Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR369G1152 Trochodendron aralioides HOM05D005004 ORTHO05D006097 2.9e-73 278.5 140 100.0
TAR365G0253 Trochodendron aralioides HOM05D005004 ORTHO05D006097 1.0e-38 163.7 85 96.5
TAR623G0616 Trochodendron aralioides HOM05D005004 ORTHO05D006097 1.4e-35 153.3 85 88.2
MBI17_g08354_MAGBIO Magnolia biondii HOM05D005004 ORTHO05D006097 4.0e-35 151.8 115 67.8
GSVIVG01033842001 Vitis vinifera HOM05D005004 ORTHO05D006097 1.7e-33 146.4 85 82.4
Nn6g34902 Nelumbo nucifera HOM05D005004 ORTHO05D006097 4.9e-33 144.8 102 71.6
Cpa.g.sc5.20 Carica papaya HOM05D005004 ORTHO05D006097 1.4e-32 143.3 85 82.4
CDE02G2337 Ceratophyllum demersum HOM05D005004 ORTHO05D006097 3.2e-32 142.1 85 81.2
Aqoxy5G00209 Aquilegia oxysepala HOM05D005004 ORTHO05D006097 1.2e-31 140.2 85 81.2
Actinidia07927 Actinidia chinensis HOM05D005004 ORTHO05D006097 1.6e-31 139.8 85 76.5
COL.COLO4_29735 Corchorus olitorius HOM05D005004 ORTHO05D006097 1.6e-31 139.8 102 70.6
Haze_19610 Corylus avellana HOM05D005004 ORTHO05D006097 2.1e-31 139.4 85 80.0
CANSAT80G1737 Cannabis sativa HOM05D005004 ORTHO05D006097 2.7e-31 139.0 85 80.0
Thecc.05G089000 Theobroma cacao HOM05D005004 ORTHO05D006097 2.7e-31 139.0 85 80.0
CSS0031559 Camellia sinensis var. sinensis HOM05D005004 ORTHO05D006097 3.5e-31 138.7 108 63.9
QL07p038766 Quercus lobata HOM05D005004 ORTHO05D006097 3.5e-31 138.7 85 80.0
QL07p039017 Quercus lobata HOM05D005004 ORTHO05D006097 3.5e-31 138.7 85 80.0
Dinv21208 Davidia involucrata HOM05D005004 ORTHO05D006097 7.9e-31 137.5 103 68.0
Glyma.13G153600 Glycine max HOM05D005004 ORTHO05D006097 7.9e-31 137.5 99 69.7
TPR.G30035 Trifolium pratense HOM05D005004 ORTHO05D006097 7.9e-31 137.5 85 81.2
ATR0174G014 Amborella trichopoda HOM05D005004 ORTHO05D006097 1.0e-30 137.1 101 69.3
Cfa016606 Carpinus fangiana HOM05D005004 ORTHO05D006097 1.0e-30 137.1 81 82.7
Duzib106G1905 Durio zibethinus HOM05D005004 ORTHO05D006097 1.0e-30 137.1 85 82.4
Duzib093G1830 Durio zibethinus HOM05D005004 ORTHO05D006097 1.3e-30 136.7 85 77.6
Gohir.A01G138100 Gossypium hirsutum HOM05D005004 ORTHO05D006097 1.3e-30 136.7 85 80.0
Dinv31686 Davidia involucrata HOM05D005004 ORTHO05D006097 1.8e-30 136.3 85 76.5
Eucgr.C01891 Eucalyptus grandis HOM05D005004 ORTHO05D006097 1.8e-30 136.3 83 79.5
Medtr7g104600 Medicago truncatula HOM05D005004 ORTHO05D006097 1.8e-30 136.3 85 80.0
Rhsim03G0075200 Rhododendron simsii HOM05D005004 ORTHO05D006097 2.3e-30 136.0 95 71.6
Hma1.2p1_0232F.1_g097910 Hydrangea macrophylla HOM05D005004 ORTHO05D006097 3.9e-30 135.2 85 75.3
TWI77G0413 Tripterygium wilfordii HOM05D005004 ORTHO05D006097 3.9e-30 135.2 86 74.4
