1028 Fragaria x ananassa HOM05D004191 ORTHO05D004887 1.7e-97 359.4 187 92.0
RcHm_v2.0_Chr5g0037731 Rosa chinensis HOM05D004191 ORTHO05D004887 1.7e-97 359.4 187 92.0
Ciclev10009626m.g Citrus clementina HOM05D004191 ORTHO05D004887 2.2e-97 359.0 187 93.0
ECA236G4841 Erigeron canadensis HOM05D004191 ORTHO05D004887 2.2e-97 359.0 187 92.5
CSS0034391 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 2.9e-97 358.6 187 94.1
Lj1A865T18 Lonicera japonica HOM05D004191 ORTHO05D004887 2.9e-97 358.6 187 92.5
FAN21G0017 Fragaria x ananassa HOM05D004191 ORTHO05D004887 3.8e-97 358.2 187 91.4
Gohir.A09G118400 Gossypium hirsutum HOM05D004191 ORTHO05D004887 3.8e-97 358.2 187 93.0
Gohir.D09G115300 Gossypium hirsutum HOM05D004191 ORTHO05D004887 3.8e-97 358.2 187 93.0
Gorai.006G132900 Gossypium raimondii HOM05D004191 ORTHO05D004887 3.8e-97 358.2 187 93.0
Nitab4.5_0002838g0150 Nicotiana tabacum HOM05D004191 ORTHO05D004887 3.8e-97 358.2 187 93.0
Duzib106G0849 Durio zibethinus HOM05D004191 ORTHO05D004887 4.9e-97 357.8 187 93.0
FAN25G1832 Fragaria x ananassa HOM05D004191 ORTHO05D004887 4.9e-97 357.8 187 90.9
HanXRQChr02g0054141 Helianthus annuus HOM05D004191 ORTHO05D004887 4.9e-97 357.8 187 93.0
MD03G1210500 Malus domestica HOM05D004191 ORTHO05D004887 4.9e-97 357.8 187 91.4
Nitab4.5_0005420g0050 Nicotiana tabacum HOM05D004191 ORTHO05D004887 4.9e-97 357.8 187 92.5
Prupe.4G204700 Prunus persica HOM05D004191 ORTHO05D004887 4.9e-97 357.8 187 91.4
CSS0028201 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 6.5e-97 357.5 187 94.7
Solyc10g006490.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 6.5e-97 357.5 187 92.5
COL.COLO4_05062 Corchorus olitorius HOM05D004191 ORTHO05D004887 8.4e-97 357.1 187 92.5
MD11G1225200 Malus domestica HOM05D004191 ORTHO05D004887 8.4e-97 357.1 187 91.4
Cc05_g13280 Coffea canephora HOM05D004191 ORTHO05D004887 1.1e-96 356.7 187 91.4
vmacro16476 Vaccinium macrocarpon HOM05D004191 ORTHO05D004887 1.1e-96 356.7 187 92.0
Rhsim12G0150700 Rhododendron simsii HOM05D004191 ORTHO05D004887 1.4e-96 356.3 187 91.4
Lalb_Chr19g0134771 Lupinus albus HOM05D004191 ORTHO05D004887 1.9e-96 355.9 187 92.0
Potri.001G418400 Populus trichocarpa HOM05D004191 ORTHO05D004887 1.9e-96 355.9 187 92.0
Cpa.g.sc97.62 Carica papaya HOM05D004191 ORTHO05D004887 2.5e-96 355.5 187 91.4
Sabra16G0284100 Salix brachista HOM05D004191 ORTHO05D004887 2.5e-96 355.5 187 91.4
PGSC0003DMG400005405 Solanum tuberosum HOM05D004191 ORTHO05D004887 2.5e-96 355.5 187 91.4
HPP92_013205 Vanilla planifolia HOM05D001003 ORTHO05D004887 2.5e-96 355.5 186 92.5
Oeu032442.1 Olea europaea HOM05D004191 ORTHO05D004887 3.2e-96 355.1 187 91.4
