Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR369G1158 Trochodendron aralioides HOM05D004060 ORTHO05D004967 7.6e-104 380.9 262 100.0
TAR057G0003 Trochodendron aralioides HOM05D004060 ORTHO05D004967 1.6e-69 266.9 265 82.3
Dinv02133 Davidia involucrata HOM05D004060 ORTHO05D004967 9.4e-62 241.1 266 75.6
QL07p021067 Quercus lobata HOM05D004060 ORTHO05D004967 4.7e-61 238.8 271 74.5
Dinv02134 Davidia involucrata HOM05D004060 ORTHO05D004967 1.2e-56 224.2 266 74.4
MBI02_g05658_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 1.5e-54 217.2 271 59.8
Haze_19884 Corylus avellana HOM05D004060 ORTHO05D004967 7.2e-54 214.9 274 70.4
Haze_19892 Corylus avellana HOM05D004060 ORTHO05D004967 9.5e-54 214.5 274 70.4
Hma1.2p1_0696F.1_g204640 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 2.1e-53 213.4 277 70.0
Duzib128G1686 Durio zibethinus HOM05D004060 ORTHO05D004967 2.8e-53 213.0 282 63.1
Thecc.05G159200 Theobroma cacao HOM05D004060 ORTHO05D004967 3.6e-53 212.6 279 69.2
Ciclev10005594m.g Citrus clementina HOM05D004060 ORTHO05D004967 1.4e-52 210.7 283 67.5
Oeu033785.1 Olea europaea HOM05D004060 ORTHO05D004967 1.8e-52 210.3 271 68.6
Cfa016842 Carpinus fangiana HOM05D004060 ORTHO05D004967 5.2e-52 208.8 276 68.5
Dinv18064 Davidia involucrata HOM05D004060 ORTHO05D004967 8.3e-50 201.4 186 65.6
TAR633G1984 Trochodendron aralioides HOM05D004060 ORTHO05D004967 8.3e-50 201.4 263 67.7
Nn2g15346 Nelumbo nucifera HOM05D004060 ORTHO05D004967 1.4e-49 200.7 182 64.8
Prupe.7G064800 Prunus persica HOM05D004060 ORTHO05D004967 4.1e-49 199.1 291 68.0
Duzib106G1229 Durio zibethinus HOM05D004060 ORTHO05D004967 5.4e-49 198.7 271 68.6
CSS0022151 Camellia sinensis var. sinensis HOM05D004060 ORTHO05D004967 4.5e-48 195.7 282 67.7
FAN09G1680 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.3e-47 194.1 296 66.2
Cc06_g16910 Coffea canephora HOM05D004060 ORTHO05D004967 2.3e-47 193.4 270 66.7
FAN02G3665 Fragaria x ananassa HOM05D004060 ORTHO05D004967 3.9e-47 192.6 296 66.2
FAN05G0004 Fragaria x ananassa HOM05D004060 ORTHO05D004967 6.6e-47 191.8 296 66.2
Actinidia09345 Actinidia chinensis HOM05D004060 ORTHO05D004967 1.5e-46 190.7 275 67.3
COL.COLO4_28207 Corchorus olitorius HOM05D004060 ORTHO05D004967 3.3e-46 189.5 289 65.7
Oeu064312.1 Olea europaea HOM05D004060 ORTHO05D004967 4.3e-46 189.1 278 58.6
FvH4_6g23510 Fragaria vesca HOM05D004060 ORTHO05D004967 5.6e-46 188.7 294 66.0
FAN14G3078 Fragaria x ananassa HOM05D004060 ORTHO05D004967 5.6e-46 188.7 294 66.0
PGR004G1680 Punica granatum HOM05D004060 ORTHO05D004967 1.2e-45 187.6 275 67.6
RcHm_v2.0_Chr3g0481501 Rosa chinensis HOM05D004060 ORTHO05D004967 2.8e-45 186.4 296 64.5
Duzib093G0278 Durio zibethinus HOM05D004060 ORTHO05D004967 3.6e-45 186.0 194 59.8
Nn7g36226 Nelumbo nucifera HOM05D004060 ORTHO05D004967 1.8e-44 183.7 183 61.7
Lsat_1_v5_gn_5_162320 Lactuca sativa HOM05D004060 ORTHO05D004967 6.8e-44 181.8 273 66.3
