Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR369G1054 Trochodendron aralioides HOM05D004659 ORTHO05D005547 7.6e-116 420.6 229 100.0
Nn2g10610 Nelumbo nucifera HOM05D004659 ORTHO05D005547 1.6e-94 349.7 229 84.7
Nn8g38769 Nelumbo nucifera HOM05D004659 ORTHO05D005547 5.3e-93 344.7 229 83.4
Aqoxy4G03156 Aquilegia oxysepala HOM05D004659 ORTHO05D005547 2.0e-84 316.2 227 78.4
PSO384G3929 Papaver somniferum HOM05D004659 ORTHO05D005547 2.0e-79 299.7 232 76.7
Prupe.8G222500 Prunus persica HOM05D004659 ORTHO05D005547 1.7e-78 296.6 236 72.9
Cpa.g.sc1.279 Carica papaya HOM05D004659 ORTHO05D005547 2.2e-78 296.2 229 72.5
CiPaw.02G177400 Carya illinoinensis HOM05D004659 ORTHO05D005547 2.8e-78 295.8 227 70.0
vmacro04881 Vaccinium macrocarpon HOM05D004659 ORTHO05D005547 2.8e-78 295.8 236 69.1
Lj1P926T21 Lonicera japonica HOM05D004659 ORTHO05D005547 4.8e-78 295.0 232 69.8
PSO339G6228 Papaver somniferum HOM05D004659 ORTHO05D005547 4.8e-78 295.0 232 75.9
Thecc.10G065300 Theobroma cacao HOM05D004659 ORTHO05D005547 2.4e-77 292.7 229 75.5
Gorai.009G315800 Gossypium raimondii HOM05D004659 ORTHO05D005547 4.1e-77 292.0 224 69.2
MD05G1196100 Malus domestica HOM05D004659 ORTHO05D005547 4.1e-77 292.0 236 70.8
Nitab4.5_0004104g0080 Nicotiana tabacum HOM05D004659 ORTHO05D005547 4.1e-77 292.0 230 69.6
Haze_22491 Corylus avellana HOM05D004659 ORTHO05D005547 5.3e-77 291.6 227 75.8
CDE09G1094 Ceratophyllum demersum HOM05D004659 ORTHO05D005547 1.2e-76 290.4 224 74.6
Gohir.D05G298600 Gossypium hirsutum HOM05D004659 ORTHO05D005547 1.5e-76 290.0 224 68.8
Rhsim03G0135900 Rhododendron simsii HOM05D004659 ORTHO05D005547 2.0e-76 289.7 233 67.4
CSS0038055 Camellia sinensis var. sinensis HOM05D004659 ORTHO05D005547 3.5e-76 288.9 233 68.7
Gohir.A05G298900 Gossypium hirsutum HOM05D004659 ORTHO05D005547 3.5e-76 288.9 224 68.3
PGR031G1734 Punica granatum HOM05D004659 ORTHO05D005547 4.5e-76 288.5 228 68.9
Solyc04g009540.1 Solanum lycopersicum HOM05D004659 ORTHO05D005547 4.5e-76 288.5 231 67.1
Sopen04g004700 Solanum pennellii HOM05D004659 ORTHO05D005547 4.5e-76 288.5 231 67.1
Peaxi162Scf00195g00083 Petunia axillaris HOM05D004659 ORTHO05D005547 5.9e-76 288.1 224 68.8
Manes.07G069200 Manihot esculenta HOM05D004659 ORTHO05D005547 7.7e-76 287.7 231 68.8
Nitab4.5_0000691g0220 Nicotiana tabacum HOM05D004659 ORTHO05D005547 7.7e-76 287.7 230 69.1
MD10G1183400 Malus domestica HOM05D004659 ORTHO05D005547 1.0e-75 287.3 232 71.6
Cfa013817 Carpinus fangiana HOM05D004659 ORTHO05D005547 1.3e-75 287.0 227 74.0
MELO3C011720.2 Cucumis melo HOM05D004659 ORTHO05D005547 1.7e-75 286.6 233 71.7
CsaV3_5G006380 Cucumis sativus L. HOM05D004659 ORTHO05D005547 2.2e-75 286.2 235 71.5
COL.COLO4_23776 Corchorus olitorius HOM05D004659 ORTHO05D005547 2.9e-75 285.8 230 74.8
PGSC0003DMG400032570 Solanum tuberosum HOM05D004659 ORTHO05D005547 2.9e-75 285.8 231 66.7
Duzib106G0066 Durio zibethinus HOM05D004659 ORTHO05D005547 1.9e-74 283.1 224 71.9
MBI05_g34749_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 1.9e-74 283.1 233 70.0
Hma1.2p1_2685F.1_g326920 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 3.2e-74 282.3 235 66.0
Oeu017240.1 Olea europaea HOM05D004659 ORTHO05D005547 7.2e-74 281.2 230 66.1
Atru.chr12.612 Acer truncatum HOM05D004659 ORTHO05D005547 1.2e-73 280.4 233 66.5
