Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G0033 Trochodendron aralioides HOM05D005253 ORTHO05D006058 2.3e-167 592.4 356 100.0
Dinv38642 Davidia involucrata HOM05D005253 ORTHO05D006058 3.1e-100 369.4 359 63.0
GSVIVG01008154001 Vitis vinifera HOM05D005253 ORTHO05D006058 4.1e-100 369.0 355 64.2
Nn3g17535 Nelumbo nucifera HOM05D005253 ORTHO05D006058 6.7e-95 351.7 350 68.6
Potri.004G107000 Populus trichocarpa HOM05D005253 ORTHO05D006058 2.7e-88 329.7 357 63.9
TWI60G1362 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 2.7e-88 329.7 353 58.6
Duzib205G1609 Durio zibethinus HOM05D005253 ORTHO05D006058 4.7e-88 328.9 347 60.2
Duzib068G0534 Durio zibethinus HOM05D005253 ORTHO05D006058 8.0e-88 328.2 348 62.9
MBI14_g08108_MAGBIO Magnolia biondii HOM05D005253 ORTHO05D006058 1.8e-87 327.0 349 61.6
CSS0036905 Camellia sinensis var. sinensis HOM05D005253 ORTHO05D006058 6.8e-87 325.1 346 65.6
Ciclev10020920m.g Citrus clementina HOM05D005253 ORTHO05D006058 4.4e-86 322.4 351 61.3
Cfa017731 Carpinus fangiana HOM05D005253 ORTHO05D006058 2.4e-84 316.6 349 58.7
Dinv17459 Davidia involucrata HOM05D005253 ORTHO05D006058 2.4e-84 316.6 291 67.4
PSO478G2666 Papaver somniferum HOM05D005253 ORTHO05D006058 5.9e-83 312.0 344 59.0
Haze_18511 Corylus avellana HOM05D005253 ORTHO05D006058 7.7e-83 311.6 350 57.7
PSO017G7367 Papaver somniferum HOM05D005253 ORTHO05D006058 2.9e-82 309.7 344 54.4
vmacro17641 Vaccinium macrocarpon HOM05D005253 ORTHO05D006058 3.8e-82 309.3 370 53.2
Gohir.D07G063700 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.5e-81 307.4 353 55.5
TWI81G0215 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 4.2e-81 305.8 343 59.8
Gohir.A09G243900 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.2e-80 304.3 344 54.4
Rhsim08G0142100 Rhododendron simsii HOM05D005253 ORTHO05D006058 3.6e-80 302.8 344 54.4
Hma1.2p1_0060F.1_g032740 Hydrangea macrophylla HOM05D005253 ORTHO05D006058 4.7e-80 302.4 386 55.4
Gorai.006G268700 Gossypium raimondii HOM05D005253 ORTHO05D006058 1.8e-79 300.4 344 57.3
Gohir.D09G244600 Gossypium hirsutum HOM05D005253 ORTHO05D006058 9.8e-78 294.7 347 56.8
Glyma.05G018200 Glycine max HOM05D005253 ORTHO05D006058 4.9e-77 292.4 342 54.4
Manes.14G089100 Manihot esculenta HOM05D005253 ORTHO05D006058 4.5e-75 285.8 355 55.2
Glyma.17G081700 Glycine max HOM05D005253 ORTHO05D006058 5.9e-75 285.4 342 53.5
Prupe.5G210000 Prunus persica HOM05D005253 ORTHO05D006058 2.3e-74 283.5 343 58.3
Gohir.A07G058832 Gossypium hirsutum HOM05D005253 ORTHO05D006058 2.5e-73 280.0 353 53.0
Gorai.001G067300 Gossypium raimondii HOM05D005253 ORTHO05D006058 2.5e-73 280.0 353 51.6
MD14G1216600 Malus domestica HOM05D005253 ORTHO05D006058 2.8e-72 276.6 342 55.3
CANSAT80G0823 Cannabis sativa HOM05D005253 ORTHO05D006058 5.2e-71 272.3 346 52.6
Phvul.003G182200 Phaseolus vulgaris HOM05D005253 ORTHO05D006058 2.0e-70 270.4 342 55.8
MD06G1205700 Malus domestica HOM05D005253 ORTHO05D006058 7.5e-70 268.5 342 53.8
Sed0023471 Sechium edule HOM05D005253 ORTHO05D006058 1.7e-69 267.3 353 52.4
COL.COLO4_27496 Corchorus olitorius HOM05D005253 ORTHO05D006058 3.7e-69 266.2 349 51.3