arahy.Tifrunner.gnm1.ann1.8NC760 Arachis hypogaea HOM05D005004 ORTHO05D006097 5.1e-30 134.8 85 77.6
Lj1g0017616 Lotus japonicus HOM05D005004 ORTHO05D006097 5.1e-30 134.8 85 78.8
ClCG03G002740 Citrullus lanatus HOM05D005004 ORTHO05D006097 6.7e-30 134.4 85 83.5
Os08g0369700 Oryza sativa ssp. japonica HOM05D005004 ORTHO05D006097 6.7e-30 134.4 83 78.3
Actinidia05431 Actinidia chinensis HOM05D005004 ORTHO05D006097 1.1e-29 133.7 85 74.1
Gohir.A01G206300 Gossypium hirsutum HOM05D005004 ORTHO05D006097 1.1e-29 133.7 85 75.3
Psat3g033320 Pisum sativum HOM05D005004 ORTHO05D006097 1.1e-29 133.7 85 77.6
PGR142G4351 Punica granatum HOM05D005004 ORTHO05D006097 1.1e-29 133.7 88 73.9
TWI53G1915 Tripterygium wilfordii HOM05D005004 ORTHO05D006097 1.1e-29 133.7 86 75.6
Eucgr.K02041 Eucalyptus grandis HOM05D005004 ORTHO05D006097 1.5e-29 133.3 85 75.3
Eucgr.L03536 Eucalyptus grandis HOM05D005004 ORTHO05D006097 1.5e-29 133.3 85 75.3
Hund03985 Selenicereus undatus HOM05D005004 ORTHO05D006097 1.5e-29 133.3 90 75.6
Zm00001eb170730 Zea mays HOM05D005004 ORTHO05D006097 1.9e-29 132.9 81 80.2
CDE04G1264 Ceratophyllum demersum HOM05D005004 ORTHO05D006097 2.5e-29 132.5 85 77.6
Lj2A137T29 Lonicera japonica HOM05D005004 ORTHO05D006097 2.5e-29 132.5 101 69.3
Lj1g0020740 Lotus japonicus HOM05D005004 ORTHO05D006097 2.5e-29 132.5 86 77.9
VMungo1215G1361 Vigna mungo HOM05D005004 ORTHO05D006097 2.5e-29 132.5 97 69.1
Gohir.D01G195700 Gossypium hirsutum HOM05D005004 ORTHO05D006097 3.3e-29 132.1 85 74.1
Gorai.002G239900 Gossypium raimondii HOM05D005004 ORTHO05D006097 3.3e-29 132.1 85 74.1
Nitab4.5_0003512g0070 Nicotiana tabacum HOM05D005004 ORTHO05D006097 3.3e-29 132.1 85 76.5
Peaxi162Scf00673g00319 Petunia axillaris HOM05D005004 ORTHO05D006097 3.3e-29 132.1 85 77.6
Phvul.003G095500 Phaseolus vulgaris HOM05D005004 ORTHO05D006097 3.3e-29 132.1 87 72.4
Prupe.5G046500 Prunus persica HOM05D005004 ORTHO05D006097 3.3e-29 132.1 83 80.7
EL10Ac7g16917 Beta vulgaris HOM05D005004 ORTHO05D006097 4.3e-29 131.7 85 76.5
Nitab4.5_0000368g0180 Nicotiana tabacum HOM05D005004 ORTHO05D006097 4.3e-29 131.7 85 76.5
Sabra06G0064000 Salix brachista HOM05D005004 ORTHO05D006097 4.3e-29 131.7 83 77.1
Nitab4.5_0004873g0070 Nicotiana tabacum HOM05D005004 ORTHO05D006097 5.6e-29 131.3 86 74.4
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 7.4e-29 131.0 86 76.7
DCAR_009165 Daucus carota HOM05D005004 ORTHO05D006097 7.4e-29 131.0 114 63.2
FvH4_6g18690 Fragaria vesca HOM05D005004 ORTHO05D006097 7.4e-29 131.0 84 79.8
FAN09G0264 Fragaria x ananassa HOM05D005004 ORTHO05D006097 7.4e-29 131.0 84 79.8
