Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G0091 Trochodendron aralioides HOM05D001551 ORTHO05D005859 2.3e-156 555.4 262 100.0
TAR629G2635 Trochodendron aralioides HOM05D001551 ORTHO05D005859 4.9e-143 511.1 264 91.3
Thecc.03G141800 Theobroma cacao HOM05D001551 ORTHO05D005859 3.4e-136 488.4 260 87.3
Atru.chr6.1937 Acer truncatum HOM05D001551 ORTHO05D005859 9.2e-134 480.3 263 83.7
PSO017G1738 Papaver somniferum HOM05D001551 ORTHO05D005859 3.5e-133 478.4 264 84.5
Glyma.04G202400 Glycine max HOM05D001551 ORTHO05D005859 1.3e-132 476.5 267 83.1
PSO478G5149 Papaver somniferum HOM05D001551 ORTHO05D005859 1.7e-132 476.1 264 84.1
GSVIVG01008663001 Vitis vinifera HOM05D001551 ORTHO05D005859 3.9e-132 474.9 268 84.3
Gohir.A11G038800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.1e-131 473.4 260 85.0
Phvul.009G160500 Phaseolus vulgaris HOM05D001551 ORTHO05D005859 1.1e-131 473.4 264 81.1
Gohir.D11G042000 Gossypium hirsutum HOM05D001551 ORTHO05D005859 2.5e-131 472.2 260 84.6
Duzib205G1491 Durio zibethinus HOM05D001551 ORTHO05D005859 3.3e-131 471.9 260 84.6
Hma1.2p1_0577F.1_g182180 Hydrangea macrophylla HOM05D001551 ORTHO05D005859 4.3e-131 471.5 255 86.7
Potri.012G109800 Populus trichocarpa HOM05D001551 ORTHO05D005859 4.3e-131 471.5 258 84.5
CSS0002484 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 7.3e-131 470.7 263 82.1
Lj1g0018460 Lotus japonicus HOM05D001551 ORTHO05D005859 7.3e-131 470.7 261 82.4
Manes.14G043800 Manihot esculenta HOM05D001551 ORTHO05D005859 9.6e-131 470.3 264 83.0
CSS0038575 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.6e-130 469.5 266 81.6
TWI23G1313 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 1.6e-130 469.5 271 82.7
Lj9C488G12 Lonicera japonica HOM05D001551 ORTHO05D005859 2.8e-130 468.8 265 82.6
Glyma.06G163100 Glycine max HOM05D001551 ORTHO05D005859 6.2e-130 467.6 265 81.5
Sabra12G0080000 Salix brachista HOM05D001551 ORTHO05D005859 6.2e-130 467.6 260 83.5
Cpa.g.sc2215.3 Carica papaya HOM05D001551 ORTHO05D005859 1.1e-129 466.8 268 81.7
Gohir.A03G055800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.4e-129 466.5 264 83.0
Aqoxy5G03068 Aquilegia oxysepala HOM05D001551 ORTHO05D005859 1.8e-129 466.1 264 81.4
COL.COLO4_37269 Corchorus olitorius HOM05D001551 ORTHO05D005859 3.1e-129 465.3 262 81.7
Gorai.007G045200 Gossypium raimondii HOM05D001551 ORTHO05D005859 4.0e-129 464.9 261 83.9
Ca_10874_v3 Cicer arietinum L. HOM05D001551 ORTHO05D005859 5.3e-129 464.5 261 80.8
QL10p000300 Quercus lobata HOM05D001551 ORTHO05D005859 1.2e-128 463.4 253 83.4
Cc04_g05770 Coffea canephora HOM05D001551 ORTHO05D005859 3.4e-128 461.8 259 81.5
Solyc06g068760.3 Solanum lycopersicum HOM05D001551 ORTHO05D005859 9.9e-128 460.3 258 82.6
Cfa018920 Carpinus fangiana HOM05D001551 ORTHO05D005859 3.8e-127 458.4 264 80.7
Cfa018698 Carpinus fangiana HOM05D001551 ORTHO05D005859 8.4e-127 457.2 264 81.4
MSTRG.22814 Avicennia marina HOM05D001551 ORTHO05D005859 1.9e-126 456.1 265 80.4
Gorai.003G117100 Gossypium raimondii HOM05D001551 ORTHO05D005859 1.9e-126 456.1 263 81.7
Lsat_1_v5_gn_5_9381 Lactuca sativa HOM05D001551 ORTHO05D005859 1.9e-126 456.1 264 81.8
Sopen06g026040 Solanum pennellii HOM05D001551 ORTHO05D005859 2.4e-126 455.7 259 82.2
Lalb_Chr08g0237601 Lupinus albus HOM05D001551 ORTHO05D005859 7.1e-126 454.1 265 78.5
SalBow7G1162 Salvia bowleyana HOM05D001551 ORTHO05D005859 7.1e-126 454.1 261 81.2