ClCG02G013790 Citrullus lanatus HOM05D004659 ORTHO05D005547 1.6e-73 280.0 235 68.5
CAN.G186.30 Capsicum annuum HOM05D004659 ORTHO05D005547 3.6e-73 278.9 231 66.2
TWI38G0010 Tripterygium wilfordii HOM05D004659 ORTHO05D005547 3.6e-73 278.9 238 67.6
Lsat_1_v5_gn_9_66541 Lactuca sativa HOM05D004659 ORTHO05D005547 6.1e-73 278.1 235 69.8
Sed0009994 Sechium edule HOM05D004659 ORTHO05D005547 8.0e-73 277.7 233 69.1
RcHm_v2.0_Chr6g0287931 Rosa chinensis HOM05D004659 ORTHO05D005547 1.0e-72 277.3 228 71.5
QL08p057255 Quercus lobata HOM05D004659 ORTHO05D005547 3.0e-72 275.8 226 70.8
HanXRQChr09g0247171 Helianthus annuus HOM05D004659 ORTHO05D005547 3.9e-72 275.4 228 71.1
CANSAT35G1484 Cannabis sativa HOM05D004659 ORTHO05D005547 5.2e-72 275.0 231 68.8
Ca_21106_v3 Cicer arietinum L. HOM05D004659 ORTHO05D005547 8.8e-72 274.2 229 62.9
MSTRG.9197 Avicennia marina HOM05D004659 ORTHO05D005547 1.5e-71 273.5 231 66.2
unitig_46.g18586 Utricularia gibba HOM05D004659 ORTHO05D005547 1.5e-71 273.5 235 65.5
Medtr4g131540 Medicago truncatula HOM05D004659 ORTHO05D005547 2.0e-71 273.1 227 64.3
VMungo0464G0639 Vigna mungo HOM05D004659 ORTHO05D005547 2.6e-71 272.7 203 68.5
arahy.Tifrunner.gnm1.ann1.23T474 Arachis hypogaea HOM05D004659 ORTHO05D005547 3.3e-71 272.3 180 75.0
Glyma.17G075900 Glycine max HOM05D004659 ORTHO05D005547 4.4e-71 271.9 203 74.4
Phvul.004G002100 Phaseolus vulgaris HOM05D004659 ORTHO05D005547 4.4e-71 271.9 225 62.2
ATR0594G228 Amborella trichopoda HOM05D004659 ORTHO05D005547 7.4e-71 271.2 199 75.4
Cc09_g02380 Coffea canephora HOM05D004659 ORTHO05D005547 9.7e-71 270.8 234 69.2
SalBow4G3080 Salvia bowleyana HOM05D004659 ORTHO05D005547 9.7e-71 270.8 228 63.6
THA.LOC104799364 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 1.3e-70 270.4 207 65.7
Ciclev10032705m.g Citrus clementina HOM05D004659 ORTHO05D005547 2.2e-70 269.6 229 69.9
THA.LOC104827313 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 2.2e-70 269.6 228 63.2
Lalb_Chr07g0179691 Lupinus albus HOM05D004659 ORTHO05D005547 2.8e-70 269.2 218 71.6
BcaNung01889 Brassica carinata HOM05D004659 ORTHO05D005547 3.7e-70 268.9 198 73.2
CDE02G4355 Ceratophyllum demersum HOM05D002697 ORTHO05D005547 3.7e-70 268.9 178 83.7
Sabra08G0032100 Salix brachista HOM05D004659 ORTHO05D005547 3.7e-70 268.9 222 66.2
DCAR_019149 Daucus carota HOM05D004659 ORTHO05D005547 6.3e-70 268.1 230 68.7
Potri.008G045800 Populus trichocarpa HOM05D004659 ORTHO05D005547 6.3e-70 268.1 228 65.8
FvH4_2g21340 Fragaria vesca HOM05D004659 ORTHO05D005547 1.1e-69 267.3 217 73.7
BcaC04g19111 Brassica carinata HOM05D004659 ORTHO05D005547 1.8e-69 266.5 209 67.9
A10p24760 Brassica napus HOM05D004659 ORTHO05D005547 1.8e-69 266.5 209 70.3
C02p06210 Brassica napus HOM05D004659 ORTHO05D005547 1.8e-69 266.5 198 72.7
C09p63590 Brassica napus HOM05D004659 ORTHO05D005547 1.8e-69 266.5 209 70.3
BolC2t06562H Brassica oleracea HOM05D004659 ORTHO05D005547 1.8e-69 266.5 211 70.1
BolC9t59202H Brassica oleracea HOM05D004659 ORTHO05D005547 1.8e-69 266.5 209 67.9
BraA02t05172Z Brassica rapa HOM05D004659 ORTHO05D005547 1.8e-69 266.5 229 67.7
BraA10t44539Z Brassica rapa HOM05D004659 ORTHO05D005547 1.8e-69 266.5 209 70.3
