Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G0034 Trochodendron aralioides HOM05D006304 ORTHO05D008584 0.0e+00 1948.3 968 100.0
TAR629G0077 Trochodendron aralioides HOM05D006304 ORTHO05D008584 0.0e+00 1514.2 1055 75.1
Nn3g17140 Nelumbo nucifera HOM05D006304 ORTHO05D008584 1.2e-292 1010.0 1095 53.9
Dinv38671 Davidia involucrata HOM05D006304 ORTHO05D008584 1.8e-238 830.1 987 51.3
Cfa018983 Carpinus fangiana HOM05D006304 ORTHO05D008584 1.0e-222 777.7 995 48.8
MBI12_g19403_MAGBIO Magnolia biondii HOM05D006304 ORTHO05D008584 4.8e-220 768.8 1125 45.4
Actinidia34979 Actinidia chinensis HOM05D006304 ORTHO05D008584 1.8e-214 750.4 1015 48.5
Prupe.5G187100 Prunus persica HOM05D006304 ORTHO05D008584 7.0e-211 738.4 969 46.5
GSVIVG01008051001 Vitis vinifera HOM05D006304 ORTHO05D008584 7.0e-211 738.4 975 46.6
Lj5A115T69 Lonicera japonica HOM05D006304 ORTHO05D008584 1.6e-207 727.2 1050 46.9
Rhsim12G0159100 Rhododendron simsii HOM05D006304 ORTHO05D008584 1.2e-202 711.1 1019 46.3
Haze_07372 Corylus avellana HOM05D006304 ORTHO05D008584 3.6e-199 699.5 989 46.0
vmacro16566 Vaccinium macrocarpon HOM05D006304 ORTHO05D008584 9.8e-197 691.4 1064 44.5
Cpa.g.sc17.206 Carica papaya HOM05D006304 ORTHO05D008584 1.1e-195 688.0 972 46.4
CiPaw.11G039300 Carya illinoinensis HOM05D006304 ORTHO05D008584 1.1e-195 688.0 809 50.9
Actinidia19056 Actinidia chinensis HOM05D006304 ORTHO05D008584 1.5e-192 677.6 1024 44.6
MD14G1195600 Malus domestica HOM05D006304 ORTHO05D008584 4.4e-189 666.0 974 44.1
CsaV3_1G007890 Cucumis sativus L. HOM05D006304 ORTHO05D008584 8.0e-183 645.2 987 43.2
MD06G1188800 Malus domestica HOM05D006304 ORTHO05D008584 8.0e-183 645.2 978 43.4
AUR62021733 Chenopodium quinoa HOM05D006304 ORTHO05D008584 5.2e-182 642.5 1002 43.1
Hund09367 Selenicereus undatus HOM05D006304 ORTHO05D008584 5.7e-181 639.0 1001 42.7
Aqoxy3G00750 Aquilegia oxysepala HOM05D006304 ORTHO05D008584 3.7e-180 636.3 982 44.0
AUR62008366 Chenopodium quinoa HOM05D006304 ORTHO05D008584 1.8e-179 634.0 998 42.6
MELO3C002204.2 Cucumis melo HOM05D006304 ORTHO05D008584 3.0e-177 626.7 989 42.9
RcHm_v2.0_Chr7g0180671 Rosa chinensis HOM05D006304 ORTHO05D008584 1.2e-175 621.3 983 42.9
Sc10g0009990 Simmondsia chinensis HOM05D006304 ORTHO05D008584 6.8e-174 615.5 987 43.7
Ah.11g048730 Amaranthus hybridus HOM05D006304 ORTHO05D008584 4.6e-170 602.8 999 42.5
CANSAT80G1066 Cannabis sativa HOM05D006304 ORTHO05D008584 1.1e-166 591.7 528 62.9
EL10Ac5g10949 Beta vulgaris HOM05D006304 ORTHO05D008584 3.1e-166 590.1 1012 40.8
FvH4_5g15410 Fragaria vesca HOM05D006304 ORTHO05D008584 3.1e-166 590.1 550 60.0
Glyma.17G097500 Glycine max HOM05D006304 ORTHO05D008584 1.7e-164 584.3 451 66.7
Sopen06g027340 Solanum pennellii HOM05D006304 ORTHO05D008584 3.7e-164 583.2 995 42.1
VMungo1215G2961 Vigna mungo HOM05D006304 ORTHO05D008584 3.7e-164 583.2 682 52.5
Nitab4.5_0000269g0180 Nicotiana tabacum HOM05D006304 ORTHO05D008584 4.9e-164 582.8 993 41.6
Duzib205G0644 Durio zibethinus HOM05D006304 ORTHO05D008584 8.3e-164 582.0 540 61.9
arahy.Tifrunner.gnm1.ann1.E16Z9R Arachis hypogaea HOM05D006304 ORTHO05D008584 9.2e-163 578.6 511 63.2
Glyma.05G029400 Glycine max HOM05D006304 ORTHO05D008584 3.5e-162 576.6 504 63.3
Gorai.008G191000 Gossypium raimondii HOM05D006304 ORTHO05D008584 8.6e-161 572.0 475 65.9