arahy.Tifrunner.gnm1.ann1.HY89VY Arachis hypogaea HOM05D004191 ORTHO05D004887 4.2e-96 354.8 187 90.9
Manes.03G123300 Manihot esculenta HOM05D004191 ORTHO05D004887 4.2e-96 354.8 187 92.0
arahy.Tifrunner.gnm1.ann1.B9KZG1 Arachis hypogaea HOM05D004191 ORTHO05D004887 5.5e-96 354.4 187 90.9
Oeu007633.1 Olea europaea HOM05D004191 ORTHO05D004887 5.5e-96 354.4 196 89.3
CANSAT80G0944 Cannabis sativa HOM05D004191 ORTHO05D004887 7.1e-96 354.0 187 90.9
Lsat_1_v5_gn_7_108481 Lactuca sativa HOM05D004191 ORTHO05D004887 7.1e-96 354.0 187 91.4
Peaxi162Scf00082g00016 Petunia axillaris HOM05D004191 ORTHO05D004887 9.3e-96 353.6 187 91.4
Lj3g0027602 Lotus japonicus HOM05D004191 ORTHO05D004887 1.6e-95 352.8 187 89.8
Actinidia34670 Actinidia chinensis HOM05D004191 ORTHO05D004887 2.7e-95 352.1 187 92.5
PSO782G4612 Papaver somniferum HOM05D004191 ORTHO05D004887 2.7e-95 352.1 203 87.2
Ca_18852_v3 Cicer arietinum L. HOM05D004191 ORTHO05D004887 4.6e-95 351.3 187 90.4
Solyc01g096530.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 4.6e-95 351.3 187 90.4
SGA_v2.0_scaffold416G51230 Striga asiatica HOM05D004191 ORTHO05D004887 4.6e-95 351.3 187 89.3
THA.LOC104799884 Tarenaya hassleriana HOM05D004191 ORTHO05D004887 7.9e-95 350.5 187 90.4
CAN.G134.12 Capsicum annuum HOM05D004191 ORTHO05D004887 1.0e-94 350.1 187 89.8
FAN11G1314 Fragaria x ananassa HOM05D004191 ORTHO05D004887 1.0e-94 350.1 200 86.0
Hma1.2p1_0049F.1_g028640 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 1.0e-94 350.1 185 91.9
Eucgr.F03430 Eucalyptus grandis HOM05D004191 ORTHO05D004887 1.3e-94 349.7 182 92.9
Sopen01g040260 Solanum pennellii HOM05D004191 ORTHO05D004887 1.3e-94 349.7 187 90.4
Lalb_Chr03g0030141 Lupinus albus HOM05D004191 ORTHO05D004887 1.8e-94 349.4 187 89.3
Hund11592 Selenicereus undatus HOM05D004191 ORTHO05D004887 2.3e-94 349.0 187 89.3
AL8G30180 Arabidopsis lyrata HOM05D004191 ORTHO05D004887 3.0e-94 348.6 187 90.4
Carub.0008s1502 Capsella rubella HOM05D004191 ORTHO05D004887 3.0e-94 348.6 187 89.8
CAN.G1110.10 Capsicum annuum HOM05D004191 ORTHO05D004887 3.0e-94 348.6 201 86.6
SalBow7G2717 Salvia bowleyana HOM05D004191 ORTHO05D004887 3.0e-94 348.6 187 88.8
PGR031G0276 Punica granatum HOM05D004191 ORTHO05D004887 3.9e-94 348.2 184 91.3
Thhalv10019192m.g Eutrema salsugineum HOM05D004191 ORTHO05D004887 6.7e-94 347.4 187 89.3
Phvul.011G139700 Phaseolus vulgaris HOM05D004191 ORTHO05D004887 6.7e-94 347.4 187 89.8
AT5G54750 Arabidopsis thaliana HOM05D004191 ORTHO05D004887 8.7e-94 347.1 187 89.3
SpUn0117_0020 Schrenkiella parvula HOM05D004191 ORTHO05D004887 1.1e-93 346.7 187 89.3
CARHR268090 Cardamine hirsuta HOM05D004191 ORTHO05D004887 1.5e-93 346.3 187 88.8