Nitab4.5_0002467g0110 Nicotiana tabacum HOM05D005253 ORTHO05D006058 8.3e-69 265.0 348 53.2
MSTRG.9581 Avicennia marina HOM05D005253 ORTHO05D006058 3.2e-68 263.1 344 55.2
Lalb_Chr13g0302681 Lupinus albus HOM05D005253 ORTHO05D006058 5.4e-68 262.3 311 55.6
Cpa.g.sc3.232 Carica papaya HOM05D005253 ORTHO05D006058 7.0e-68 261.9 347 50.7
Peaxi162Scf00017g03254 Petunia axillaris HOM05D005253 ORTHO05D006058 7.0e-68 261.9 354 52.5
arahy.Tifrunner.gnm1.ann1.TSF3K2 Arachis hypogaea HOM05D005253 ORTHO05D006058 9.2e-68 261.5 345 51.3
VMungo1215G3162 Vigna mungo HOM05D005253 ORTHO05D006058 1.2e-67 261.2 340 54.7
Manes.06G080800 Manihot esculenta HOM05D005253 ORTHO05D006058 2.7e-67 260.0 296 60.8
Solyc03g114760.3 Solanum lycopersicum HOM05D005253 ORTHO05D006058 1.7e-66 257.3 347 53.6
THA.LOC104818357 Tarenaya hassleriana HOM05D005253 ORTHO05D006058 3.9e-66 256.1 342 50.9
Nitab4.5_0005994g0050 Nicotiana tabacum HOM05D005253 ORTHO05D006058 8.6e-66 255.0 344 52.9
RcHm_v2.0_Chr7g0183731 Rosa chinensis HOM05D005253 ORTHO05D006058 1.1e-65 254.6 339 54.3
FAN08G1625 Fragaria x ananassa HOM05D005253 ORTHO05D006058 3.3e-65 253.1 339 54.0
QL10p020742 Quercus lobata HOM05D005253 ORTHO05D006058 3.3e-65 253.1 512 37.5
Sopen03g033840 Solanum pennellii HOM05D005253 ORTHO05D006058 9.5e-65 251.5 347 53.3
FAN13G1214 Fragaria x ananassa HOM05D005253 ORTHO05D006058 1.2e-64 251.1 339 52.8
TPR.G1989 Trifolium pratense HOM05D005253 ORTHO05D006058 1.6e-64 250.8 342 45.9
ECA246G0831 Erigeron canadensis HOM05D005253 ORTHO05D006058 3.6e-64 249.6 351 51.9
PGSC0003DMG400024524 Solanum tuberosum HOM05D005253 ORTHO05D006058 4.7e-64 249.2 347 53.0
arahy.Tifrunner.gnm1.ann1.399KXC Arachis hypogaea HOM05D005253 ORTHO05D006058 1.4e-63 247.7 345 49.9
FvH4_5g13401 Fragaria vesca HOM05D005253 ORTHO05D006058 5.2e-63 245.7 339 53.1
Lj4g0025893 Lotus japonicus HOM05D005253 ORTHO05D006058 5.2e-63 245.7 301 51.5
Lsat_1_v5_gn_5_23380 Lactuca sativa HOM05D005253 ORTHO05D006058 6.8e-63 245.4 332 54.2
Medtr4g109960 Medicago truncatula HOM05D005253 ORTHO05D006058 6.8e-63 245.4 342 44.7
Atru.chr4.1592 Acer truncatum HOM05D005253 ORTHO05D006058 5.8e-62 242.3 350 54.9
Eucgr.K02550 Eucalyptus grandis HOM05D005253 ORTHO05D006058 7.5e-62 241.9 268 58.2
CiPaw.16G080100 Carya illinoinensis HOM05D005253 ORTHO05D006058 9.8e-62 241.5 263 70.3
Nitab4.5_0002041g0040 Nicotiana tabacum HOM05D005253 ORTHO05D006058 1.7e-61 240.7 348 50.0
Lj9C438G4 Lonicera japonica HOM05D005253 ORTHO05D006058 3.7e-61 239.6 333 59.2
Cc04_g08280 Coffea canephora HOM05D005253 ORTHO05D006058 1.4e-60 237.7 366 45.6
Oeu014427.1 Olea europaea HOM05D005253 ORTHO05D006058 1.4e-60 237.7 346 54.0
Hund09956 Selenicereus undatus HOM05D005253 ORTHO05D006058 1.4e-60 237.7 334 50.9
FAN18G4071 Fragaria x ananassa HOM05D005253 ORTHO05D006058 4.1e-60 236.1 355 50.7
HanXRQChr05g0157441 Helianthus annuus HOM05D005253 ORTHO05D006058 1.0e-58 231.5 328 56.1
DCAR_010175 Daucus carota HOM05D005253 ORTHO05D006058 2.3e-58 230.3 350 51.7
Thhalv10014100m.g Eutrema salsugineum HOM05D005253 ORTHO05D006058 3.0e-58 229.9 340 42.6
Aqoxy3G03749 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 5.0e-58 229.2 347 44.7