Medtr3g098510 Medicago truncatula HOM05D001551 ORTHO05D005859 9.3e-126 453.8 260 79.2
RcHm_v2.0_Chr7g0188531 Rosa chinensis HOM05D001551 ORTHO05D005859 1.2e-125 453.4 260 80.8
PGSC0003DMG400025575 Solanum tuberosum HOM05D001551 ORTHO05D005859 1.2e-125 453.4 259 81.9
Rhsim12G0181300 Rhododendron simsii HOM05D001551 ORTHO05D005859 2.1e-125 452.6 269 80.3
MD14G1145900 Malus domestica HOM05D001551 ORTHO05D005859 2.7e-125 452.2 263 80.2
Manes.06G127400 Manihot esculenta HOM05D001551 ORTHO05D005859 4.6e-125 451.4 264 81.8
Prupe.5G140300 Prunus persica HOM05D001551 ORTHO05D005859 4.6e-125 451.4 263 79.8
MD06G1129000 Malus domestica HOM05D001551 ORTHO05D005859 6.0e-125 451.1 263 79.8
arahy.Tifrunner.gnm1.ann1.D8JD58 Arachis hypogaea HOM05D001551 ORTHO05D005859 7.8e-125 450.7 264 78.4
arahy.Tifrunner.gnm1.ann1.Q2CTBB Arachis hypogaea HOM05D001551 ORTHO05D005859 7.8e-125 450.7 264 78.4
MELO3C002387.2 Cucumis melo HOM05D001551 ORTHO05D005859 1.0e-124 450.3 266 78.2
Actinidia36846 Actinidia chinensis HOM05D001551 ORTHO05D005859 1.7e-124 449.5 267 79.4
CsaV3_1G009930 Cucumis sativus L. HOM05D001551 ORTHO05D005859 3.9e-124 448.4 266 77.8
CAN.G1089.16 Capsicum annuum HOM05D001551 ORTHO05D005859 6.6e-124 447.6 274 78.5
Ciclev10032408m.g Citrus clementina HOM05D001551 ORTHO05D005859 8.7e-124 447.2 271 79.0
HanXRQChr05g0155371 Helianthus annuus HOM05D001551 ORTHO05D005859 1.9e-123 446.0 262 81.3
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 4.3e-123 444.9 257 80.2
Migut.I00664 Erythranthe guttata HOM05D001551 ORTHO05D005859 4.3e-123 444.9 257 80.5
PGR044G0460 Punica granatum HOM05D001551 ORTHO05D005859 4.3e-123 444.9 261 78.5
CiPaw.12G000400 Carya illinoinensis HOM05D001551 ORTHO05D005859 9.6e-123 443.7 253 80.6
Nitab4.5_0007345g0100 Nicotiana tabacum HOM05D001551 ORTHO05D005859 1.3e-122 443.4 259 81.1
Actinidia08913 Actinidia chinensis HOM05D001551 ORTHO05D005859 2.8e-122 442.2 269 77.0
BraA01t01589Z Brassica rapa HOM05D001551 ORTHO05D005859 3.6e-122 441.8 272 76.8
Sc04g0000180 Simmondsia chinensis HOM05D001551 ORTHO05D005859 3.6e-122 441.8 276 73.9
FAN04G0171 Fragaria x ananassa HOM05D001551 ORTHO05D005859 4.8e-122 441.4 271 77.5
Nitab4.5_0012775g0030 Nicotiana tabacum HOM05D001551 ORTHO05D005859 4.8e-122 441.4 259 80.7
vmacro16761 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 4.8e-122 441.4 273 78.8
Eucgr.K02189 Eucalyptus grandis HOM05D001551 ORTHO05D005859 6.2e-122 441.0 264 76.9
Rhsim08G0198700 Rhododendron simsii HOM05D001551 ORTHO05D005859 8.1e-122 440.7 247 80.2
A01p16340 Brassica napus HOM05D001551 ORTHO05D005859 1.1e-121 440.3 272 76.5
FvH4_5g09710 Fragaria vesca HOM05D001551 ORTHO05D005859 1.1e-121 440.3 271 77.1
FAN08G3006 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.4e-121 439.9 257 79.8
BcaNung03998 Brassica carinata HOM05D001551 ORTHO05D005859 1.8e-121 439.5 272 76.5
C01p20490 Brassica napus HOM05D001551 ORTHO05D005859 2.4e-121 439.1 272 76.1
BcaC09g50811 Brassica carinata HOM05D001551 ORTHO05D005859 3.1e-121 438.7 271 76.0
FAN13G0525 Fragaria x ananassa HOM05D001551 ORTHO05D005859 4.0e-121 438.3 257 79.8
FAN18G2118 Fragaria x ananassa HOM05D001551 ORTHO05D005859 5.3e-121 438.0 271 76.8
Psat5g055440 Pisum sativum HOM05D001551 ORTHO05D005859 1.2e-120 436.8 261 75.5
Gohir.D03G110700 Gossypium hirsutum HOM05D001551 ORTHO05D005859 4.5e-120 434.9 236 84.3