VMungo1127G0852 Vigna mungo HOM05D004191 ORTHO05D004887 1.5e-93 346.3 187 88.8
Ah.02g116780 Amaranthus hybridus HOM05D004191 ORTHO05D004887 2.5e-93 345.5 187 87.7
BcaB07g31034 Brassica carinata HOM05D004191 ORTHO05D004887 2.5e-93 345.5 187 88.8
A09p20070 Brassica napus HOM05D004191 ORTHO05D004887 2.5e-93 345.5 187 88.8
C09p25460 Brassica napus HOM05D004191 ORTHO05D004887 2.5e-93 345.5 187 88.8
BraA09t37620Z Brassica rapa HOM05D004191 ORTHO05D004887 2.5e-93 345.5 187 88.8
MSTRG.6892 Avicennia marina HOM05D004191 ORTHO05D004887 3.3e-93 345.1 187 88.2
Glyma.06G269400 Glycine max HOM05D004191 ORTHO05D004887 3.3e-93 345.1 187 88.8
Glyma.12G135200 Glycine max HOM05D004191 ORTHO05D004887 3.3e-93 345.1 187 88.8
Medtr4g081170 Medicago truncatula HOM05D004191 ORTHO05D004887 4.3e-93 344.7 187 88.8
Aa31LG3G10650 Aethionema arabicum HOM05D004191 ORTHO05D004887 5.7e-93 344.4 187 88.2
Sed0000628 Sechium edule HOM05D004191 ORTHO05D004887 5.7e-93 344.4 187 88.2
Sopen10g002440 Solanum pennellii HOM05D004191 ORTHO05D004887 5.7e-93 344.4 206 83.5
Zm00001eb067130 Zea mays HOM05D004191 ORTHO05D004887 5.7e-93 344.4 185 89.2
Sp4g10480 Schrenkiella parvula HOM05D004191 ORTHO05D004887 7.4e-93 344.0 187 88.2
TPR.G25893 Trifolium pratense HOM05D004191 ORTHO05D004887 7.4e-93 344.0 187 88.8
TWI39G0061 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 7.4e-93 344.0 187 88.2
Zm00001eb433090 Zea mays HOM05D004191 ORTHO05D004887 7.4e-93 344.0 185 88.6
TPR.G24299 Trifolium pratense HOM05D004191 ORTHO05D004887 1.3e-92 343.2 186 88.7
CDE02G0163 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 2.8e-92 342.0 187 87.2
MELO3C018102.2 Cucumis melo HOM05D004191 ORTHO05D004887 3.7e-92 341.7 187 88.2
CsaV3_3G023130 Cucumis sativus L. HOM05D004191 ORTHO05D004887 3.7e-92 341.7 187 88.2
Migut.H01854 Erythranthe guttata HOM05D004191 ORTHO05D004887 3.7e-92 341.7 187 86.6
Os03g0402000 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 3.7e-92 341.7 188 88.3
Os07g0642300 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 3.7e-92 341.7 188 88.3
EL10Ac5g13057 Beta vulgaris HOM05D004191 ORTHO05D004887 8.2e-92 340.5 187 85.6
Eucgr.F00980 Eucalyptus grandis HOM05D004191 ORTHO05D004887 1.1e-91 340.1 187 86.6
MSTRG.12958 Avicennia marina HOM05D004191 ORTHO05D004887 1.4e-91 339.7 187 87.2
Sc15g0001730 Simmondsia chinensis HOM05D004191 ORTHO05D004887 1.4e-91 339.7 187 87.7
Sc22g0000820 Simmondsia chinensis HOM05D004191 ORTHO05D004887 1.4e-91 339.7 187 86.6
PGR083G1136 Punica granatum HOM05D004191 ORTHO05D004887 1.8e-91 339.3 193 86.5
SGA_v2.0_scaffold24G10288 Striga asiatica HOM05D004191 ORTHO05D004887 2.4e-91 339.0 187 85.6