ATR0691G224 Amborella trichopoda HOM05D005253 ORTHO05D006058 2.5e-57 226.9 330 45.2
PGR044G0085 Punica granatum HOM05D005253 ORTHO05D006058 2.5e-57 226.9 341 47.5
TPR.G2086 Trifolium pratense HOM05D005253 ORTHO05D006058 3.3e-57 226.5 300 47.7
Migut.D01615 Erythranthe guttata HOM05D005253 ORTHO05D006058 5.6e-57 225.7 345 53.0
AL6G18490 Arabidopsis lyrata HOM05D005253 ORTHO05D006058 1.2e-56 224.6 339 42.8
ClCG04G011560 Citrullus lanatus HOM05D005253 ORTHO05D006058 1.6e-56 224.2 353 41.9
AT5G08120 Arabidopsis thaliana HOM05D005253 ORTHO05D006058 2.1e-56 223.8 339 42.5
SGA_v2.0_scaffold65G22104 Striga asiatica HOM05D005253 ORTHO05D006058 2.1e-56 223.8 342 47.1
PSO063G5368 Papaver somniferum HOM05D005253 ORTHO05D006058 6.2e-56 222.2 357 45.7
Peaxi162Scf00365g00114 Petunia axillaris HOM05D005253 ORTHO05D006058 4.0e-55 219.5 351 42.5
Aqoxy3G00549 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 6.8e-55 218.8 362 45.9
Sabra04G0074900 Salix brachista HOM05D005253 ORTHO05D006058 1.2e-54 218.0 294 54.1
PSO782G3834 Papaver somniferum HOM05D005253 ORTHO05D006058 2.0e-54 217.2 357 42.3
CAN.G982.39 Capsicum annuum HOM05D005253 ORTHO05D006058 2.6e-54 216.9 429 40.6
SHI17413 Sapria himalayana HOM05D005253 ORTHO05D006058 9.8e-54 214.9 336 44.9
SalBow7G2030 Salvia bowleyana HOM05D005253 ORTHO05D006058 1.3e-53 214.5 358 43.9
Ah.02g114240 Amaranthus hybridus HOM05D005253 ORTHO05D006058 6.4e-53 212.2 316 51.3
HanXRQChr02g0051141 Helianthus annuus HOM05D005253 ORTHO05D006058 1.1e-52 211.5 341 53.7
CDE05G1733 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 1.9e-52 210.7 353 42.2
Sc04g0003900 Simmondsia chinensis HOM05D005253 ORTHO05D006058 1.9e-52 210.7 310 45.5
MELO3C002054.2 Cucumis melo HOM05D005253 ORTHO05D006058 4.1e-52 209.5 358 41.6
CARHR205070 Cardamine hirsuta HOM05D005253 ORTHO05D006058 5.4e-52 209.1 341 41.1
unitig_578.g15937 Utricularia gibba HOM05D005253 ORTHO05D006058 6.0e-51 205.7 342 47.1
unitig_8.g4498 Utricularia gibba HOM05D005253 ORTHO05D006058 3.9e-50 203.0 342 48.5
AUR62039667 Chenopodium quinoa HOM05D005253 ORTHO05D006058 8.6e-50 201.8 327 48.0
Hund02544 Selenicereus undatus HOM05D005253 ORTHO05D006058 1.5e-49 201.1 314 49.0
Lj1g0009577 Lotus japonicus HOM05D005253 ORTHO05D006058 3.3e-49 199.9 307 48.5
BraA10t44904Z Brassica rapa HOM05D005253 ORTHO05D006058 7.3e-49 198.7 345 38.3
CsaV3_1G006260 Cucumis sativus L. HOM05D005253 ORTHO05D006058 1.2e-48 198.0 356 44.4
EL10Ac5g11189 Beta vulgaris HOM05D005253 ORTHO05D006058 2.8e-48 196.8 313 47.6
BcaB08g37285 Brassica carinata HOM05D005253 ORTHO05D006058 2.8e-48 196.8 344 38.4
C09p68830 Brassica napus HOM05D005253 ORTHO05D006058 2.8e-48 196.8 344 38.4
Nitab4.5_0001797g0020 Nicotiana tabacum HOM05D005253 ORTHO05D006058 6.2e-48 195.7 257 53.7
Thecc.03G108400 Theobroma cacao HOM05D005253 ORTHO05D006058 8.9e-47 191.8 246 54.9
Prupe.8G074000 Prunus persica HOM05D005253 ORTHO05D006058 3.4e-46 189.9 243 49.8
Zm00001eb380690 Zea mays HOM05D005253 ORTHO05D006058 1.6e-43 181.0 316 40.8
A10p28550 Brassica napus HOM05D005253 ORTHO05D006058 6.0e-43 179.1 345 36.8
Carub.0006s0700 Capsella rubella HOM05D005253 ORTHO05D006058 1.3e-42 177.9 339 42.8