BolC1t01980H Brassica oleracea HOM05D001551 ORTHO05D005859 5.8e-120 434.5 272 75.7
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 8.4e-119 430.6 261 77.4
Sed0027340 Sechium edule HOM05D001551 ORTHO05D005859 1.1e-118 430.3 255 76.9
AT5G51020 Arabidopsis thaliana HOM05D001551 ORTHO05D005859 1.4e-118 429.9 260 77.3
Aa31LG3G7480 Aethionema arabicum HOM05D001551 ORTHO05D005859 2.4e-118 429.1 267 75.7
AL8G25230 Arabidopsis lyrata HOM05D001551 ORTHO05D005859 4.2e-118 428.3 260 76.9
unitig_27.g25103 Utricularia gibba HOM05D001551 ORTHO05D005859 1.6e-117 426.4 264 75.4
THA.LOC104808046 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 3.5e-117 425.2 256 77.0
CARHR257170 Cardamine hirsuta HOM05D001551 ORTHO05D005859 7.9e-117 424.1 260 76.5
Sp6g13170 Schrenkiella parvula HOM05D001551 ORTHO05D005859 7.9e-117 424.1 267 74.5
EL10Ac5g11272 Beta vulgaris HOM05D001551 ORTHO05D005859 1.8e-116 422.9 267 75.3
TWI39G0428 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 2.3e-116 422.5 258 77.5
BraA03t10931Z Brassica rapa HOM05D001551 ORTHO05D005859 5.1e-116 421.4 266 74.1
Carub.0008s1102 Capsella rubella HOM05D001551 ORTHO05D005859 5.1e-116 421.4 260 75.4
Oeu051186.2 Olea europaea HOM05D001551 ORTHO05D005859 1.6e-114 416.4 277 71.1
Hund10026 Selenicereus undatus HOM05D001551 ORTHO05D005859 2.1e-114 416.0 256 74.2
SGA_v2.0_scaffold5G02806 Striga asiatica HOM05D001551 ORTHO05D005859 4.8e-114 414.8 263 74.9
Sp7g23070 Schrenkiella parvula HOM05D001551 ORTHO05D005859 6.2e-114 414.5 272 72.8
vmacro19115 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 8.1e-114 414.1 247 76.1
Peaxi162Scf00207g00254 Petunia axillaris HOM05D001551 ORTHO05D005859 1.5e-112 409.8 259 77.6
THA.LOC104811554 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 4.5e-112 408.3 241 75.9
Sed0019000 Sechium edule HOM05D001551 ORTHO05D005859 2.2e-111 406.0 255 74.1
DCAR_025640 Daucus carota HOM05D001551 ORTHO05D005859 2.9e-111 405.6 263 73.0
AUR62043378 Chenopodium quinoa HOM05D001551 ORTHO05D005859 3.8e-111 405.2 282 68.1
A03p16410 Brassica napus HOM05D001551 ORTHO05D005859 6.4e-111 404.4 291 67.4
AUR62032208 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.9e-110 402.9 280 68.6
MBI07_g13940_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 7.9e-109 397.5 297 68.7
BcaC01g06112 Brassica carinata HOM05D001551 ORTHO05D005859 3.9e-108 395.2 270 71.9
ClCG03G004050 Citrullus lanatus HOM05D001551 ORTHO05D005859 1.1e-107 393.7 223 79.8
Dinv13710 Davidia involucrata HOM05D001551 ORTHO05D005859 5.6e-107 391.3 209 85.2
Actinidia18288 Actinidia chinensis HOM05D001551 ORTHO05D005859 2.8e-106 389.0 261 72.4
SGA_v2.0_scaffold37G14673 Striga asiatica HOM05D001551 ORTHO05D005859 3.7e-106 388.7 219 81.3
Os11g0524300 Oryza sativa ssp. japonica HOM05D001551 ORTHO05D005859 4.8e-106 388.3 231 74.5
AagrBONN_evm.TU.Sc2ySwM_368.1985 Anthoceros agrestis HOM05D001551 ORTHO05D005859 1.5e-104 383.3 235 70.6
Zm00001eb170550 Zea mays HOM05D001551 ORTHO05D005859 4.9e-103 378.3 231 72.3
Mapoly0002s0145 Marchantia polymorpha HOM05D001551 ORTHO05D005859 8.4e-103 377.5 227 73.1
Thhalv10014437m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 4.2e-102 375.2 217 79.3
Nn4g22121 Nelumbo nucifera HOM05D001551 ORTHO05D005859 6.7e-100 367.9 264 69.3
Pp3c6_23000 Physcomitrium patens HOM05D001551 ORTHO05D005859 1.6e-98 363.2 218 71.6
