Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR369G0939 Trochodendron aralioides HOM05D007120 ORTHO05D008881 1.5e-49 199.1 97 100.0
Nn2g10275 Nelumbo nucifera HOM05D007120 ORTHO05D008881 4.9e-24 114.4 61 88.5
Lj1A968T57 Lonicera japonica HOM05D007120 ORTHO05D008881 8.7e-21 103.6 58 81.0
Nn5g26831 Nelumbo nucifera HOM05D007120 ORTHO05D008881 3.3e-20 101.7 56 85.7
Gohir.D06G187000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 1.3e-19 99.8 56 82.1
Gorai.010G219300 Gossypium raimondii HOM05D007120 ORTHO05D008881 1.3e-19 99.8 56 82.1
Gohir.A06G180100 Gossypium hirsutum HOM05D007120 ORTHO05D008881 2.8e-19 98.6 56 80.4
Aqoxy4G03269 Aquilegia oxysepala HOM05D007120 ORTHO05D008881 8.2e-19 97.1 65 70.8
Duzib128G0262 Durio zibethinus HOM05D007120 ORTHO05D008881 1.1e-18 96.7 57 77.2
Gohir.D13G008000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 1.8e-18 95.9 58 77.6
Oeu006064.1 Olea europaea HOM05D007120 ORTHO05D008881 2.4e-18 95.5 63 69.8
Cfa001199 Carpinus fangiana HOM05D007120 ORTHO05D008881 3.1e-18 95.1 61 77.0
MSTRG.27254 Avicennia marina HOM05D007120 ORTHO05D008881 5.3e-18 94.4 59 76.3
Gorai.013G008400 Gossypium raimondii HOM05D007120 ORTHO05D008881 9.0e-18 93.6 58 75.9
Nitab4.5_0000171g0210 Nicotiana tabacum HOM05D007120 ORTHO05D008881 1.5e-17 92.8 62 71.0
Haze_17366 Corylus avellana HOM05D006907 ORTHO05D008598 2.6e-17 92.0 63 68.3
PGSC0003DMG400020601 Solanum tuberosum HOM05D007120 ORTHO05D008881 4.5e-17 91.3 62 69.4
Peaxi162Scf00073g02342 Petunia axillaris HOM05D007120 ORTHO05D008881 5.8e-17 90.9 62 67.7
CAN.G1229.12 Capsicum annuum HOM05D007120 ORTHO05D008881 1.0e-16 90.1 62 69.4
MBI15_g39383_MAGBIO Magnolia biondii HOM05D007120 ORTHO05D008881 1.0e-16 90.1 58 75.9
CiPaw.14G049800 Carya illinoinensis HOM05D007120 ORTHO05D008881 2.9e-16 88.6 62 69.4
Gohir.A13G007800 Gossypium hirsutum HOM05D007120 ORTHO05D008881 3.8e-16 88.2 56 73.2
Thecc.10G184500 Theobroma cacao HOM05D007120 ORTHO05D008881 4.9e-16 87.8 56 73.2
Cfa011840 Carpinus fangiana HOM05D007120 ORTHO05D008881 6.5e-16 87.4 60 75.0
Atru.chr12.199 Acer truncatum HOM05D007120 ORTHO05D008881 8.4e-16 87.0 54 66.7
Solyc03g095730.4 Solanum lycopersicum HOM05D007120 ORTHO05D008881 1.4e-15 86.3 58 70.7
Potri.019G059500 Populus trichocarpa HOM05D007120 ORTHO05D008881 1.9e-15 85.9 58 67.2
GSVIVG01032659001 Vitis vinifera HOM05D007120 ORTHO05D008881 2.5e-15 85.5 53 69.8
CANSAT56G4069 Cannabis sativa HOM05D007120 ORTHO05D008881 3.2e-15 85.1 57 66.7
MD07G1234900 Malus domestica HOM05D007120 ORTHO05D008881 3.2e-15 85.1 53 66.0
CSS0015321 Camellia sinensis var. sinensis HOM05D007120 ORTHO05D008881 4.2e-15 84.7 48 77.1
Migut.F00570 Erythranthe guttata HOM05D007120 ORTHO05D008881 7.1e-15 84.0 60 63.3
Dinv34497 Davidia involucrata HOM05D006907 ORTHO05D008598 9.3e-15 83.6 48 81.2
Cc02_g05250 Coffea canephora HOM05D007120 ORTHO05D008881 1.2e-14 83.2 56 64.3
FAN21G2234 Fragaria x ananassa HOM05D007120 ORTHO05D008881 1.6e-14 82.8 63 68.3
MD01G1169000 Malus domestica HOM05D007120 ORTHO05D008881 2.1e-14 82.4 53 64.2