Potri.010G215900 Populus trichocarpa HOM05D004659 ORTHO05D005547 2.4e-69 266.2 232 65.1
Sc09g0006840 Simmondsia chinensis HOM05D004659 ORTHO05D005547 2.4e-69 266.2 231 63.6
ECA232G1287 Erigeron canadensis HOM05D004659 ORTHO05D005547 5.3e-69 265.0 179 79.9
FAN24G1009 Fragaria x ananassa HOM05D004659 ORTHO05D005547 5.3e-69 265.0 201 76.1
Psat4g007600 Pisum sativum HOM05D004659 ORTHO05D005547 5.3e-69 265.0 230 61.7
Thhalv10014625m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 7.0e-69 264.6 226 67.3
BcaNung01147 Brassica carinata HOM05D004659 ORTHO05D005547 1.2e-68 263.8 198 72.7
Lj4g0017760 Lotus japonicus HOM05D004659 ORTHO05D005547 1.6e-68 263.5 231 67.5
Sp6g30510 Schrenkiella parvula HOM05D004659 ORTHO05D005547 2.0e-68 263.1 226 65.9
Ah.10g033100 Amaranthus hybridus HOM05D004659 ORTHO05D005547 4.5e-68 261.9 187 73.8
CARHR199930 Cardamine hirsuta HOM05D004659 ORTHO05D005547 1.3e-67 260.4 225 61.3
Sabra10G0166900 Salix brachista HOM05D004659 ORTHO05D005547 2.2e-67 259.6 232 62.9
SGA_v2.0_scaffold62G21448 Striga asiatica HOM05D004659 ORTHO05D005547 2.9e-67 259.2 231 62.8
Actinidia03015 Actinidia chinensis HOM05D004659 ORTHO05D005547 5.0e-67 258.5 200 68.5
AL6G24130 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 1.5e-66 256.9 212 62.7
Carub.0006s1167 Capsella rubella HOM05D004659 ORTHO05D005547 1.5e-66 256.9 208 67.3
Aa31sc127G30 Aethionema arabicum HOM05D004659 ORTHO05D005547 2.5e-66 256.1 228 58.3
AUR62027894 Chenopodium quinoa HOM05D004659 ORTHO05D005547 2.5e-66 256.1 214 62.1
AT5G13510 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 9.4e-66 254.2 212 61.8
Zm00001eb397230 Zea mays HOM05D004659 ORTHO05D005547 1.2e-65 253.8 220 66.8
AUR62036014 Chenopodium quinoa HOM05D004659 ORTHO05D005547 2.1e-65 253.1 214 61.2
SMO239G0117 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 2.1e-65 253.1 175 81.7
Os03g0284400 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 2.7e-65 252.7 201 70.1
Zm00001eb013020 Zea mays HOM05D004659 ORTHO05D005547 1.0e-64 250.8 180 76.1
Mapoly0115s0051 Marchantia polymorpha HOM05D004659 ORTHO05D005547 8.8e-64 247.7 178 77.0
Pp3c2_35950 Physcomitrium patens HOM05D004659 ORTHO05D005547 1.2e-63 247.3 178 75.3
Dinv31375 Davidia involucrata HOM05D004659 ORTHO05D005547 2.0e-63 246.5 170 77.6
Lalb_Chr13g0301081 Lupinus albus HOM05D004659 ORTHO05D005547 1.3e-62 243.8 220 67.3
AagrBONN_evm.TU.Sc2ySwM_228.2422 Anthoceros agrestis HOM05D004659 ORTHO05D005547 6.3e-62 241.5 175 77.1
Pp3c1_1330 Physcomitrium patens HOM05D004659 ORTHO05D005547 8.3e-62 241.1 184 72.8
SMO001G0016 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 3.5e-52 209.1 136 73.5
TPR.G37110 Trifolium pratense HOM05D004659 ORTHO05D005547 1.1e-45 187.6 130 68.5
AT3G12370 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 5.4e-45 185.3 136 66.9
AL3G24020 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 1.2e-44 184.1 136 66.2
Carub.0003s1173 Capsella rubella HOM05D004659 ORTHO05D005547 1.0e-43 181.0 133 66.2
Sp3g10560 Schrenkiella parvula HOM05D004659 ORTHO05D005547 2.9e-43 179.5 136 63.2
Thhalv10022434m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 3.9e-43 179.1 136 63.2
C01p52890 Brassica napus HOM05D004659 ORTHO05D005547 1.5e-42 177.2 135 63.0
Aa31sc153G80 Aethionema arabicum HOM05D004659 ORTHO05D005547 2.5e-42 176.4 136 61.0