TWI60G1649 Tripterygium wilfordii HOM05D006304 ORTHO05D008584 8.6e-161 572.0 979 41.6
Sed0028137 Sechium edule HOM05D006304 ORTHO05D008584 1.5e-160 571.2 975 41.4
Psat4g053720 Pisum sativum HOM05D006304 ORTHO05D008584 5.6e-160 569.3 496 62.7
ClCG01G014430 Citrullus lanatus HOM05D006304 ORTHO05D008584 2.8e-159 567.0 1092 37.8
Gohir.D12G178452 Gossypium hirsutum HOM05D006304 ORTHO05D008584 4.7e-159 566.2 475 65.7
Oeu048746.1 Olea europaea HOM05D006304 ORTHO05D008584 1.1e-158 565.1 985 40.4
Cc04_g15450 Coffea canephora HOM05D006304 ORTHO05D008584 4.0e-158 563.1 547 59.8
Phvul.003G192300 Phaseolus vulgaris HOM05D006304 ORTHO05D008584 8.9e-158 562.0 635 53.7
Thecc.03G080300 Theobroma cacao HOM05D006304 ORTHO05D008584 8.9e-158 562.0 490 63.9
Medtr4g107890 Medicago truncatula HOM05D006304 ORTHO05D008584 2.0e-157 560.8 505 62.8
Ca_21844_v3 Cicer arietinum L. HOM05D006304 ORTHO05D008584 4.4e-157 559.7 505 62.6
Gohir.A12G175370 Gossypium hirsutum HOM05D006304 ORTHO05D008584 5.8e-157 559.3 469 65.7
Lj4g0004911 Lotus japonicus HOM05D006304 ORTHO05D008584 1.1e-155 555.1 591 54.8
Nitab4.5_0009895g0010 Nicotiana tabacum HOM05D006304 ORTHO05D008584 4.1e-155 553.1 992 40.0
Ciclev10019215m.g Citrus clementina HOM05D006304 ORTHO05D008584 5.4e-155 552.7 544 57.9
FAN04G3159 Fragaria x ananassa HOM05D006304 ORTHO05D008584 1.2e-154 551.6 536 58.4
DCAR_021535 Daucus carota HOM05D006304 ORTHO05D008584 2.7e-154 550.4 801 45.8
Potri.015G064600 Populus trichocarpa HOM05D006304 ORTHO05D008584 4.6e-154 549.7 471 64.1
CDE06G1311 Ceratophyllum demersum HOM05D006304 ORTHO05D008584 1.3e-153 548.1 954 40.5
TPR.G38415 Trifolium pratense HOM05D006304 ORTHO05D008584 1.3e-153 548.1 527 59.0
FAN08G3028 Fragaria x ananassa HOM05D006304 ORTHO05D008584 3.9e-153 546.6 538 57.8
Sabra15G0090300 Salix brachista HOM05D006304 ORTHO05D008584 3.9e-153 546.6 450 65.6
arahy.Tifrunner.gnm1.ann1.YQHF2A Arachis hypogaea HOM05D006304 ORTHO05D008584 4.3e-152 543.1 611 53.7
FAN18G3228 Fragaria x ananassa HOM05D006304 ORTHO05D008584 7.3e-152 542.3 582 54.6
Eucgr.B00434 Eucalyptus grandis HOM05D006304 ORTHO05D008584 1.2e-151 541.6 975 39.1
Solyc06g071040.4 Solanum lycopersicum HOM05D006304 ORTHO05D008584 3.6e-151 540.0 1013 40.7
SalBow5G3794 Salvia bowleyana HOM05D006304 ORTHO05D008584 5.2e-150 536.2 1033 38.6
PGR083G1524 Punica granatum HOM05D006304 ORTHO05D008584 6.9e-150 535.8 975 38.6
CAN.G628.40 Capsicum annuum HOM05D006304 ORTHO05D008584 7.6e-149 532.3 520 58.7
Migut.I00131 Erythranthe guttata HOM05D006304 ORTHO05D008584 1.2e-146 525.0 606 52.5
HPP92_021789 Vanilla planifolia HOM05D006304 ORTHO05D008584 1.2e-146 525.0 1032 38.4
PSO017G6991 Papaver somniferum HOM05D006304 ORTHO05D008584 1.6e-146 524.6 873 42.8
Manes.06G096000 Manihot esculenta HOM05D006304 ORTHO05D008584 3.0e-145 520.4 543 55.2
ATR1120G178 Amborella trichopoda HOM05D006304 ORTHO05D008584 2.5e-144 517.3 679 47.7
ECA247G4106 Erigeron canadensis HOM05D006304 ORTHO05D008584 9.0e-142 508.8 451 58.8
COL.COLO4_05911 Corchorus olitorius HOM05D006304 ORTHO05D008584 1.2e-141 508.4 457 62.4
SGA_v2.0_scaffold56G20049 Striga asiatica HOM05D006304 ORTHO05D008584 1.5e-141 508.1 412 64.6
Peaxi162Scf00013g00025 Petunia axillaris HOM05D006304 ORTHO05D008584 1.1e-139 501.9 1016 38.5
THA.LOC104821457 Tarenaya hassleriana HOM05D006304 ORTHO05D008584 2.4e-139 500.7 454 62.6