Lju124C36T16 Lonicera japonica HOM05D004060 ORTHO05D004967 6.8e-44 181.8 188 60.6
VMungo1383G2713 Vigna mungo HOM05D004060 ORTHO05D004967 6.8e-44 181.8 269 66.5
vmacro22363 Vaccinium macrocarpon HOM05D004060 ORTHO05D004967 1.2e-43 181.0 287 65.2
Potri.016G054400 Populus trichocarpa HOM05D004060 ORTHO05D004967 3.4e-43 179.5 286 64.3
CiPaw.10G032000 Carya illinoinensis HOM05D004060 ORTHO05D004967 9.8e-43 177.9 289 61.9
Nitab4.5_0000733g0190 Nicotiana tabacum HOM05D004060 ORTHO05D004967 2.2e-42 176.8 263 70.3
Nitab4.5_0001663g0020 Nicotiana tabacum HOM05D004060 ORTHO05D004967 4.9e-42 175.6 285 66.7
Rhsim03G0018200 Rhododendron simsii HOM05D004060 ORTHO05D004967 1.1e-41 174.5 266 67.7
ECA248G2911 Erigeron canadensis HOM05D004060 ORTHO05D004967 1.4e-41 174.1 266 65.8
MD14G1069500 Malus domestica HOM05D004060 ORTHO05D004967 1.9e-41 173.7 301 62.8
Actinidia24529 Actinidia chinensis HOM05D004060 ORTHO05D004967 2.4e-41 173.3 204 55.4
Gohir.A11G312000 Gossypium hirsutum HOM05D004060 ORTHO05D004967 4.1e-41 172.6 265 65.7
Gohir.D11G328600 Gossypium hirsutum HOM05D004060 ORTHO05D004967 5.4e-41 172.2 288 61.8
Gorai.007G359900 Gossypium raimondii HOM05D004060 ORTHO05D004967 5.4e-41 172.2 288 61.8
Nitab4.5_0001509g0060 Nicotiana tabacum HOM05D004060 ORTHO05D004967 7.0e-41 171.8 272 63.6
Potri.006G053200 Populus trichocarpa HOM05D004060 ORTHO05D004967 7.0e-41 171.8 273 63.4
Manes.08G049300 Manihot esculenta HOM05D004060 ORTHO05D004967 9.2e-41 171.4 291 61.2
FAN05G5649 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.2e-40 171.0 283 64.7
Aqoxy1G00285 Aquilegia oxysepala HOM05D004060 ORTHO05D004967 1.6e-40 170.6 277 64.6
DCAR_013590 Daucus carota HOM05D004060 ORTHO05D004967 2.7e-40 169.9 270 65.6
PSO339G1536 Papaver somniferum HOM05D004060 ORTHO05D004967 4.6e-40 169.1 309 56.6
Cpa.g.sc92.28 Carica papaya HOM05D004060 ORTHO05D004967 7.8e-40 168.3 283 50.2
Phvul.001G135500 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 7.8e-40 168.3 186 57.5
PGSC0003DMG400023721 Solanum tuberosum HOM05D004060 ORTHO05D004967 1.0e-39 167.9 272 62.5
Sabra06G0037600 Salix brachista HOM05D004060 ORTHO05D004967 1.3e-39 167.5 273 61.9
Nitab4.5_0002841g0040 Nicotiana tabacum HOM05D004060 ORTHO05D004967 2.3e-39 166.8 290 60.7
Gohir.A11G312100 Gossypium hirsutum HOM05D004060 ORTHO05D004967 8.6e-39 164.9 288 60.8
Manes.09G024700 Manihot esculenta HOM05D004060 ORTHO05D004967 1.9e-38 163.7 268 63.4
Peaxi162Scf01287g00012 Petunia axillaris HOM05D004060 ORTHO05D004967 1.9e-38 163.7 242 69.0
SalBow6G3128 Salvia bowleyana HOM05D004060 ORTHO05D004967 4.3e-38 162.5 266 64.3
Solyc04g015520.3 Solanum lycopersicum HOM05D004060 ORTHO05D004967 4.3e-38 162.5 275 61.8
MSTRG.6438 Avicennia marina HOM05D004060 ORTHO05D004967 9.5e-38 161.4 294 60.9
Sopen10g030840 Solanum pennellii HOM05D004060 ORTHO05D004967 9.5e-38 161.4 262 63.7