Pp3c5_10130 Physcomitrium patens HOM05D001551 ORTHO05D005859 1.4e-97 360.1 230 67.4
SMO118G0459 Selaginella moellendorffii HOM05D001551 ORTHO05D005859 9.0e-97 357.5 217 70.5
Actinidia25511 Actinidia chinensis HOM05D001551 ORTHO05D005859 2.2e-95 352.8 250 68.4
TPR.G16934 Trifolium pratense HOM05D001551 ORTHO05D005859 9.4e-94 347.4 193 80.8
AUR62011939 Chenopodium quinoa HOM05D001551 ORTHO05D005859 4.1e-89 332.0 299 57.5
Haze_07088 Corylus avellana HOM05D001551 ORTHO05D005859 4.1e-89 332.0 231 68.8
Nn3g16260 Nelumbo nucifera HOM05D001551 ORTHO05D005859 4.1e-89 332.0 162 90.7
Hund02515 Selenicereus undatus HOM05D001551 ORTHO05D005859 1.1e-86 323.9 275 60.7
Dinv23235 Davidia involucrata HOM05D001551 ORTHO05D005859 3.9e-84 315.5 181 81.8
AUR62043863 Chenopodium quinoa HOM05D001551 ORTHO05D005859 5.7e-83 311.6 329 50.5
CBR_g30803 Chara braunii HOM05D001551 ORTHO05D005859 6.3e-82 308.1 216 59.3
SEGI_34423 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 5.9e-80 301.6 198 65.7
Duzib084G0881 Durio zibethinus HOM05D001551 ORTHO05D005859 4.7e-77 292.0 162 83.3
Thhalv10025970m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 8.0e-69 264.6 157 78.3
MBI07_g35983_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 8.3e-66 254.6 163 76.1
CDE06G0746 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 3.5e-64 249.2 214 61.7
MBI07_g48061_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 1.0e-63 247.7 139 80.6
HPP92_009738 Vanilla planifolia HOM05D001551 ORTHO05D005859 2.7e-61 239.6 196 61.2
Sc04g0000140 Simmondsia chinensis HOM05D001551 ORTHO05D005859 7.2e-54 214.9 125 77.6
Sc04g0000130 Simmondsia chinensis HOM05D001551 ORTHO05D005859 2.6e-51 206.5 120 77.5
CSS0038626 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 5.2e-36 155.6 104 76.0
CSS0016811 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 2.2e-26 123.6 82 72.0
Psat3g122800 Pisum sativum HOM05D001551 ORTHO05D005859 8.3e-26 121.7 81 69.1
SEGI_13041 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 3.2e-25 119.8 68 70.6
FvH4_6g04500 Fragaria vesca HOM05D001551 ORTHO05D005859 9.2e-25 118.2 72 73.6
ECA246G1749 Erigeron canadensis HOM05D001551 ORTHO05D005859 3.5e-24 116.3 66 81.8
Pp3c16_270 Physcomitrium patens HOM05D001551 ORTHO05D005859 2.1e-21 107.1 65 69.2
Psat7g261640 Pisum sativum HOM05D001551 ORTHO05D005859 1.8e-20 104.0 91 58.2
Cfa013473 Carpinus fangiana HOM05D001551 ORTHO05D005859 4.4e-19 99.4 71 71.8
HanXRQChr05g0130591 Helianthus annuus HOM05D001551 ORTHO05D005859 7.6e-19 98.6 52 82.7
BcaC01g06064 Brassica carinata HOM05D001551 ORTHO05D005859 2.3e-15 87.0 82 56.1
Sabra15G0128500 Salix brachista HOM05D001551 ORTHO05D003058 6.6e-15 85.5 83 53.0
Duzib084G0670 Durio zibethinus HOM05D001551 ORTHO05D005859 7.3e-14 82.0 56 73.2
C03p19300 Brassica napus HOM05D001551 ORTHO05D042173 2.1e-13 80.5 43 76.7
Ah.02g114530 Amaranthus hybridus HOM05D001551 ORTHO05D005859 2.6e-11 73.6 96 41.7
Ah.11g046990 Amaranthus hybridus HOM05D001551 ORTHO05D005859 3.4e-11 73.2 56 62.5
Psat5g306440 Pisum sativum HOM05D001551 ORTHO05D006558 9.9e-11 71.6 52 63.5
SEGI_34327 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 1.4e-09 67.8 67 50.7
BolC3t14316H Brassica oleracea HOM05D001551 ORTHO05D042173 3.9e-07 59.7 49 55.1


User provided reference genes

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