FAN14G5527 Fragaria x ananassa HOM05D005004 ORTHO05D006097 7.4e-29 131.0 84 79.8
Gorai.002G158400 Gossypium raimondii HOM05D005004 ORTHO05D006097 7.4e-29 131.0 85 78.8
Potri.006G084300 Populus trichocarpa HOM05D005004 ORTHO05D006097 7.4e-29 131.0 85 72.9
CSS0009320 Camellia sinensis var. sinensis HOM05D005004 ORTHO05D006097 9.6e-29 130.6 86 69.8
Manes.08G025200 Manihot esculenta HOM05D005004 ORTHO05D006097 1.3e-28 130.2 105 66.7
FAN05G0382 Fragaria x ananassa HOM05D005004 ORTHO05D006097 1.6e-28 129.8 84 78.6
FAN05G5799 Fragaria x ananassa HOM05D005004 ORTHO05D006097 1.6e-28 129.8 84 78.6
Lalb_Chr20g0111711 Lupinus albus HOM05D005004 ORTHO05D006097 1.6e-28 129.8 85 74.1
MD16G1269100 Malus domestica HOM05D005004 ORTHO05D006097 1.6e-28 129.8 83 80.7
RcHm_v2.0_Chr3g0473661 Rosa chinensis HOM05D005004 ORTHO05D006097 1.6e-28 129.8 84 78.6
Sopen01g043930 Solanum pennellii HOM05D005004 ORTHO05D006097 1.6e-28 129.8 85 75.3
CsaV3_1G013480 Cucumis sativus L. HOM05D005004 ORTHO05D006097 2.1e-28 129.4 85 80.0
FAN02G1574 Fragaria x ananassa HOM05D005004 ORTHO05D006097 2.1e-28 129.4 84 78.6
Gohir.D01G127800 Gossypium hirsutum HOM05D005004 ORTHO05D006097 2.1e-28 129.4 85 77.6
SalBow5G1155 Salvia bowleyana HOM05D005004 ORTHO05D006097 2.1e-28 129.4 107 60.7
Solyc01g100410.3 Solanum lycopersicum HOM05D005004 ORTHO05D006097 2.1e-28 129.4 85 75.3
PGSC0003DMG403002803 Solanum tuberosum HOM05D005004 ORTHO05D006097 2.1e-28 129.4 85 75.3
CAN.G1715.5 Capsicum annuum HOM05D005004 ORTHO05D006097 2.8e-28 129.0 85 75.3
CAN.G1164.37 Capsicum annuum HOM05D005004 ORTHO05D006097 3.6e-28 128.6 85 74.1
CiPaw.09G013900 Carya illinoinensis HOM05D005004 ORTHO05D006097 3.6e-28 128.6 81 77.8
AUR62028526 Chenopodium quinoa HOM05D005004 ORTHO05D006097 3.6e-28 128.6 86 74.4
Sc20g0006290 Simmondsia chinensis HOM05D005004 ORTHO05D006097 3.6e-28 128.6 86 72.1
AUR62006181 Chenopodium quinoa HOM05D005004 ORTHO05D006097 4.8e-28 128.3 93 71.0
Lalb_Chr25g0288321 Lupinus albus HOM05D005004 ORTHO05D006097 4.8e-28 128.3 85 75.3
vmacro07408 Vaccinium macrocarpon HOM05D005004 ORTHO05D006097 4.8e-28 128.3 94 70.2
Sed0022281 Sechium edule HOM05D005004 ORTHO05D006097 6.2e-28 127.9 85 78.8
Aa31LG1G21370 Aethionema arabicum HOM05D005004 ORTHO05D006097 8.1e-28 127.5 90 71.1
arahy.Tifrunner.gnm1.ann1.E5K2FZ Arachis hypogaea HOM05D005004 ORTHO05D006097 1.1e-27 127.1 114 62.3
Hma1.2p1_0580F.1_g182880 Hydrangea macrophylla HOM05D005004 ORTHO05D006097 1.1e-27 127.1 81 76.5
Sed0018976 Sechium edule HOM05D005004 ORTHO05D006097 1.1e-27 127.1 85 75.3
THA.LOC104826944 Tarenaya hassleriana HOM05D005004 ORTHO05D006097 1.1e-27 127.1 85 72.9