HanXRQChr10g0300071 Helianthus annuus HOM05D004060 ORTHO05D004967 1.6e-37 160.6 250 68.0
Eucgr.A02379 Eucalyptus grandis HOM05D004060 ORTHO05D004967 2.8e-37 159.8 257 66.1
arahy.Tifrunner.gnm1.ann1.L89JBM Arachis hypogaea HOM05D004060 ORTHO05D004967 1.4e-36 157.5 285 61.1
ClCG10G016620 Citrullus lanatus HOM05D004060 ORTHO05D004967 2.3e-36 156.8 279 59.9
MSTRG.19874 Avicennia marina HOM05D004060 ORTHO05D004967 3.1e-36 156.4 275 62.5
Phvul.007G253600 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 3.1e-36 156.4 295 57.6
MELO3C009714.2 Cucumis melo HOM05D004060 ORTHO05D004967 4.0e-36 156.0 271 60.9
Medtr1g052560 Medicago truncatula HOM05D004060 ORTHO05D004967 6.8e-36 155.2 289 58.8
CAN.G128.15 Capsicum annuum HOM05D004060 ORTHO05D004967 1.2e-35 154.5 257 63.8
Oeu017953.1 Olea europaea HOM05D004060 ORTHO05D004967 1.5e-35 154.1 274 51.5
TWI74G0684 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 1.5e-35 154.1 269 63.9
Glyma.19G141100 Glycine max HOM05D004060 ORTHO05D004967 2.6e-35 153.3 272 62.5
CsaV3_3G039720 Cucumis sativus L. HOM05D004060 ORTHO05D004967 3.4e-35 152.9 265 61.5
PSO384G1698 Papaver somniferum HOM05D004060 ORTHO05D004967 5.8e-35 152.1 226 45.6
Ca_26888_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 9.8e-35 151.4 300 56.3
Migut.J01771 Erythranthe guttata HOM05D004060 ORTHO05D004967 9.8e-35 151.4 254 63.8
HPP92_019624 Vanilla planifolia HOM05D004060 ORTHO05D004967 1.3e-34 151.0 166 52.4
CANSAT80G2886 Cannabis sativa HOM05D004060 ORTHO05D004967 2.9e-34 149.8 276 60.9
Hma1.2p1_0247F.1_g101840 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 2.9e-34 149.8 272 61.4
Medtr7g091990 Medicago truncatula HOM05D004060 ORTHO05D004967 2.9e-34 149.8 285 60.7
Psat3g079320 Pisum sativum HOM05D004060 ORTHO05D004967 3.7e-34 149.4 276 60.5
PGSC0003DMG400027238 Solanum tuberosum HOM05D004060 ORTHO05D004967 3.7e-34 149.4 282 58.9
Sopen04g007590 Solanum pennellii HOM05D004060 ORTHO05D004967 1.1e-33 147.9 280 57.9
TPR.G21399 Trifolium pratense HOM05D004060 ORTHO05D004967 1.4e-33 147.5 289 57.1
HanXRQChr01g0008631 Helianthus annuus HOM05D004060 ORTHO05D004967 3.2e-33 146.4 261 63.2
Lalb_Chr25g0287361 Lupinus albus HOM05D004060 ORTHO05D004967 5.4e-33 145.6 287 59.2
MBI04_g36073_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 9.2e-33 144.8 246 39.8
MD12G1072300 Malus domestica HOM05D004060 ORTHO05D004967 1.6e-32 144.1 303 58.4
TWI77G1037 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 1.6e-32 144.1 261 62.1
Atru.chr1.1058 Acer truncatum HOM05D004060 ORTHO05D004967 3.5e-32 142.9 202 55.4
arahy.Tifrunner.gnm1.ann1.AM9K84 Arachis hypogaea HOM05D004060 ORTHO05D004967 3.5e-32 142.9 284 58.1
Os03g0808300 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 7.8e-32 141.7 262 57.6
TWI53G1485 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 1.3e-31 141.0 267 61.4
Sc13g0001870 Simmondsia chinensis HOM05D004060 ORTHO05D004967 3.9e-31 139.4 266 57.5