Atru.chr9.2307 Acer truncatum HOM05D006304 ORTHO05D008584 3.2e-139 500.4 409 65.0
FAN13G0685 Fragaria x ananassa HOM05D006304 ORTHO05D008584 2.3e-137 494.2 539 54.9
HanXRQChr02g0045271 Helianthus annuus HOM05D006304 ORTHO05D008584 3.3e-136 490.3 414 62.1
Os02g0215000 Oryza sativa ssp. japonica HOM05D006304 ORTHO05D008584 2.3e-129 467.6 526 53.2
Lsat_1_v5_gn_1_10941 Lactuca sativa HOM05D006304 ORTHO05D008584 5.1e-129 466.5 997 37.2
Zm00001eb240230 Zea mays HOM05D006304 ORTHO05D008584 8.7e-129 465.7 481 54.1
Thhalv10003777m.g Eutrema salsugineum HOM05D006304 ORTHO05D008584 2.5e-128 464.2 397 61.5
SEGI_29067 Sequoiadendron giganteum HOM05D006304 ORTHO05D008584 2.5e-128 464.2 712 45.8
AL8G39730 Arabidopsis lyrata HOM05D006304 ORTHO05D008584 3.3e-128 463.8 393 62.8
CSS0050297 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 3.3e-128 463.8 567 48.7
Sp2g25930 Schrenkiella parvula HOM05D006304 ORTHO05D008584 4.3e-128 463.4 488 53.7
AT5G62760 Arabidopsis thaliana HOM05D006304 ORTHO05D008584 2.8e-127 460.7 397 61.7
Carub.0008s2349 Capsella rubella HOM05D006304 ORTHO05D008584 8.1e-127 459.1 396 62.4
CARHR276550 Cardamine hirsuta HOM05D006304 ORTHO05D008584 6.9e-126 456.1 398 61.3
BcaB02g09690 Brassica carinata HOM05D006304 ORTHO05D008584 6.5e-124 449.5 393 60.8
A06p29540 Brassica napus HOM05D006304 ORTHO05D008584 7.1e-123 446.0 390 61.0
QL10p015696 Quercus lobata HOM05D006304 ORTHO05D008584 2.1e-122 444.5 724 43.0
BcaC01g02519 Brassica carinata HOM05D006304 ORTHO05D008584 1.1e-120 438.7 446 54.9
C03p63960 Brassica napus HOM05D006304 ORTHO05D008584 2.5e-120 437.6 447 55.0
BraA06t25899Z Brassica rapa HOM05D006304 ORTHO05D008584 6.3e-119 433.0 414 57.5
unitig_0.g2536 Utricularia gibba HOM05D006304 ORTHO05D008584 4.1e-118 430.3 395 59.2
BolC3t18650H Brassica oleracea HOM05D006304 ORTHO05D008584 7.2e-115 419.5 474 51.7
Aa31LG11G920 Aethionema arabicum HOM05D006304 ORTHO05D008584 2.5e-112 411.0 431 55.0
Mapoly0068s0038 Marchantia polymorpha HOM05D006304 ORTHO05D008584 2.9e-108 397.5 413 54.7
Lalb_Chr12g0196741 Lupinus albus HOM05D006304 ORTHO05D008584 2.5e-107 394.4 288 67.0
Oeu006477.2 Olea europaea HOM05D006304 ORTHO05D008584 3.1e-94 350.9 990 32.6
CBR_g5693 Chara braunii HOM05D006304 ORTHO05D008584 3.7e-87 327.4 477 44.2
Duzib084G0195 Durio zibethinus HOM05D006304 ORTHO05D008584 4.7e-74 283.9 285 58.2
PGSC0003DMG402033036 Solanum tuberosum HOM05D006304 ORTHO05D008584 6.8e-65 253.4 706 34.0
Cre14.g629400 Chlamydomonas reinhardtii HOM05D006304 ORTHO05D008584 7.6e-40 170.2 214 42.1
Actinidia28212 Actinidia chinensis HOM05D006304 ORTHO05D008584 8.4e-39 166.8 172 52.9
QL10p015692 Quercus lobata HOM05D006304 ORTHO05D008584 3.3e-35 154.8 112 65.2
Lalb_Chr12g0196731 Lupinus albus HOM05D006304 ORTHO05D008584 6.4e-31 140.6 111 65.8
Dinv19923 Davidia involucrata HOM05D006304 ORTHO05D008584 4.9e-23 114.4 365 27.9
Dinv19922 Davidia involucrata HOM05D006304 ORTHO05D008584 4.8e-18 97.8 89 60.7
QL10p015689 Quercus lobata HOM05D006304 ORTHO05D008584 9.0e-17 93.6 78 65.4
CSS0027196 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 9.3e-14 83.6 84 58.3
Duzib084G1176 Durio zibethinus HOM05D006304 ORTHO05D008584 3.1e-09 68.6 81 53.1
CSS0027880 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 2.2e-07 62.4 135 38.5


User provided reference genes

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