Migut.M01809 Erythranthe guttata HOM05D004191 ORTHO05D004887 1.2e-90 336.7 181 87.8
Medtr8g027700 Medicago truncatula HOM05D004191 ORTHO05D004887 1.2e-90 336.7 187 86.6
arahy.Tifrunner.gnm1.ann1.T6DWBF Arachis hypogaea HOM05D004191 ORTHO05D004887 2.0e-90 335.9 187 86.1
Sed0012224 Sechium edule HOM05D004191 ORTHO05D004887 4.5e-90 334.7 187 85.6
BolC9t55449H Brassica oleracea HOM05D004191 ORTHO05D004887 5.8e-90 334.3 206 81.1
unitig_0.g2386 Utricularia gibba HOM05D004191 ORTHO05D004887 5.0e-89 331.3 183 88.0
TWI38G1569 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 2.5e-88 328.9 208 78.8
Manes.15G076000 Manihot esculenta HOM05D004191 ORTHO05D004887 6.1e-87 324.3 186 82.8
Nn1g08677 Nelumbo nucifera HOM05D004191 ORTHO05D004887 7.9e-87 323.9 167 94.0
Mapoly0006s0106 Marchantia polymorpha HOM05D004191 ORTHO05D004887 3.0e-86 322.0 185 83.8
Lsat_1_v5_gn_5_5821 Lactuca sativa HOM05D004191 ORTHO05D004887 3.9e-86 321.6 173 88.4
Hund24114 Selenicereus undatus HOM05D004191 ORTHO05D004887 6.7e-86 320.9 211 77.3
ClCG05G014740 Citrullus lanatus HOM05D004191 ORTHO05D004887 1.5e-85 319.7 241 68.9
SMO165G0074 Selaginella moellendorffii HOM05D004191 ORTHO05D004887 2.4e-83 312.4 187 79.7
AagrBONN_evm.TU.Sc2ySwM_344.5600 Anthoceros agrestis HOM05D004191 ORTHO05D004887 1.5e-82 309.7 187 79.1
AagrBONN_evm.TU.Sc2ySwM_344.5601 Anthoceros agrestis HOM05D004191 ORTHO05D004887 1.5e-82 309.7 187 79.1
Eucgr.F00978 Eucalyptus grandis HOM05D004191 ORTHO05D004887 2.6e-82 308.9 169 87.0
AagrBONN_evm.TU.Sc2ySwM_362.1587 Anthoceros agrestis HOM05D004191 ORTHO05D004887 2.9e-81 305.4 187 78.1
CBR_g9060 Chara braunii HOM05D004191 ORTHO05D004887 1.9e-80 302.8 187 78.6
Peaxi162Scf01434g00020 Petunia axillaris HOM05D004191 ORTHO05D004887 9.4e-80 300.4 187 81.3
Nitab4.5_0002342g0090 Nicotiana tabacum HOM05D004191 ORTHO05D004887 1.2e-79 300.1 187 80.2
AagrBONN_evm.TU.Sc2ySwM_344.5599 Anthoceros agrestis HOM05D004191 ORTHO05D004887 1.4e-78 296.6 172 80.8
Nitab4.5_0002229g0200 Nicotiana tabacum HOM05D004191 ORTHO05D004887 3.0e-78 295.4 187 79.7
BcaB07g30600 Brassica carinata HOM05D004191 ORTHO05D004887 1.3e-76 290.0 186 79.0
Hma1.2p1_0774F.1_g216345 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 1.7e-76 289.7 158 89.9
Pp3c6_29730 Physcomitrium patens HOM05D004191 ORTHO05D004887 3.7e-76 288.5 186 75.3
Dinv22301 Davidia involucrata HOM05D004191 ORTHO05D004887 6.3e-76 287.7 149 94.6
BcaC04g21960 Brassica carinata HOM05D004191 ORTHO05D004887 1.1e-75 287.0 154 89.6
arahy.Tifrunner.gnm1.ann1.N3PQ25 Arachis hypogaea HOM05D004191 ORTHO05D004887 9.1e-75 283.9 187 75.4
Peaxi162Scf01475g00001 Petunia axillaris HOM05D004191 ORTHO05D004887 1.6e-71 273.1 187 75.4