MSTRG.10365 Avicennia marina HOM05D005004 ORTHO05D006097 1.4e-27 126.7 107 62.6
CsaV3_1G033770 Cucumis sativus L. HOM05D005004 ORTHO05D006097 1.4e-27 126.7 85 76.5
MD06G1040300 Malus domestica HOM05D005004 ORTHO05D006097 1.4e-27 126.7 83 78.3
SEGI_14769 Sequoiadendron giganteum HOM05D005004 ORTHO05D006097 1.4e-27 126.7 85 75.3
A10p32210 Brassica napus HOM05D005004 ORTHO05D006097 1.8e-27 126.3 90 70.0
BraA10t45264Z Brassica rapa HOM05D005004 ORTHO05D006097 1.8e-27 126.3 90 70.0
Ciclev10012954m.g Citrus clementina HOM05D005004 ORTHO05D006097 1.8e-27 126.3 85 72.9
Migut.L01778 Erythranthe guttata HOM05D005004 ORTHO05D006097 1.8e-27 126.3 83 74.7
HPP92_018556 Vanilla planifolia HOM05D005004 ORTHO05D006097 1.8e-27 126.3 85 71.8
C02p01610 Brassica napus HOM05D005004 ORTHO05D006097 2.4e-27 125.9 90 71.1
BolC2t06126H Brassica oleracea HOM05D005004 ORTHO05D006097 2.4e-27 125.9 90 71.1
AL6G13490 Arabidopsis lyrata HOM05D005004 ORTHO05D006097 3.1e-27 125.6 90 68.9
BcaC03g12976 Brassica carinata HOM05D005004 ORTHO05D006097 3.1e-27 125.6 90 71.1
Carub.0006s0286 Capsella rubella HOM05D005004 ORTHO05D006097 3.1e-27 125.6 90 68.9
Thhalv10014896m.g Eutrema salsugineum HOM05D005004 ORTHO05D006097 4.0e-27 125.2 90 68.9
BcaB05g21795 Brassica carinata HOM05D005004 ORTHO05D006097 5.3e-27 124.8 90 70.0
BcaC06g32094 Brassica carinata HOM05D005004 ORTHO05D006097 5.3e-27 124.8 90 70.0
C09p73010 Brassica napus HOM05D005004 ORTHO05D006097 5.3e-27 124.8 90 70.0
BolC9t60036H Brassica oleracea HOM05D005004 ORTHO05D006097 5.3e-27 124.8 90 70.0
CARHR209350 Cardamine hirsuta HOM05D005004 ORTHO05D006097 5.3e-27 124.8 90 71.1
Atru.chr8.1540 Acer truncatum HOM05D005004 ORTHO05D006097 6.9e-27 124.4 85 75.3
BcaC03g12974 Brassica carinata HOM05D007309 ORTHO05D006097 6.9e-27 124.4 87 72.4
BraA02t04792Z Brassica rapa HOM05D005004 ORTHO05D006097 6.9e-27 124.4 90 70.0
MELO3C020686.2 Cucumis melo HOM05D005004 ORTHO05D006097 6.9e-27 124.4 85 75.3
SGA_v2.0_scaffold184G39963 Striga asiatica HOM05D005004 ORTHO05D006097 6.9e-27 124.4 100 62.0
Cc06_g05740 Coffea canephora HOM05D005004 ORTHO05D006097 9.0e-27 124.0 85 71.8
PSO339G3768 Papaver somniferum HOM05D005004 ORTHO05D006097 9.0e-27 124.0 85 74.1
PSO384G4260 Papaver somniferum HOM05D005004 ORTHO05D006097 9.0e-27 124.0 85 74.1
Sp6g38820 Schrenkiella parvula HOM05D005004 ORTHO05D006097 9.0e-27 124.0 90 67.8
unitig_899.g15202 Utricularia gibba HOM05D005004 ORTHO05D006097 9.0e-27 124.0 85 70.6
ClCG03G001800 Citrullus lanatus HOM05D005004 ORTHO05D006097 3.4e-26 122.1 112 63.4
SGA_v2.0_scaffold35G14070 Striga asiatica HOM05D005004 ORTHO05D006097 1.3e-25 120.2 109 58.7