BcaC05g29267 Brassica carinata HOM05D004659 ORTHO05D005547 4.3e-42 175.6 135 62.2
BcaC09g48234 Brassica carinata HOM05D004659 ORTHO05D005547 4.3e-42 175.6 150 58.7
C05p55460 Brassica napus HOM05D004659 ORTHO05D005547 4.3e-42 175.6 135 62.2
BolC1t05226H Brassica oleracea HOM05D004659 ORTHO05D005547 4.3e-42 175.6 135 62.2
BolC5t34212H Brassica oleracea HOM05D004659 ORTHO05D005547 4.3e-42 175.6 135 62.2
CARHR086910 Cardamine hirsuta HOM05D004659 ORTHO05D005547 4.3e-42 175.6 136 62.5
CBR_g32465 Chara braunii HOM05D004659 ORTHO05D005547 4.3e-42 175.6 181 58.0
A05p37030 Brassica napus HOM05D004659 ORTHO05D005547 5.6e-42 175.3 135 62.2
BraA05t22500Z Brassica rapa HOM05D004659 ORTHO05D005547 5.6e-42 175.3 135 62.2
Zm00001eb355270 Zea mays HOM05D004659 ORTHO05D005547 1.0e-40 171.0 153 54.2
Haze_16952 Corylus avellana HOM05D004659 ORTHO05D005547 5.2e-40 168.7 231 48.5
Os05g0121500 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 1.2e-39 167.5 156 53.2
HPP92_012064 Vanilla planifolia HOM05D004659 ORTHO05D005547 6.4e-38 161.8 157 52.2
SMO306G0014 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 8.3e-38 161.4 102 78.4
A02p02000 Brassica napus HOM05D004659 ORTHO05D005547 8.0e-33 144.8 102 77.5
Glyma.13G155300 Glycine max HOM05D004659 ORTHO05D005547 1.5e-31 140.6 102 79.4
Sc01g0005590 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.6e-28 130.6 168 45.8
Hund23274 Selenicereus undatus HOM05D004659 ORTHO05D005547 3.5e-28 129.4 194 41.2
Rhsim07G0202500 Rhododendron simsii HOM05D004659 ORTHO05D005547 1.0e-27 127.9 130 60.0
Cfa001576 Carpinus fangiana HOM05D004659 ORTHO05D005547 6.6e-27 125.2 231 43.7
PRCOL_00005567 Prasinoderma coloniale HOM05D004659 ORTHO05D005547 1.9e-26 123.6 143 45.5
Sc26g0002120 Simmondsia chinensis HOM05D004659 ORTHO05D005547 3.3e-26 122.9 168 43.5
BcaB01g05353 Brassica carinata HOM05D004659 ORTHO05D005547 3.6e-25 119.4 130 58.5
GSVIVG01032650001 Vitis vinifera HOM05D004659 ORTHO05D005547 2.0e-23 113.6 226 43.4
Sc01g0009170 Simmondsia chinensis HOM05D004659 ORTHO05D005547 3.7e-22 109.4 125 49.6
MD17G1117700 Malus domestica HOM05D004659 ORTHO05D005547 1.6e-20 104.0 87 60.9
Cre06.g272850 Chlamydomonas reinhardtii HOM05D004659 ORTHO05D005547 2.7e-20 103.2 201 33.8
Ah.09g233850 Amaranthus hybridus HOM05D004659 ORTHO05D005547 6.0e-20 102.1 194 34.0
Pp3c11_2850 Physcomitrium patens HOM05D004659 ORTHO05D005547 5.1e-19 99.0 73 68.5
Actinidia38237 Actinidia chinensis HOM05D004659 ORTHO05D005547 1.9e-18 97.1 100 58.0
EL10Ac6g15306 Beta vulgaris HOM05D004659 ORTHO05D005547 2.5e-18 96.7 204 33.8
Zm00001eb342870 Zea mays HOM05D004659 ORTHO05D005547 7.3e-18 95.1 71 59.2
MBI05_g35481_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 4.9e-14 82.4 84 52.4
AUR62043493 Chenopodium quinoa HOM05D004659 ORTHO05D005547 7.1e-13 78.6 99 42.4
TAR633G0137 Trochodendron aralioides HOM05D004659 ORTHO05D005547 1.5e-10 70.9 66 63.6
Medtr3g058560 Medicago truncatula HOM05D004659 ORTHO05D005547 2.1e-09 67.0 48 68.8
AUR62003563 Chenopodium quinoa HOM05D004659 ORTHO05D005547 2.2e-06 57.0 79 39.2
AUR62017877 Chenopodium quinoa HOM05D004659 ORTHO05D005547 2.2e-06 57.0 79 39.2


User provided reference genes

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