Sp4g23080 Schrenkiella parvula HOM05D007120 ORTHO05D008881 2.1e-14 82.4 54 63.0
FAN11G0923 Fragaria x ananassa HOM05D007120 ORTHO05D008881 2.7e-14 82.0 63 68.3
Hma1.2p1_0264F.1_g105975 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 2.7e-14 82.0 58 70.7
Hma1.2p1_1805F.1_g303200 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 2.7e-14 82.0 58 70.7
Lsat_1_v5_gn_6_11060 Lactuca sativa HOM05D007120 ORTHO05D008881 3.5e-14 81.6 56 64.3
RcHm_v2.0_Chr1g0372461 Rosa chinensis HOM05D007120 ORTHO05D008881 4.6e-14 81.3 53 66.0
RcHm_v2.0_Chr7g0235281 Rosa chinensis HOM05D007120 ORTHO05D008881 4.6e-14 81.3 57 63.2
RcHm_v2.0_Chr7g0235311 Rosa chinensis HOM05D007120 ORTHO05D008881 4.6e-14 81.3 57 63.2
A03p22930 Brassica napus HOM05D007120 ORTHO05D008881 6.0e-14 80.9 55 61.8
BolC3t15101H Brassica oleracea HOM05D007120 ORTHO05D008881 6.0e-14 80.9 55 61.8
BraA03t11516Z Brassica rapa HOM05D007120 ORTHO05D008881 6.0e-14 80.9 55 61.8
Prupe.2G265200 Prunus persica HOM05D007120 ORTHO05D008881 1.3e-13 79.7 52 63.5
A04p31140 Brassica napus HOM05D007120 ORTHO05D008881 1.8e-13 79.3 54 59.3
BraA04t18569Z Brassica rapa HOM05D007120 ORTHO05D008881 1.8e-13 79.3 54 59.3
FvH4_7g26050 Fragaria vesca HOM05D007120 ORTHO05D008881 1.8e-13 79.3 54 68.5
FAN10G2835 Fragaria x ananassa HOM05D007120 ORTHO05D008881 1.8e-13 79.3 54 68.5
HanXRQChr10g0312991 Helianthus annuus HOM05D007120 ORTHO05D008881 1.8e-13 79.3 55 61.8
Hund13439 Selenicereus undatus HOM05D007120 ORTHO05D008881 1.8e-13 79.3 60 63.3
Os07g0680300 Oryza sativa ssp. japonica HOM05D007120 ORTHO05D008881 2.3e-13 79.0 56 64.3
BcaB01g03516 Brassica carinata HOM05D007120 ORTHO05D008881 3.0e-13 78.6 54 61.1
C04p68540 Brassica napus HOM05D007120 ORTHO05D008881 3.0e-13 78.6 54 59.3
BolC4t28353H Brassica oleracea HOM05D007120 ORTHO05D008881 3.0e-13 78.6 54 59.3
FAN03G2745 Fragaria x ananassa HOM05D007120 ORTHO05D008881 3.9e-13 78.2 58 65.5
Thhalv10017507m.g Eutrema salsugineum HOM05D007120 ORTHO05D008881 5.1e-13 77.8 57 59.6
Nitab4.5_0000375g0220 Nicotiana tabacum HOM05D007120 ORTHO05D008881 1.1e-12 76.6 71 54.9
Prupe.6G040200 Prunus persica HOM05D007120 ORTHO05D008881 1.5e-12 76.3 62 62.9
AL4G38650 Arabidopsis lyrata HOM05D007120 ORTHO05D008881 1.9e-12 75.9 58 56.9
AT2G40765 Arabidopsis thaliana HOM05D007120 ORTHO05D008881 1.9e-12 75.9 58 56.9
Carub.0004s2306 Capsella rubella HOM05D007120 ORTHO05D008881 1.9e-12 75.9 58 53.4
ATR1127G135 Amborella trichopoda HOM05D007120 ORTHO05D008881 3.3e-12 75.1 55 63.6
HanXRQChr02g0048061 Helianthus annuus HOM05D007120 ORTHO05D008881 3.3e-12 75.1 56 58.9
Manes.10G002800 Manihot esculenta HOM05D007120 ORTHO05D008881 3.3e-12 75.1 54 61.1
CARHR135860 Cardamine hirsuta HOM05D007120 ORTHO05D008881 7.4e-12 73.9 54 59.3
Manes.07G142200 Manihot esculenta HOM05D007120 ORTHO05D008881 7.4e-12 73.9 54 61.1
Glyma.06G141900 Glycine max HOM05D007120 ORTHO05D008881 1.3e-11 73.2 45 71.1
Phvul.009G043000 Phaseolus vulgaris HOM05D007120 ORTHO05D008881 1.3e-11 73.2 45 66.7