AUR62032138 Chenopodium quinoa HOM05D005253 ORTHO05D006058 2.3e-42 177.2 275 50.2
Glyma.04G159100 Glycine max HOM05D005253 ORTHO05D006058 1.1e-41 174.9 296 38.5
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 7.3e-41 172.2 294 55.8
Ah.11g047400 Amaranthus hybridus HOM05D005253 ORTHO05D006058 1.2e-40 171.4 297 40.4
Ca_21755_v3 Cicer arietinum L. HOM05D005253 ORTHO05D006058 1.6e-40 171.0 342 36.8
Aa31LG3G18420 Aethionema arabicum HOM05D005253 ORTHO05D006058 4.7e-40 169.5 343 38.5
Zm00001eb280850 Zea mays HOM05D005253 ORTHO05D006058 8.9e-39 165.2 312 39.1
BolC9t59630H Brassica oleracea HOM05D005253 ORTHO05D006058 1.5e-38 164.5 345 34.2
Sp6g34840 Schrenkiella parvula HOM05D005253 ORTHO05D006058 2.0e-38 164.1 341 35.5
HPP92_015550 Vanilla planifolia HOM05D005253 ORTHO05D006058 2.0e-38 164.1 304 37.2
CDE02G3817 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 1.3e-37 161.4 318 37.7
HPP92_019902 Vanilla planifolia HOM05D005253 ORTHO05D006058 5.1e-34 149.4 308 37.7
Nn4g23537 Nelumbo nucifera HOM05D005253 ORTHO05D006058 1.3e-29 134.8 99 73.7
Actinidia04794 Actinidia chinensis HOM05D005253 ORTHO05D006058 7.1e-28 129.0 119 59.7
Peaxi162Scf00091g00143 Petunia axillaris HOM05D005253 ORTHO05D006058 2.8e-24 117.1 218 39.0
Psat4g046080 Pisum sativum HOM05D005253 ORTHO05D006058 2.8e-24 117.1 343 31.2
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 3.1e-23 113.6 191 37.2
SEGI_36320 Sequoiadendron giganteum HOM05D005253 ORTHO05D006058 5.3e-23 112.8 275 39.6
Os06g0284800 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 6.9e-23 112.5 296 32.4
Actinidia04795 Actinidia chinensis HOM05D005253 ORTHO05D006058 6.4e-21 105.9 134 50.0
Actinidia10441 Actinidia chinensis HOM05D005253 ORTHO05D006058 3.9e-18 96.7 111 50.5
arahy.Tifrunner.gnm1.ann1.U6KDHT Arachis hypogaea HOM05D005253 ORTHO05D006058 5.1e-18 96.3 314 31.8
Duzib132G0740 Durio zibethinus HOM05D005253 ORTHO05D006058 5.1e-18 96.3 79 64.6
Nn4g23536 Nelumbo nucifera HOM05D005253 ORTHO05D006058 6.7e-18 95.9 96 53.1
arahy.Tifrunner.gnm1.ann1.4B3W67 Arachis hypogaea HOM05D005253 ORTHO05D006058 4.8e-16 89.7 308 30.5
Os09g0476000 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 4.8e-16 89.7 192 34.4
Oeu014549.1 Olea europaea HOM05D005253 ORTHO05D006058 6.9e-15 85.9 109 49.5
TPR.G28909 Trifolium pratense HOM05D005253 ORTHO05D006058 4.9e-13 79.7 93 47.3
Zm00001eb315970 Zea mays HOM05D005253 ORTHO05D006058 8.4e-13 79.0 197 39.1
Gohir.D13G101706 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.1e-09 68.6 129 41.1
CsaV3_2G035990 Cucumis sativus L. HOM05D000092 ORTHO05D020529 1.9e-09 67.8 74 52.7
Pp3c1_41070 Physcomitrium patens HOM05D025852 ORTHO05D031190 9.6e-09 65.5 160 34.4
AagrBONN_evm.TU.Sc2ySwM_368.1809 Anthoceros agrestis HOM05D025852 ORTHO05D031190 1.5e-06 58.2 248 31.5
SMO134G0145 Selaginella moellendorffii HOM05D025852 ORTHO05D006058 4.5e-06 56.6 307 25.7
BolC2t06302H Brassica oleracea HOM05D009919 ORTHO05D012044 5.9e-06 56.2 113 36.3
BraA02t04942Z Brassica rapa HOM05D009919 ORTHO05D012044 5.9e-06 56.2 117 35.9


User provided reference genes

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