AT5G03905 Arabidopsis thaliana HOM05D005004 ORTHO05D006097 1.7e-25 119.8 85 70.6
HanXRQChr15g0491011 Helianthus annuus HOM05D005004 ORTHO05D006097 1.7e-25 119.8 85 68.2
HanXRQChr17g0554781 Helianthus annuus HOM05D005004 ORTHO05D006097 1.7e-25 119.8 85 68.2
ECA236G3187 Erigeron canadensis HOM05D005004 ORTHO05D006097 9.3e-24 114.0 80 71.2
SalBow5G4790 Salvia bowleyana HOM05D005004 ORTHO05D006097 1.2e-23 113.6 78 71.8
Aa31LG3G2670 Aethionema arabicum HOM05D005004 ORTHO05D006097 1.3e-22 110.2 85 63.5
Zm00001eb042730 Zea mays HOM05D005004 ORTHO05D006097 1.1e-21 107.1 89 61.8
Os08g0363800 Oryza sativa ssp. japonica HOM05D005004 ORTHO05D006097 3.3e-21 105.5 64 78.1
Hma1.2p1_3639F.1_g337130 Hydrangea macrophylla HOM05D005004 ORTHO05D006097 4.3e-21 105.1 89 62.9
Pp3c3_34710 Physcomitrium patens HOM05D005004 ORTHO05D006097 4.3e-21 105.1 89 58.4
CBR_g27757 Chara braunii HOM05D005004 ORTHO05D006097 5.6e-21 104.8 89 57.3
AagrBONN_evm.TU.Sc2ySwM_228.4176 Anthoceros agrestis HOM05D005004 ORTHO05D006097 8.1e-20 100.9 86 55.8
SMO171G0092 Selaginella moellendorffii HOM05D005004 ORTHO05D006097 1.8e-19 99.8 69 65.2
Mapoly0089s0053 Marchantia polymorpha HOM05D005004 ORTHO05D006097 1.5e-18 96.7 86 53.5
Lsat_1_v5_gn_8_77061 Lactuca sativa HOM05D004768 ORTHO05D005812 1.0e-17 94.0 86 57.0
MCO02G129 Micromonas commoda HOM05D005004 ORTHO05D006097 5.5e-16 88.2 83 49.4
Glyma.03G195800 Glycine max HOM05D005004 ORTHO05D006097 4.6e-15 85.1 78 57.7
vmacro08717 Vaccinium macrocarpon HOM05D005004 ORTHO05D006097 1.9e-13 79.7 52 69.2
Hma1.2p1_0160F.1_g071250 Hydrangea macrophylla HOM05D005004 ORTHO05D006097 7.4e-13 77.8 52 71.2
Cre07.g349600 Chlamydomonas reinhardtii HOM05D005004 ORTHO05D006097 2.8e-12 75.9 85 44.7
Hma1.2p1_0235F.1_g098620 Hydrangea macrophylla HOM05D005004 ORTHO05D012020 2.4e-11 72.8 105 44.8
PRCOL_00000026 Prasinoderma coloniale HOM05D005004 ORTHO05D006097 7.6e-10 67.8 106 38.7
Pp3s30_920 Physcomitrium patens HOM05D002293 ORTHO05D006850 1.0e-09 67.4 125 35.2
Cc06_g20090 Coffea canephora HOM05D005004 ORTHO05D006097 2.2e-09 66.2 39 76.9
MSTRG.5844 Avicennia marina HOM05D005004 ORTHO05D006097 6.5e-09 64.7 48 66.7
Haze_27657 Corylus avellana HOM05D005004 ORTHO05D006097 5.5e-08 61.6 71 42.3
Pp3c2_12660 Physcomitrium patens HOM05D002293 ORTHO05D006850 7.9e-07 57.8 98 36.7
Pp3c1_29460 Physcomitrium patens HOM05D002293 ORTHO05D006850 1.3e-06 57.0 93 36.6
SEGI_15698 Sequoiadendron giganteum HOM05D002293 ORTHO05D006850 3.9e-06 55.5 86 37.2
AT2G36260 Arabidopsis thaliana HOM05D003456 ORTHO05D004082 5.1e-06 55.1 92 33.7


User provided reference genes

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