Cpa.g.sc2.173 Carica papaya HOM05D004191 ORTHO05D004887 7.9e-71 270.8 214 62.1
AUR62039960 Chenopodium quinoa HOM05D004191 ORTHO05D004887 3.9e-70 268.5 148 85.1
AUR62007507 Chenopodium quinoa HOM05D004191 ORTHO05D004887 7.0e-67 257.7 158 77.8
Peaxi162Scf08257g00003 Petunia axillaris HOM05D004191 ORTHO05D004887 3.2e-64 248.8 187 70.1
Cre03.g145607 Chlamydomonas reinhardtii HOM05D004191 ORTHO05D004887 1.0e-62 243.8 172 64.5
PGSC0003DMG400029125 Solanum tuberosum HOM05D004191 ORTHO05D004887 1.4e-62 243.4 187 66.8
Sp2g07630 Schrenkiella parvula HOM05D004191 ORTHO05D004887 5.9e-58 228.0 124 88.7
AagrBONN_evm.TU.Sc2ySwM_362.1580 Anthoceros agrestis HOM05D004191 ORTHO05D004887 1.0e-54 217.2 133 78.2
Cfa020410 Carpinus fangiana HOM05D004191 ORTHO05D004887 1.8e-51 206.5 103 94.2
PRCOL_00004686 Prasinoderma coloniale HOM05D004191 ORTHO05D004887 4.1e-51 205.3 167 56.3
MCO14G457 Micromonas commoda HOM05D004191 ORTHO05D004887 8.5e-49 197.6 175 54.9
COL.COLO4_37956 Corchorus olitorius HOM05D004191 ORTHO05D004887 2.5e-48 196.1 98 91.8
CDE05G2537 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 9.4e-48 194.1 107 87.9
Psat7g161320 Pisum sativum HOM05D004191 ORTHO05D004887 1.0e-46 190.7 139 67.6
SEGI_28528 Sequoiadendron giganteum HOM05D004191 ORTHO05D004887 6.8e-46 188.0 98 88.8
AUR62030012 Chenopodium quinoa HOM05D004191 ORTHO05D004887 2.0e-45 186.4 181 57.5
TWI38G1856 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 3.4e-45 185.7 103 82.5
Nn5g28123 Nelumbo nucifera HOM05D004191 ORTHO05D004887 1.4e-38 163.7 85 95.3
HanXRQChr11g0332951 Helianthus annuus HOM05D004191 ORTHO05D004887 3.1e-30 136.0 142 56.3
Pp3c2_32190 Physcomitrium patens HOM05D004191 ORTHO05D004887 5.8e-21 105.1 68 69.1
COL.COLO4_37955 Corchorus olitorius HOM05D004191 ORTHO05D004887 2.1e-18 96.7 52 92.3
Cfa020409 Carpinus fangiana HOM05D004191 ORTHO05D004887 2.7e-18 96.3 52 88.5
Haze_09622 Corylus avellana HOM05D004191 ORTHO05D004887 7.3e-16 88.2 49 85.7
Haze_09618 Corylus avellana HOM05D004191 ORTHO05D004887 8.9e-14 81.3 45 84.4
Actinidia19733 Actinidia chinensis HOM05D004191 ORTHO05D004887 1.2e-13 80.9 41 90.2
Medtr4g027400 Medicago truncatula HOM05D004191 ORTHO05D004887 4.4e-13 79.0 47 78.7
Ah.07g199550 Amaranthus hybridus HOM05D004191 ORTHO05D004887 2.2e-12 76.6 41 85.4
Ah.12g056770 Amaranthus hybridus HOM05D004191 ORTHO05D004887 2.2e-12 76.6 68 55.9
Rhsim01G0090000 Rhododendron simsii HOM05D004191 ORTHO05D004887 2.9e-12 76.3 70 61.4
Ah.07g199480 Amaranthus hybridus HOM05D004191 ORTHO05D060174 1.9e-11 73.6 39 82.1


User provided reference genes

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