CiPaw.09G036400 Carya illinoinensis HOM05D004060 ORTHO05D004967 6.6e-31 138.7 214 68.7
Lj1g0010539 Lotus japonicus HOM05D004060 ORTHO05D004967 8.6e-31 138.3 287 56.8
TPR.G3730 Trifolium pratense HOM05D004060 ORTHO05D004967 1.5e-30 137.5 276 57.6
Sed0004660 Sechium edule HOM05D004060 ORTHO05D004967 1.9e-30 137.1 275 57.8
Ca_08471_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 2.5e-30 136.7 186 50.0
VMungo0720G0143 Vigna mungo HOM05D004060 ORTHO05D004967 3.3e-30 136.3 296 55.4
EL10Ac3g07036 Beta vulgaris HOM05D004060 ORTHO05D004967 4.3e-30 136.0 294 55.1
Lalb_Chr20g0110781 Lupinus albus HOM05D004060 ORTHO05D004967 4.3e-30 136.0 296 57.4
ATR0332G033 Amborella trichopoda HOM05D004060 ORTHO05D004967 5.6e-30 135.6 263 58.2
arahy.Tifrunner.gnm1.ann1.GL61MB Arachis hypogaea HOM05D004060 ORTHO05D004967 3.1e-28 129.8 244 60.2
DCAR_020477 Daucus carota HOM05D004060 ORTHO05D004967 3.1e-28 129.8 256 59.0
ECA247G2970 Erigeron canadensis HOM05D004060 ORTHO05D004967 3.1e-28 129.8 154 57.8
Glyma.02G182600 Glycine max HOM05D004060 ORTHO05D004967 6.8e-28 128.6 306 53.9
Os07g0569100 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 8.9e-28 128.3 269 54.3
Peaxi162Scf00493g00316 Petunia axillaris HOM05D004060 ORTHO05D004967 1.2e-27 127.9 208 46.6
Lsat_1_v5_gn_9_27220 Lactuca sativa HOM05D004060 ORTHO05D004967 1.5e-27 127.5 186 52.2
Glyma.03G138100 Glycine max HOM05D004060 ORTHO05D004967 3.4e-27 126.3 186 51.6
CARHR167760 Cardamine hirsuta HOM05D004060 ORTHO05D004967 2.4e-25 120.2 258 58.1
AT3G57540 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 5.4e-25 119.0 287 52.6
Thhalv10017761m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 2.1e-24 117.1 268 56.0
Aa31LG10G12370 Aethionema arabicum HOM05D004060 ORTHO05D004967 3.5e-24 116.3 271 55.4
AT2G41870 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 3.5e-24 116.3 274 56.2
BcaNung07195 Brassica carinata HOM05D004060 ORTHO05D004967 4.6e-24 115.9 273 51.3
SGA_v2.0_scaffold69G23102 Striga asiatica HOM05D004060 ORTHO05D004967 1.0e-23 114.8 273 37.4
AL5G39120 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 3.0e-23 113.2 284 52.8
BcaC07g40371 Brassica carinata HOM05D004060 ORTHO05D004967 3.0e-23 113.2 276 53.6
C08p33070 Brassica napus HOM05D004060 ORTHO05D004967 3.0e-23 113.2 276 53.6
BolC8t50907H Brassica oleracea HOM05D004060 ORTHO05D004967 3.0e-23 113.2 276 53.6
CAN.G676.50 Capsicum annuum HOM05D004060 ORTHO05D004967 3.0e-23 113.2 260 56.9
A09p50400 Brassica napus HOM05D004060 ORTHO05D004967 3.9e-23 112.8 276 53.3
Lj2C380T14 Lonicera japonica HOM05D004060 ORTHO05D004967 3.9e-23 112.8 122 59.0
Carub.0005s2438 Capsella rubella HOM05D004060 ORTHO05D004967 6.6e-23 112.1 276 52.2
Zm00001eb061820 Zea mays HOM05D004060 ORTHO05D004967 8.6e-23 111.7 191 39.8
A05p02610 Brassica napus HOM05D004060 ORTHO05D004967 1.1e-22 111.3 276 50.4
C04p03110 Brassica napus HOM05D004060 ORTHO05D004967 1.1e-22 111.3 277 42.6