MD03G1050700 Malus domestica HOM05D007120 ORTHO05D008881 1.6e-11 72.8 41 75.6
Nitab4.5_0011372g0020 Nicotiana tabacum HOM05D007120 ORTHO05D008881 1.6e-11 72.8 96 42.7
TAR633G1173 Trochodendron aralioides HOM05D009315 ORTHO05D008839 2.8e-11 72.0 55 67.3
CiPaw.09G151000 Carya illinoinensis HOM05D007120 ORTHO05D008881 3.7e-11 71.6 59 57.6
BcaC02g12732 Brassica carinata HOM05D007120 ORTHO05D008881 6.3e-11 70.9 43 65.1
A05p01890 Brassica napus HOM05D007120 ORTHO05D008881 6.3e-11 70.9 43 65.1
Glyma.04G223400 Glycine max HOM05D007120 ORTHO05D008881 6.3e-11 70.9 45 64.4
Lalb_Chr11g0067731 Lupinus albus HOM05D007120 ORTHO05D008881 6.3e-11 70.9 45 66.7
C04p02230 Brassica napus HOM05D007120 ORTHO05D008881 8.2e-11 70.5 43 65.1
BolC4t21869H Brassica oleracea HOM05D007120 ORTHO05D008881 8.2e-11 70.5 43 65.1
C04p16380 Brassica napus HOM05D007120 ORTHO05D008881 1.4e-10 69.7 40 67.5
C01p26040 Brassica napus HOM05D007120 ORTHO05D008881 2.4e-10 68.9 43 62.8
Lalb_Chr23g0272151 Lupinus albus HOM05D007120 ORTHO05D008881 2.4e-10 68.9 45 64.4
Nitab4.5_0012297g0020 Nicotiana tabacum HOM05D007120 ORTHO05D008881 2.4e-10 68.9 45 75.6
Lj1g0003388 Lotus japonicus HOM05D007120 ORTHO05D008881 3.1e-10 68.6 45 64.4
FAN01G0895 Fragaria x ananassa HOM05D007120 ORTHO05D008881 6.9e-10 67.4 71 50.7
C01p18970 Brassica napus HOM05D007120 ORTHO05D008881 1.2e-09 66.6 44 63.6
Lalb_Chr08g0239241 Lupinus albus HOM05D007120 ORTHO05D008881 1.5e-09 66.2 45 60.0
Medtr3g093810 Medicago truncatula HOM05D007120 ORTHO05D008881 5.9e-09 64.3 45 64.4
DCAR_014662 Daucus carota HOM05D007120 ORTHO05D008881 7.6e-09 63.9 57 52.6
Sc11g0006040 Simmondsia chinensis HOM05D007120 ORTHO05D008881 7.6e-09 63.9 47 63.8
Sopen07g008940 Solanum pennellii HOM05D007120 ORTHO05D008881 1.0e-08 63.5 40 77.5
CiPaw.13G063000 Carya illinoinensis HOM05D007120 ORTHO05D008881 1.7e-08 62.8 65 52.3
CsaV3_6G002350 Cucumis sativus L. HOM05D007120 ORTHO05D008881 2.9e-08 62.0 46 69.6
Peaxi162Scf00184g00003 Petunia axillaris HOM05D007120 ORTHO05D008881 6.5e-08 60.8 41 68.3
QL03p057485 Quercus lobata HOM05D005577 ORTHO05D006941 6.5e-08 60.8 81 48.1
CsaV3_5G011100 Cucumis sativus L. HOM05D007120 ORTHO05D008881 1.4e-07 59.7 45 62.2
QL09p041996 Quercus lobata HOM05D031581 ORTHO05D008881 1.4e-07 59.7 63 57.1
MELO3C020013.2 Cucumis melo HOM05D007120 ORTHO05D008881 1.9e-07 59.3 40 75.0
Sed0014987 Sechium edule HOM05D007120 ORTHO05D008881 3.2e-07 58.5 56 48.2
ClCG11G005640 Citrullus lanatus HOM05D007120 ORTHO05D008881 5.5e-07 57.8 40 70.0
DCAR_018042 Daucus carota HOM05D007120 ORTHO05D008881 5.5e-07 57.8 41 53.7
FAN06G1351 Fragaria x ananassa HOM05D007120 ORTHO05D008881 9.3e-07 57.0 32 71.9
COL.COLO4_19468 Corchorus olitorius HOM05D007120 ORTHO05D008881 1.6e-06 56.2 42 64.3
Hund15797 Selenicereus undatus HOM05D007120 ORTHO05D008881 3.6e-06 55.1 46 52.2
Ciclev10033060m.g Citrus clementina HOM05D007120 ORTHO05D008881 6.1e-06 54.3 47 57.4


User provided reference genes

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