BolC4t21952H Brassica oleracea HOM05D004060 ORTHO05D004967 1.1e-22 111.3 277 42.6
BraA05t19254Z Brassica rapa HOM05D004060 ORTHO05D004967 1.1e-22 111.3 276 50.4
BraA09t40492Z Brassica rapa HOM05D004060 ORTHO05D004967 1.9e-22 110.5 276 52.5
CARHR136960 Cardamine hirsuta HOM05D004060 ORTHO05D004967 1.9e-22 110.5 258 45.3
Sp5g05050 Schrenkiella parvula HOM05D004060 ORTHO05D004967 1.9e-22 110.5 259 54.4
Carub.0004s2418 Capsella rubella HOM05D004060 ORTHO05D004967 2.5e-22 110.2 282 53.9
Zm00001eb107230 Zea mays HOM05D004060 ORTHO05D004967 2.5e-22 110.2 254 45.3
AL4G40200 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 4.3e-22 109.4 272 54.4
THA.LOC104824453 Tarenaya hassleriana HOM05D004060 ORTHO05D004967 4.3e-22 109.4 281 53.7
BcaB02g07595 Brassica carinata HOM05D004060 ORTHO05D004967 1.6e-21 107.5 259 54.1
Ca_29692_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 4.7e-21 105.9 164 73.8
Zm00001eb324720 Zea mays HOM05D004060 ORTHO05D004967 4.7e-21 105.9 271 52.0
BcaC07g40387 Brassica carinata HOM05D004060 ORTHO05D004967 6.8e-20 102.1 284 53.2
SalBow1G5147 Salvia bowleyana HOM05D004060 ORTHO05D004967 1.5e-19 100.9 264 55.3
Thhalv10006130m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 4.4e-19 99.4 261 53.3
MSTRG.10823 Avicennia marina HOM05D004060 ORTHO05D004967 2.2e-18 97.1 211 47.9
Solyc10g080230.2 Solanum lycopersicum HOM05D004060 ORTHO05D004967 3.8e-18 96.3 133 49.6
Sp4g24140 Schrenkiella parvula HOM05D004060 ORTHO05D004967 1.1e-17 94.7 189 42.9
Glyma.10G099400 Glycine max HOM05D004060 ORTHO05D004967 1.4e-17 94.4 303 48.5
Os07g0208600 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 2.4e-17 93.6 258 51.9
Hund24724 Selenicereus undatus HOM05D004060 ORTHO05D004967 1.0e-15 88.2 272 38.2
arahy.Tifrunner.gnm1.ann1.49FMRE Arachis hypogaea HOM05D004060 ORTHO05D004967 1.7e-15 87.4 226 40.3
HanXRQChr10g0300061 Helianthus annuus HOM05D004060 ORTHO05D004967 1.5e-14 84.3 120 54.2
ECA247G3737 Erigeron canadensis HOM05D003799 ORTHO05D001964 3.6e-13 79.7 142 48.6
HanXRQChr05g0132091 Helianthus annuus HOM05D004060 ORTHO05D004967 1.1e-12 78.2 251 51.8
unitig_8.g4575 Utricularia gibba HOM05D004060 ORTHO05D004967 3.4e-11 73.2 175 32.6
Oeu056892.1 Olea europaea HOM05D004060 ORTHO05D004967 6.4e-10 68.9 75 56.0
arahy.Tifrunner.gnm1.ann1.N3K66E Arachis hypogaea HOM05D003004 ORTHO05D004967 1.9e-09 67.4 41 78.0
ECA236G0930 Erigeron canadensis HOM05D004060 ORTHO05D001964 5.4e-09 65.9 147 71.4
HPP92_019616 Vanilla planifolia HOM05D004060 ORTHO05D004967 9.3e-09 65.1 92 44.6
AUR62026012 Chenopodium quinoa HOM05D004060 ORTHO05D004967 4.6e-08 62.8 80 48.8
AUR62024421 Chenopodium quinoa HOM05D004060 ORTHO05D004967 1.7e-07 60.8 67 55.2
arahy.Tifrunner.gnm1.ann1.3TR3AL Arachis hypogaea HOM05D002100 ORTHO05D002310 1.5e-06 57.8 41 65.9


User provided reference genes

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